TCONS_00060147 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060147
Unique NameTCONS_00060147
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length622

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060147 ID=TCONS_00060147|Name=TCONS_00060147|organism=Clytia hemisphaerica|type=transcript|length=622bp
tttCCTGGTAAATCCTCAGGTATATTCCAACCTGAGGAATCGTAATAGGT
TAAACTTTAGTTGCCTTTGGAGTAAATGGCCATAGACCAATGATTGCCTT
GTAAGCCATCCTCTCCTAggaatgtttttaaattgaaaataccAACATTA
ATCAAAAAAATGATTTCCTTGCAAGATTTAGGATGTTCCTTAGAAAAGTA
CTTTTTAAAATCACCAAGATAATTCAAATAACACACATGATAATCTGACT
GCTGACTGTTCAACATTGCAGCAACAAATAACATATGGTCTGTATTTAGA
AACCGCTTGCCGCATAGTTCAGAGAATATAGAGGGGCTCATGGGTATGCC
AGGGAGATCAGCATGAGGTGTGCACCATAAAAGGTTCTTGAATTTGGCAA
AAACGTCATCTTGAATCACCTCATTGATATTTTTTGGCTTCACTTTTGTT
TTATTGAGCCAAGCTATCTCTTGCCCCACAGCTCTTTTGATAGTTTGGAT
TCTGTGCAATGTTAATAAATGACCAACATCATCATAGTCAAGAAGCCCTC
TGTCATAGTTTCTAACATAGTTTCCTGCAGCAAGTCTTTTATGCTTACCA
AGATCTTCAGACCATTTAACTA
Run BLAST on NCBI

protein sequence of TCONS_00060147-protein

>TCONS_00060147-protein ID=TCONS_00060147-protein|Name=TCONS_00060147-protein|organism=Clytia hemisphaerica|type=polypeptide|length=187bp
VKWSEDLGKHKRLAAGNYVRNYDRGLLDYDDVGHLLTLHRIQTIKRAVGQ
EIAWLNKTKVKPKNINEVIQDDVFAKFKNLLWCTPHADLPGIPMSPSIFS
ELCGKRFLNTDHMLFVAAMLNSQQSDYHVCYLNYLGDFKKYFSKEHPKSC
KEIIFLINVGIFNLKTFLGEDGLQGNHWSMAIYSKGN
Run BLAST on NCBI

transcript from alignment at scaffold_334:343695..344316

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060147 ID=TCONS_00060147|Name=TCONS_00060147|organism=Clytia hemisphaerica|type=transcript|length=622bp|location=Sequence derived from alignment at scaffold_334:343695..344316 (Clytia hemisphaerica)
TAGTTAAATGGTCTGAAGATCTTGGTAAGCATAAAAGACTTGCTGCAGGA
AACTATGTTAGAAACTATGACAGAGGGCTTCTTGACTATGATGATGTTGG
TCATTTATTAACATTGCACAGAATCCAAACTATCAAAAGAGCTGTGGGGC
AAGAGATAGCTTGGCTCAATAAAACAAAAGTGAAGCCAAAAAATATCAAT
GAGGTGATTCAAGATGACGTTTTTGCCAAATTCAAGAACCTTTTATGGTG
CACACCTCATGCTGATCTCCCTGGCATACCCATGAGCCCCTCTATATTCT
CTGAACTATGCGGCAAGCGGTTTCTAAATACAGACCATATGTTATTTGTT
GCTGCAATGTTGAACAGTCAGCAGTCAGATTATCATGTGTGTTATTTGAA
TTATCTTGGTGATTTTAAAAAGTACTTTTCTAAGGAACATCCTAAATCTT
GCAAGGAAATCATTTTTTTGATTAATGTTggtattttcaatttaaaaaca
ttccTAGGAGAGGATGGCTTACAAGGCAATCATTGGTCTATGGCCATTTA
CTCCAAAGGCAACTAAAGTTTAACCTATTACGATTCCTCAGGTTGGAATA
TACCTGAGGATTTACCAGGaaa

Coding sequence (CDS) from alignment at scaffold_334:343695..344316

>TCONS_00060147 ID=TCONS_00060147|Name=TCONS_00060147|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at scaffold_334:343695..344316 (Clytia hemisphaerica)
GTTAAATGGTCTGAAGATCTTGGTAAGCATAAAAGACTTGCTGCAGGAAA
CTATGTTAGAAACTATGACAGAGGGCTTCTTGACTATGATGATGTTGGTC
ATTTATTAACATTGCACAGAATCCAAACTATCAAAAGAGCTGTGGGGCAA
GAGATAGCTTGGCTCAATAAAACAAAAGTGAAGCCAAAAAATATCAATGA
GGTGATTCAAGATGACGTTTTTGCCAAATTCAAGAACCTTTTATGGTGCA
CACCTCATGCTGATCTCCCTGGCATACCCATGAGCCCCTCTATATTCTCT
GAACTATGCGGCAAGCGGTTTCTAAATACAGACCATATGTTATTTGTTGC
TGCAATGTTGAACAGTCAGCAGTCAGATTATCATGTGTGTTATTTGAATT
ATCTTGGTGATTTTAAAAAGTACTTTTCTAAGGAACATCCTAAATCTTGC
AAGGAAATCATTTTTTTGATTAATGTTggtattttcaatttaaaaacatt
ccTAGGAGAGGATGGCTTACAAGGCAATCATTGGTCTATGGCCATTTACT
CCAAAGGCAACTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037843XLOC_037843Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060147-proteinTCONS_00060147-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060147-exon-scaffold_334-1491911889:343695..344316TCONS_00060147-exon-scaffold_334-1491911889:343695..344316Clytia hemisphaericaexon
TCONS_00060147-exon-scaffold_334-1510915933:343695..344316TCONS_00060147-exon-scaffold_334-1510915933:343695..344316Clytia hemisphaericaexon
TCONS_00060147-exon-scaffold_334-1575043694:343695..344316TCONS_00060147-exon-scaffold_334-1575043694:343695..344316Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_334supercontigscaffold_334:343695..344316 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.194526	0.0951569	0.463377	0.457709	2.31927	1.96448	1.01344	1.61397	0.174062	1.43027	0.228524	0.118662	0	0	0	0	0	0.0955559	0.0830554	0	0	0.0895455	0.461149	0.411564	0	0.377124	0	0.0971416
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060147 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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