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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060140 ID=TCONS_00060140|Name=TCONS_00060140|organism=Clytia hemisphaerica|type=transcript|length=2921bp
TATCTCAAGACCAATTATATACGGTATTGATTGCGTTTATAAGCACAATC
ACATCACACTCCCCACCATAAACCAATCAATAACGTATAATAACTTTTGA
CCAATCAATAACGAATACATTGACCAATCAATAACGAATAACTTTTGACC
AATCAATAACGAATAACTTTTGACCAATCAATAACGAATAACTTTTGACC
AATCAATAacgaataacttttgattaatCAATAATGAATAACTTTGACCA
ATTAATAACGAATAACTTTTGACCAATCAGTAACGAATAACATTGACCAA
TTATTAACGAATAACATTTGATCACTGAGAAGCACCGATCCTTGAATCAG
CGAGACAAGCCATCGTAGCAAGCTCCGTCATGATATCGAGTTCGTCGACA
GATTGGATGAGTACCAATGAACGGATGGCTCGATTTGTAAAGCGAAATTT
CTTTTCTTGGTGATTCTTGTAGCGGACTGAAGCACGTCTTACTTTCCCAT
CTTTTCCAATTTGAACATCGTCAACGATTCCATACTGATAATTTTTGCAA
AGGACGGATTCCTGCTTAGTAAATAGGACAACATCTCCTTTCGATAACGG
CTTATCGTCGCGAAACCATTTGCTTTGAGACATGAAATTGGGAATATGTA
ACAACCAGACTTCGAACCAGGCGTTGAAAATTTCTATATTCTCTTCCACA
ACCTTTAATGGATTGAATGTGGTAAGCATCTCACCGTGAGGGCATCTTTC
GTTATTCCTTCCCAAACGAAGGCGGTTTGGCGTTAGAAGATCGATGGCTT
CATAATCAGAAACTTCATTCCTGATTGCAATAGGTAGGTTGTTAATGGAA
TTGGCAATCATTGAACCCAACGTTTCCCATTGTAGCAAAGATAAACGACA
GTTTAAAGTAGCTTTCTCGATCGACAAATTGAtttctttgatctttcttt
CAACCTTCCCATGAAAGTTGTGACCACCGACAGGGCAAGTGTTGTACTCA
ACACCAACATCTCTGTGAAGTTGATTCATCGTGTCTCTGAAGTTCAGTTT
CATCTCGGAACAGCCTTTGATTAGCTGACTTCCTTCATCACACAACAAGG
TTTTTGGAAAGCCGGAATCGCTTGCAAATCTGATAAATGCTTGGATGAAT
CCAGGGGTTGAATAATCATCCATTATTTTGATGGAAATGGAAGAAGTGGT
ACAACAACAGAAGACTACGAGCCATATCTTCAGGGTTGTTCGCTTGTTGT
GCTTTGAATATGCCTTGTAAGGACCAGATAAGTCTACCTGGCTGACGTAG
AAAGCAGGAGCGATTGTTAAGTTGAATGAAGGTAAGGGACCCATCGAAAC
TTCGATCGTCTTTTTCATCAAGTAACGACACCGTTGACATGACTTTTTGA
CCCTCTTAACAATTGATCGTAGCTCAAAGATGTAAgcttctttcaaaata
tttctgatAGTGGTTTCGATTCCACGATGAGAACAGGACTCGTTGTACCA
GTGAGCCTCATTGATGATAGCATATGCCACAGGAGAGTGCTTGTCAATGA
TCGGTACACAAAATGTTGTGGATGTCAAATCCTTCATGACTCTGGTAAAC
TTTCCTGTGATTGTGAAGTCGTCACAAGATAGGATTCGTCCGGTGTAATA
CAGGATATCGTCATTCGTCTTGGAGATCTTCTTGTATTTGCTCTCCGGAA
GAAAATGTTTGACTTCTGCTGTACACTTCCTGAAATAGTAAGCTTTTGCT
GCATCGATGTCTTGTGATCGAGTTGCCTTTTGACTTTCGATTGGTGAATA
ATCAAACTTCAATCTAATGAATTTGTAGATGTAGCTTAATATTCTGACGA
CTTTGCTGAATCGATAACGATTTGGATCGATCAGGTAATTTGAAAATTGA
TGACGTTCCTTGACTTCATCAGGAACAATTGATAACGGTTGATCTGGATT
TGATAAAAAGTGTGTTTGATGAGGCAAGGTTTCCTCATTGATCTTTGATA
