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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060152 ID=TCONS_00060152|Name=TCONS_00060152|organism=Clytia hemisphaerica|type=transcript|length=893bp
CTTGAACAAAAACCCTAATCTATTATTCTAGTCAGATTTAATCTTTCCTG
ACTAAATTAGCTGCTACATCCTGTAGCGTGTGATACTACTCCTGTAGCAT
GTGACAGTACTCTCTGGTAAAGAGTtgttaattcttttttattctttttc
taGTGATAATATCTTGAAAATCCATGTTTCGTTTTTCGACAACACGGTTG
AGACAGAGGAAATGCAACCAGCCGTCTCTTGGAATTCTCTCATAGcGACC
ATGGGTGGAGCAATCGGGCTTGGTCTCGGATTCAGTTTCATCACCGGATT
CGAATTtctattcttcttttttgacgtcattAAATTGGCATGGCAACGAC
GTAAACAAAAACAAGTACTTGGTATGTAAATGGACAATGCACAAAACACA
ACACAGGTGTTTATTTGGTATTTGTGAGTCAATATATAAAGGTTGTATCG
AGTATATAAAACACGAAAAAGCTAAGAATTGGCAATCGACAGGGACTGGA
ACTTGAAAAAGTTACCATCTTAAACTTTGATGGTAATAGTTTAAAAGtgc
acaaaagaaaaaaaaaatccatcaagAAAAGGGGATTTTTCATCCATCAT
tgacatttttctattttgcagTTAGGTCATTTTTGGTTTAACCTGACGAT
GGTTTCATTACGGACAAGACCTTCGTAAAAATTATATCTTCGTGAtgaat
ttcaatgaattatAATTAAAAGTACCCGCGTGAGAACTTTATATTTAATC
ATatcgtaaaataaaaagtagaaATGAAATATTCATTATATTAAAATGGA
AactcagaattttttttttgtgctaGCGTGTGATAAATGAGGTCACTGTC
TGAAATTTcgatgattaaaaaaaattaatttggatTATAGAAA Run BLAST on NCBI transcript from alignment at scaffold_335:12879..14786+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060152 ID=TCONS_00060152|Name=TCONS_00060152|organism=Clytia hemisphaerica|type=transcript|length=1908bp|location=Sequence derived from alignment at scaffold_335:12879..14786+ (Clytia hemisphaerica)
CTTGAACAAAAACCCTAATCTATTATTCTAGTCAGATTTAATCTTTCCTG
ACTAAATTAGCTGCTACATCCTGTAGCGTGTGATACTACTCCTGTAGCAT
GTGACAGTACTCTCTGGTAAAGAGTtgttaattcttttttattctttttc
taGTGATAATATCTTGAAAATCCATGTTTCGTTTTTCGACAACACGGTTG
AGACAGAGGAAATGCAACCAGCCGTCTCTTGGAATTCTCTCATAGGTAAa
tttataccttatcggccaaaacttagtcggccttaattttagttggccca
aatttttagctggccctaattttagtcaccaagccaaaatttagtcactt
ttgGCCGATAATGTAATCAATTTTCTTCGCTACGAATATTGTGTAGTTTA
CCTTTCAACAAATCAAATGATTATTTCAAAGAGACCTCTGTGTTACAGAC
CCAGTGGGACCCCAACATCACTGAAAATTCtagccaaaatttcgtcccca
tcCCCATTGAGGAAAATACCCCACAGTTTCAGACCCACTGGGAAGTTGAC
TTTGTTTTTACGCCCATTTGAGATTCAATGAAAAAACTGCACTGAAAATC
ATCCCCAGTAGACTTTTTGACCTGGAATCAATAGGATTTCTTTCTCTATT
GAGATATAacaatacacccccttctcacaggccCACTAAGAAcctcttcc
cactggaaaaattgcccAAAATGTGTTCGTTCTCACCTTTTATTGCGTCA
CACCCTGGTAAGGAAATATTTTAGTACCCTTAGACTTCTTTCGGGTAATA
TTATGGTGCGAATAGTGGTTTACTTAATTGTATATTGGTCATTCGCATTT
AGgaacacctccttctcacagacccggcaGGATTTTTTCAGCCCAAACTC
GATTGGGATTGATATTAGCCAGAagattcagtggggatagataaaatagc
acaatattttgcagtgaggattcgctttctaattattttcagcagggaca
aaaattggggttcaattttccactggggacaatattttggccaatttttc
cagtgggtctgtgagaagtgggtgtggttttgagttttgtttaagagggt
tttaggtttaaaactagTAAAGCTATTGAAATGAATATAAAACAttcatg
aaaattatttaaacgattttaaaatgtcaaaagGAAGACATGTTTAGTTA
CTATAATGGGTCATTTCTATAATGTTCCCttatggaattttttcaaaatc
tttctttcagcGACCATGGGTGGAGCAATCGGGCTTGGTCTCGGATTCAG
TTTCATCACCGGATTCGAATTtctattcttcttttttgacgtcattAAAT
TGGCATGGCAACGACGTAAACAAAAACAAGTACTTGGTATGTAAATGGAC
AATGCACAAAACACAACACAGGTGTTTATTTGGTATTTGTGAGTCAATAT
ATAAAGGTTGTATCGAGTATATAAAACACGAAAAAGCTAAGAATTGGCAA
TCGACAGGGACTGGAACTTGAAAAAGTTACCATCTTAAACTTTGATGGTA
ATAGTTTAAAAGtgcacaaaagaaaaaaaaaatccatcaagAAAAGGGGA
TTTTTCATCCATCATtgacatttttctattttgcagTTAGGTCATTTTTG
GTTTAACCTGACGATGGTTTCATTACGGACAAGACCTTCGTAAAAATTAT
ATCTTCGTGAtgaatttcaatgaattatAATTAAAAGTACCCGCGTGAGA
ACTTTATATTTAATCATatcgtaaaataaaaagtagaaATGAAATATTCA
TTATATTAAAATGGAAactcagaattttttttttgtgctaGCGTGTGATA
AATGAGGTCACTGTCTGAAATTTcgatgattaaaaaaaattaatttggat
TATAGAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060152-exon-scaffold_335-1491911889:12879..13123 | TCONS_00060152-exon-scaffold_335-1491911889:12879..13123 | Clytia hemisphaerica | exon |
| TCONS_00060152-exon-scaffold_335-1510915933:12879..13123 | TCONS_00060152-exon-scaffold_335-1510915933:12879..13123 | Clytia hemisphaerica | exon |
| TCONS_00060152-exon-scaffold_335-1575043694:12879..13123 | TCONS_00060152-exon-scaffold_335-1575043694:12879..13123 | Clytia hemisphaerica | exon |
| TCONS_00060152-exon-scaffold_335-1491911889:14139..14786 | TCONS_00060152-exon-scaffold_335-1491911889:14139..14786 | Clytia hemisphaerica | exon |
| TCONS_00060152-exon-scaffold_335-1510915933:14139..14786 | TCONS_00060152-exon-scaffold_335-1510915933:14139..14786 | Clytia hemisphaerica | exon |
| TCONS_00060152-exon-scaffold_335-1575043694:14139..14786 | TCONS_00060152-exon-scaffold_335-1575043694:14139..14786 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_335 | supercontig | scaffold_335:12879..14786 + |
Blast
The following BLAST results are available for this feature:
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