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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060139 ID=TCONS_00060139|Name=TCONS_00060139|organism=Clytia hemisphaerica|type=transcript|length=997bp
TTGGCACTTTTGGAAATGTTTTGGCTAGAGGTCCGGCAGCAAAGCAAAGA
TCCTTCTCGGCTTCTTTTAGTGGAAATTGCGGAAACTCCCCGGTTATATC
GGTAAGACAGGTTCCTCTTAGAATAGTGGTTTCCCCGGAAACAAGCGGAA
GTTGAACGCGGTAAATTCCATGCTCCGCAGAGGTGCCTTTCTTTCCCACT
CCGGTAATCGAAACAGGGATGTTTGAGATCAAAGTAACGTGTGACCCAAG
ACGCTCAACTGCACTTTTTCTGACGATAAAGTCACTACACCCAGAATCAA
AGAATATATTGAATACTTCACCATTGACTTTGATTGACTGGAACATGTAG
ATTCCTCGGTTTGGGATATCTCCACCTTGATCCTCAAAATCTGGTTGAAC
ATTGTTGACTTCGATTTCTCCACTTGAGATTTCTGAGTAGAAGGATAATT
TGATGTCTCTGGAAAATGAAGGTAAGCTTGAATTTCTGGTAATGAATCTG
GACTTGTACTTGTCCAATAGATCctgattttcatcaaaatgctTATGCTC
TTCACATATAAGGATGTGTTTCTTTTTGGGGTACTTGGAATGTGATCCAT
GGGAGCAAACAAAATCTTGTTGGCATTTCCCTTCTTCATGTTTCCCAACG
TTCCACTTAGCCCCTGGCAAAAGACATTGAAAGCAAAGACCCTTTTTGCG
CAACATTTGAAGTCTTTCGGCAGGTGTCTTCTCGACAAACTTCCGGCACG
AAAAGTATTGAATGACTTTGACTCCTCCCGGGCCTGTCGTAGCAACATGG
TCATCTTCCCCAGCAGCACTCCCACAAAGAACGCAGATTTCATTATCAAA
TTTTTCTGAATGATAGCCTGATAAGCCTGGGCCTTTTCGTCTTGGGGGTG
CAGATGGTGGATCCTCCCTTCCTGAGAGTCTAAGCTTTTGTTGTTGGATC
TTTAACTCCTTCTCTAAGAAGTCAATGACGTTTTCCCACAACACTTT Run BLAST on NCBI protein sequence of TCONS_00060139-protein >TCONS_00060139-protein ID=TCONS_00060139-protein|Name=TCONS_00060139-protein|organism=Clytia hemisphaerica|type=polypeptide|length=332bp
KVLWENVIDFLEKELKIQQQKLRLSGREDPPSAPPRRKGPGLSGYHSEKF
DNEICVLCGSAAGEDDHVATTGPGGVKVIQYFSCRKFVEKTPAERLQMLR
KKGLCFQCLLPGAKWNVGKHEEGKCQQDFVCSHGSHSKYPKKKHILICEE
HKHFDENQDLLDKYKSRFITRNSSLPSFSRDIKLSFYSEISSGEIEVNNV
QPDFEDQGGDIPNRGIYMFQSIKVNGEVFNIFFDSGCSDFIVRKSAVERL
GSHVTLISNIPVSITGVGKKGTSAEHGIYRVQLPLVSGETTILRGTCLTD
ITGEFPQFPLKEAEKDLCFAAGPLAKTFPKVP Run BLAST on NCBI transcript from alignment at scaffold_334:295415..296411 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060139 ID=TCONS_00060139|Name=TCONS_00060139|organism=Clytia hemisphaerica|type=transcript|length=997bp|location=Sequence derived from alignment at scaffold_334:295415..296411 (Clytia hemisphaerica)
AAAGTGTTGTGGGAAAACGTCATTGACTTCTTAGAGAAGGAGTTAAAGAT
CCAACAACAAAAGCTTAGACTCTCAGGAAGGGAGGATCCACCATCTGCAC
CCCCAAGACGAAAAGGCCCAGGCTTATCAGGCTATCATTCAGAAAAATTT
GATAATGAAATCTGCGTTCTTTGTGGGAGTGCTGCTGGGGAAGATGACCA
TGTTGCTACGACAGGCCCGGGAGGAGTCAAAGTCATTCAATACTTTTCGT
GCCGGAAGTTTGTCGAGAAGACACCTGCCGAAAGACTTCAAATGTTGCGC
AAAAAGGGTCTTTGCTTTCAATGTCTTTTGCCAGGGGCTAAGTGGAACGT
TGGGAAACATGAAGAAGGGAAATGCCAACAAGATTTTGTTTGCTCCCATG
GATCACATTCCAAGTACCCCAAAAAGAAACACATCCTTATATGTGAAGAG
CATAagcattttgatgaaaatcagGATCTATTGGACAAGTACAAGTCCAG