ATTCTGTTTGGCTCAAGGTGATATCAGAAATACGAGTGATTGGAAATTCG
GATCGATCTTTAGACATCCATGGAAGGCCATTGATCCAATtggaattttg
agaaatttcttCAATCTGCACACCTTTCCTTGTGCCAACATCTGCTATCA
TGTTTTGTGAGCTGACATAAAACCAGTTATCTGGTGACGACAGTCTTCTG
ATTTCGATCACTCGACTCCTCACCCATTTTTTGAGTGGTTTCTCCTCATT
ATTAATCCAATGAAGGACGACTTGACTATCAGATAGCTTTATTGACGACT
TGTGAAGTGCACCGAACGATCTGCTAACAACTTCTGAAGTGTGAACATTC
ATGATAGCAGCAATCATCTCACCACGTGGCTGAGATATTCCGTCTGGAAG
GAGTTTTGATCTCGAAAAGATAAGTTGACAATGGTAGGATCCATCACGTC
GCTTGATGCGAGCGTAGATTGCAGAGCAAGCAACGACTTCACTTGCATCA
GCTGCATCTATTGTTTCGATCTGTAACGATAATGCATCTTCAGGTATGAT
ACATCGTTTGAAATGAATCGATTTAAGATCCTGCATTAATTGGAAATTGT
TGAGCCAAGTATCACGAAGCTCAGATGGAATGGGGTCATCCCAGTCTAGC
TTTCTCAAAACTAGATCATGTAAGTCGATTTTAAATGTAGCTGTTATTGG
TGTGGTCTTGCCAAGAAGATCATAGATTTCTCCAACCTTTGATGCACAAT
GGCGTTTTGTCAGTACATTTGGAATAACGTTTGATTTAGCTTCAGGTTTC
TTTCCTCTTTGTCGTTTTGCAAAATTGAGGTCGCCGACGTTGAGCGAGAG
TAAGTCATGCTTTGGTAGCCACTTCAGTCCAGCGACAATAAGACACTCTC
CATCTTCTGATAGGTTTTCCN Run BLAST on NCBI protein sequence of TCONS_00060140-protein >TCONS_00060140-protein ID=TCONS_00060140-protein|Name=TCONS_00060140-protein|organism=Clytia hemisphaerica|type=polypeptide|length=865bp
ENLSEDGECLIVAGLKWLPKHDLLSLNVGDLNFAKRQRGKKPEAKSNVIP
NVLTKRHCASKVGEIYDLLGKTTPITATFKIDLHDLVLRKLDWDDPIPSE
LRDTWLNNFQLMQDLKSIHFKRCIIPEDALSLQIETIDAADASEVVACSA
IYARIKRRDGSYHCQLIFSRSKLLPDGISQPRGEMIAAIMNVHTSEVVSR
SFGALHKSSIKLSDSQVVLHWINNEEKPLKKWVRSRVIEIRRLSSPDNWF
YVSSQNMIADVGTRKGVQIEEISQNSNWINGLPWMSKDRSEFPITRISDI
TLSQTELSKINEETLPHQTHFLSNPDQPLSIVPDEVKERHQFSNYLIDPN
RYRFSKVVRILSYIYKFIRLKFDYSPIESQKATRSQDIDAAKAYYFRKCT
AEVKHFLPESKYKKISKTNDDILYYTGRILSCDDFTITGKFTRVMKDLTS
TTFCVPIIDKHSPVAYAIINEAHWYNESCSHRGIETTIRNILKEAYIFEL
RSIVKRVKKSCQRCRYLMKKTIEVSMGPLPSFNLTIAPAFYVSQVDLSGP
YKAYSKHNKRTTLKIWLVVFCCCTTSSISIKIMDDYSTPGFIQAFIRFAS
DSGFPKTLLCDEGSQLIKGCSEMKLNFRDTMNQLHRDVGVEYNTCPVGGH
NFHGKVERKIKEINLSIEKATLNCRLSLLQWETLGSMIANSINNLPIAIR
NEVSDYEAIDLLTPNRLRLGRNNERCPHGEMLTTFNPLKVVEENIEIFNA
WFEVWLLHIPNFMSQSKWFRDDKPLSKGDVVLFTKQESVLCKNYQYGIVD
DVQIGKDGKVRRASVRYKNHQEKKFRFTNRAIRSLVLIQSVDELDIMTEL
ATMACLADSRIGASQ Run BLAST on NCBI transcript from alignment at scaffold_334:297080..300000 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060140 ID=TCONS_00060140|Name=TCONS_00060140|organism=Clytia hemisphaerica|type=transcript|length=2921bp|location=Sequence derived from alignment at scaffold_334:297080..300000 (Clytia hemisphaerica)
