TCONS_00060149 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060149
Unique NameTCONS_00060149
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length229

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060149 ID=TCONS_00060149|Name=TCONS_00060149|organism=Clytia hemisphaerica|type=transcript|length=229bp
GTTCAATGCTCGAGACTCCAAACGATTTGGCTAGATTTGTCAAATCTTTT
TTGTCAATCAGGTGAGCACGTTTGAAATTGGTGCCTTCAGCTGAATCTCT
TATATCATCTAAAATTCTTTCCCGTGAAATACCAAGATGAAGTTTGGATG
CAATTTCTTCTCGTAGTTTCTTACTAATTCGTGTATGCTGAATTTGGATT
TCATGACCATAATGAGTGTGATTTGCCTC
Run BLAST on NCBI

transcript from alignment at scaffold_334:346086..346314

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060149 ID=TCONS_00060149|Name=TCONS_00060149|organism=Clytia hemisphaerica|type=transcript|length=229bp|location=Sequence derived from alignment at scaffold_334:346086..346314 (Clytia hemisphaerica)
GAGGCAAATCACACTCATTATGGTCATGAAATCCAAATTCAGCATACACG
AATTAGTAAGAAACTACGAGAAGAAATTGCATCCAAACTTCATCTTGGTA
TTTCACGGGAAAGAATTTTAGATGATATAAGAGATTCAGCTGAAGGCACC
AATTTCAAACGTGCTCACCTGATTGACAAAAAAGATTTGACAAATCTAGC
CAAATCGTTTGGAGTCTCGAGCATTGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037845XLOC_037845Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060149-exon-scaffold_334-1491911889:346086..346314TCONS_00060149-exon-scaffold_334-1491911889:346086..346314Clytia hemisphaericaexon
TCONS_00060149-exon-scaffold_334-1510915933:346086..346314TCONS_00060149-exon-scaffold_334-1510915933:346086..346314Clytia hemisphaericaexon
TCONS_00060149-exon-scaffold_334-1575043694:346086..346314TCONS_00060149-exon-scaffold_334-1575043694:346086..346314Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_334supercontigscaffold_334:346086..346314 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	5.16724	1.80885	2.24056	0	0.714794	0.7138	0	0	0	0	0.825819	0	0	1.0377	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060149 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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