ATTCATTACCAGAAATTCAAGCTTACCTTCATTTTCCAGAGACATCAAAT
TATCCTTCTACTCAGAAATCTCAAGTGGAGAAATCGAAGTCAACAATGTT
CAACCAGATTTTGAGGATCAAGGTGGAGATATCCCAAACCGAGGAATCTA
CATGTTCCAGTCAATCAAAGTCAATGGTGAAGTATTCAATATATTCTTTG
ATTCTGGGTGTAGTGACTTTATCGTCAGAAAAAGTGCAGTTGAGCGTCTT
GGGTCACACGTTACTTTGATCTCAAACATCCCTGTTTCGATTACCGGAGT
GGGAAAGAAAGGCACCTCTGCGGAGCATGGAATTTACCGCGTTCAACTTC
CGCTTGTTTCCGGGGAAACCACTATTCTAAGAGGAACCTGTCTTACCGAT
ATAACCGGGGAGTTTCCGCAATTTCCACTAAAAGAAGCCGAGAAGGATCT
TTGCTTTGCTGCCGGACCTCTAGCCAAAACATTTCCAAAAGTGCCAA Coding sequence (CDS) from alignment at scaffold_334:295415..296411 >TCONS_00060139 ID=TCONS_00060139|Name=TCONS_00060139|organism=Clytia hemisphaerica|type=CDS|length=996bp|location=Sequence derived from alignment at scaffold_334:295415..296411 (Clytia hemisphaerica)
AAAGTGTTGTGGGAAAACGTCATTGACTTCTTAGAGAAGGAGTTAAAGAT
CCAACAACAAAAGCTTAGACTCTCAGGAAGGGAGGATCCACCATCTGCAC
CCCCAAGACGAAAAGGCCCAGGCTTATCAGGCTATCATTCAGAAAAATTT
GATAATGAAATCTGCGTTCTTTGTGGGAGTGCTGCTGGGGAAGATGACCA
TGTTGCTACGACAGGCCCGGGAGGAGTCAAAGTCATTCAATACTTTTCGT
GCCGGAAGTTTGTCGAGAAGACACCTGCCGAAAGACTTCAAATGTTGCGC
AAAAAGGGTCTTTGCTTTCAATGTCTTTTGCCAGGGGCTAAGTGGAACGT
TGGGAAACATGAAGAAGGGAAATGCCAACAAGATTTTGTTTGCTCCCATG
GATCACATTCCAAGTACCCCAAAAAGAAACACATCCTTATATGTGAAGAG
CATAagcattttgatgaaaatcagGATCTATTGGACAAGTACAAGTCCAG
ATTCATTACCAGAAATTCAAGCTTACCTTCATTTTCCAGAGACATCAAAT
TATCCTTCTACTCAGAAATCTCAAGTGGAGAAATCGAAGTCAACAATGTT
CAACCAGATTTTGAGGATCAAGGTGGAGATATCCCAAACCGAGGAATCTA
CATGTTCCAGTCAATCAAAGTCAATGGTGAAGTATTCAATATATTCTTTG
ATTCTGGGTGTAGTGACTTTATCGTCAGAAAAAGTGCAGTTGAGCGTCTT
GGGTCACACGTTACTTTGATCTCAAACATCCCTGTTTCGATTACCGGAGT
GGGAAAGAAAGGCACCTCTGCGGAGCATGGAATTTACCGCGTTCAACTTC
CGCTTGTTTCCGGGGAAACCACTATTCTAAGAGGAACCTGTCTTACCGAT
ATAACCGGGGAGTTTCCGCAATTTCCACTAAAAGAAGCCGAGAAGGATCT
TTGCTTTGCTGCCGGACCTCTAGCCAAAACATTTCCAAAAGTGCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060139-exon-scaffold_334-1491911889:295415..296411 | TCONS_00060139-exon-scaffold_334-1491911889:295415..296411 | Clytia hemisphaerica | exon |
| TCONS_00060139-exon-scaffold_334-1510915933:295415..296411 | TCONS_00060139-exon-scaffold_334-1510915933:295415..296411 | Clytia hemisphaerica | exon |
| TCONS_00060139-exon-scaffold_334-1575043694:295415..296411 | TCONS_00060139-exon-scaffold_334-1575043694:295415..296411 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_334 | supercontig | scaffold_334:295415..296411 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR021109 | Peptidase_aspartic_dom |
Blast
The following BLAST results are available for this feature:
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