NGGAAAACCTATCAGAAGATGGAGAGTGTCTTATTGTCGCTGGACTGAAG
TGGCTACCAAAGCATGACTTACTCTCGCTCAACGTCGGCGACCTCAATTT
TGCAAAACGACAAAGAGGAAAGAAACCTGAAGCTAAATCAAACGTTATTC
CAAATGTACTGACAAAACGCCATTGTGCATCAAAGGTTGGAGAAATCTAT
GATCTTCTTGGCAAGACCACACCAATAACAGCTACATTTAAAATCGACTT
ACATGATCTAGTTTTGAGAAAGCTAGACTGGGATGACCCCATTCCATCTG
AGCTTCGTGATACTTGGCTCAACAATTTCCAATTAATGCAGGATCTTAAA
TCGATTCATTTCAAACGATGTATCATACCTGAAGATGCATTATCGTTACA
GATCGAAACAATAGATGCAGCTGATGCAAGTGAAGTCGTTGCTTGCTCTG
CAATCTACGCTCGCATCAAGCGACGTGATGGATCCTACCATTGTCAACTT
ATCTTTTCGAGATCAAAACTCCTTCCAGACGGAATATCTCAGCCACGTGG
TGAGATGATTGCTGCTATCATGAATGTTCACACTTCAGAAGTTGTTAGCA
GATCGTTCGGTGCACTTCACAAGTCGTCAATAAAGCTATCTGATAGTCAA
GTCGTCCTTCATTGGATTAATAATGAGGAGAAACCACTCAAAAAATGGGT
GAGGAGTCGAGTGATCGAAATCAGAAGACTGTCGTCACCAGATAACTGGT
TTTATGTCAGCTCACAAAACATGATAGCAGATGTTGGCACAAGGAAAGGT
GTGCAGATTGaagaaatttctcaaaattccaATTGGATCAATGGCCTTCC
ATGGATGTCTAAAGATCGATCCGAATTTCCAATCACTCGTATTTCTGATA
TCACCTTGAGCCAAACAGAATTATCAAAGATCAATGAGGAAACCTTGCCT
CATCAAACACACTTTTTATCAAATCCAGATCAACCGTTATCAATTGTTCC
TGATGAAGTCAAGGAACGTCATCAATTTTCAAATTACCTGATCGATCCAA
ATCGTTATCGATTCAGCAAAGTCGTCAGAATATTAAGCTACATCTACAAA
TTCATTAGATTGAAGTTTGATTATTCACCAATCGAAAGTCAAAAGGCAAC
TCGATCACAAGACATCGATGCAGCAAAAGCTTACTATTTCAGGAAGTGTA
CAGCAGAAGTCAAACATTTTCTTCCGGAGAGCAAATACAAGAAGATCTCC
AAGACGAATGACGATATCCTGTATTACACCGGACGAATCCTATCTTGTGA
CGACTTCACAATCACAGGAAAGTTTACCAGAGTCATGAAGGATTTGACAT
CCACAACATTTTGTGTACCGATCATTGACAAGCACTCTCCTGTGGCATAT
GCTATCATCAATGAGGCTCACTGGTACAACGAGTCCTGTTCTCATCGTGG
AATCGAAACCACTatcagaaatattttgaaagaagcTTACATCTTTGAGC
TACGATCAATTGTTAAGAGGGTCAAAAAGTCATGTCAACGGTGTCGTTAC
TTGATGAAAAAGACGATCGAAGTTTCGATGGGTCCCTTACCTTCATTCAA
CTTAACAATCGCTCCTGCTTTCTACGTCAGCCAGGTAGACTTATCTGGTC
CTTACAAGGCATATTCAAAGCACAACAAGCGAACAACCCTGAAGATATGG
CTCGTAGTCTTCTGTTGTTGTACCACTTCTTCCATTTCCATCAAAATAAT
GGATGATTATTCAACCCCTGGATTCATCCAAGCATTTATCAGATTTGCAA
GCGATTCCGGCTTTCCAAAAACCTTGTTGTGTGATGAAGGAAGTCAGCTA
ATCAAAGGCTGTTCCGAGATGAAACTGAACTTCAGAGACACGATGAATCA
ACTTCACAGAGATGTTGGTGTTGAGTACAACACTTGCCCTGTCGGTGGTC
ACAACTTTCATGGGAAGGTTGaaagaaagatcaaagaaaTCAATTTGTCG
ATCGAGAAAGCTACTTTAAACTGTCGTTTATCTTTGCTACAATGGGAAAC
GTTGGGTTCAATGATTGCCAATTCCATTAACAACCTACCTATTGCAATCA
GGAATGAAGTTTCTGATTATGAAGCCATCGATCTTCTAACGCCAAACCGC
CTTCGTTTGGGAAGGAATAACGAAAGATGCCCTCACGGTGAGATGCTTAC
CACATTCAATCCATTAAAGGTTGTGGAAGAGAATATAGAAATTTTCAACG
CCTGGTTCGAAGTCTGGTTGTTACATATTCCCAATTTCATGTCTCAAAGC
AAATGGTTTCGCGACGATAAGCCGTTATCGAAAGGAGATGTTGTCCTATT
TACTAAGCAGGAATCCGTCCTTTGCAAAAATTATCAGTATGGAATCGTTG
ACGATGTTCAAATTGGAAAAGATGGGAAAGTAAGACGTGCTTCAGTCCGC
TACAAGAATCACCAAGAAAAGAAATTTCGCTTTACAAATCGAGCCATCCG
TTCATTGGTACTCATCCAATCTGTCGACGAACTCGATATCATGACGGAGC
TTGCTACGATGGCTTGTCTCGCTGATTCAAGGATCGGTGCTTCTCAGTGA
TCAAATGTTATTCGTTAATAATTGGTCAATGTTATTCGTTACTGATTGGT
CAAAAGTTATTCGTTATTAATTGGTCAAAGTTATTCATTATTGattaatc
aaaagttattcgtTATTGATTGGTCAAAAGTTATTCGTTATTGATTGGTC
AAAAGTTATTCGTTATTGATTGGTCAAAAGTTATTCGTTATTGATTGGTC
AATGTATTCGTTATTGATTGGTCAAAAGTTATTATACGTTATTGATTGGT
TTATGGTGGGGAGTGTGATGTGATTGTGCTTATAAACGCAATCAATACCG
TATATAATTGGTCTTGAGATA Coding sequence (CDS) from alignment at scaffold_334:297080..300000 >TCONS_00060140 ID=TCONS_00060140|Name=TCONS_00060140|organism=Clytia hemisphaerica|type=CDS|length=2598bp|location=Sequence derived from alignment at scaffold_334:297080..300000 (Clytia hemisphaerica)
GAAAACCTATCAGAAGATGGAGAGTGTCTTATTGTCGCTGGACTGAAGTG
GCTACCAAAGCATGACTTACTCTCGCTCAACGTCGGCGACCTCAATTTTG
CAAAACGACAAAGAGGAAAGAAACCTGAAGCTAAATCAAACGTTATTCCA
AATGTACTGACAAAACGCCATTGTGCATCAAAGGTTGGAGAAATCTATGA
TCTTCTTGGCAAGACCACACCAATAACAGCTACATTTAAAATCGACTTAC
ATGATCTAGTTTTGAGAAAGCTAGACTGGGATGACCCCATTCCATCTGAG
CTTCGTGATACTTGGCTCAACAATTTCCAATTAATGCAGGATCTTAAATC
GATTCATTTCAAACGATGTATCATACCTGAAGATGCATTATCGTTACAGA
TCGAAACAATAGATGCAGCTGATGCAAGTGAAGTCGTTGCTTGCTCTGCA
ATCTACGCTCGCATCAAGCGACGTGATGGATCCTACCATTGTCAACTTAT
CTTTTCGAGATCAAAACTCCTTCCAGACGGAATATCTCAGCCACGTGGTG
AGATGATTGCTGCTATCATGAATGTTCACACTTCAGAAGTTGTTAGCAGA
TCGTTCGGTGCACTTCACAAGTCGTCAATAAAGCTATCTGATAGTCAAGT
CGTCCTTCATTGGATTAATAATGAGGAGAAACCACTCAAAAAATGGGTGA
GGAGTCGAGTGATCGAAATCAGAAGACTGTCGTCACCAGATAACTGGTTT
TATGTCAGCTCACAAAACATGATAGCAGATGTTGGCACAAGGAAAGGTGT
GCAGATTGaagaaatttctcaaaattccaATTGGATCAATGGCCTTCCAT
GGATGTCTAAAGATCGATCCGAATTTCCAATCACTCGTATTTCTGATATC
ACCTTGAGCCAAACAGAATTATCAAAGATCAATGAGGAAACCTTGCCTCA
TCAAACACACTTTTTATCAAATCCAGATCAACCGTTATCAATTGTTCCTG
ATGAAGTCAAGGAACGTCATCAATTTTCAAATTACCTGATCGATCCAAAT
CGTTATCGATTCAGCAAAGTCGTCAGAATATTAAGCTACATCTACAAATT
CATTAGATTGAAGTTTGATTATTCACCAATCGAAAGTCAAAAGGCAACTC
GATCACAAGACATCGATGCAGCAAAAGCTTACTATTTCAGGAAGTGTACA
GCAGAAGTCAAACATTTTCTTCCGGAGAGCAAATACAAGAAGATCTCCAA
GACGAATGACGATATCCTGTATTACACCGGACGAATCCTATCTTGTGACG
ACTTCACAATCACAGGAAAGTTTACCAGAGTCATGAAGGATTTGACATCC
ACAACATTTTGTGTACCGATCATTGACAAGCACTCTCCTGTGGCATATGC
TATCATCAATGAGGCTCACTGGTACAACGAGTCCTGTTCTCATCGTGGAA
TCGAAACCACTatcagaaatattttgaaagaagcTTACATCTTTGAGCTA
CGATCAATTGTTAAGAGGGTCAAAAAGTCATGTCAACGGTGTCGTTACTT
GATGAAAAAGACGATCGAAGTTTCGATGGGTCCCTTACCTTCATTCAACT
TAACAATCGCTCCTGCTTTCTACGTCAGCCAGGTAGACTTATCTGGTCCT
TACAAGGCATATTCAAAGCACAACAAGCGAACAACCCTGAAGATATGGCT
CGTAGTCTTCTGTTGTTGTACCACTTCTTCCATTTCCATCAAAATAATGG
ATGATTATTCAACCCCTGGATTCATCCAAGCATTTATCAGATTTGCAAGC
GATTCCGGCTTTCCAAAAACCTTGTTGTGTGATGAAGGAAGTCAGCTAAT
CAAAGGCTGTTCCGAGATGAAACTGAACTTCAGAGACACGATGAATCAAC
TTCACAGAGATGTTGGTGTTGAGTACAACACTTGCCCTGTCGGTGGTCAC
AACTTTCATGGGAAGGTTGaaagaaagatcaaagaaaTCAATTTGTCGAT
CGAGAAAGCTACTTTAAACTGTCGTTTATCTTTGCTACAATGGGAAACGT
TGGGTTCAATGATTGCCAATTCCATTAACAACCTACCTATTGCAATCAGG
AATGAAGTTTCTGATTATGAAGCCATCGATCTTCTAACGCCAAACCGCCT
TCGTTTGGGAAGGAATAACGAAAGATGCCCTCACGGTGAGATGCTTACCA
CATTCAATCCATTAAAGGTTGTGGAAGAGAATATAGAAATTTTCAACGCC
TGGTTCGAAGTCTGGTTGTTACATATTCCCAATTTCATGTCTCAAAGCAA
ATGGTTTCGCGACGATAAGCCGTTATCGAAAGGAGATGTTGTCCTATTTA
CTAAGCAGGAATCCGTCCTTTGCAAAAATTATCAGTATGGAATCGTTGAC
GATGTTCAAATTGGAAAAGATGGGAAAGTAAGACGTGCTTCAGTCCGCTA
CAAGAATCACCAAGAAAAGAAATTTCGCTTTACAAATCGAGCCATCCGTT
CATTGGTACTCATCCAATCTGTCGACGAACTCGATATCATGACGGAGCTT
GCTACGATGGCTTGTCTCGCTGATTCAAGGATCGGTGCTTCTCAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060140-exon-scaffold_334-1491911889:297080..300000 | TCONS_00060140-exon-scaffold_334-1491911889:297080..300000 | Clytia hemisphaerica | exon |
| TCONS_00060140-exon-scaffold_334-1510915933:297080..300000 | TCONS_00060140-exon-scaffold_334-1510915933:297080..300000 | Clytia hemisphaerica | exon |
| TCONS_00060140-exon-scaffold_334-1575043694:297080..300000 | TCONS_00060140-exon-scaffold_334-1575043694:297080..300000 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_334 | supercontig | scaffold_334:297080..300000 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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