TCONS_00060138 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060138
Unique NameTCONS_00060138
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length617

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060138 ID=TCONS_00060138|Name=TCONS_00060138|organism=Clytia hemisphaerica|type=transcript|length=617bp
CTATGATTTGTTCACATTTTTGAGAGATTTTAGAGGTTTATCACGAGCAT
TTTGAGGATATCTAGGATATTTTGTCATTTAGTCAAGAATTTGTCATTTT
AGTTCAAAATattcatcattttcattttgtactttttagttTGAACTCTG
TCAACACAATACATCAATCAACTTCAATTGTGTGCGTGTTCCAAACCGAC
CCTTAATCTGTGTCCAGCCTGCCTGCCTCTACATTCAACCTTTCAATCTT
ATTACCCACGTTCCAAAATTGATGAAGCAACAAAAATGGTACCAAACAGA
TAGCATCAACATTGAAGATATTGTCATCTTTACGAAAACTGATTCAGCAA
TATCAAAGGATTATACGTATGGTCAAGTTACTAATCTTGAATACAGTACA
GACGGTGTTGCACGTAAAGCCACCATACGATACAAAAACGTGACAGAGAA
CGTATTTCGTGAAACCAAACGAGCAGTTCGTGGTTTGGTTATTATTCATC
ATGTTGACGAGTCTGACGTAATGACTCAACTTGGTCAAATGGCATTGTAT
GTTGATTTGGCTTATTCAAAATGATTTTCCCATTGGGGGGAGTGTAATGT
TTGTGCttttaaaatgg
Run BLAST on NCBI

protein sequence of TCONS_00060138-protein

>TCONS_00060138-protein ID=TCONS_00060138-protein|Name=TCONS_00060138-protein|organism=Clytia hemisphaerica|type=polypeptide|length=100bp
MKQQKWYQTDSINIEDIVIFTKTDSAISKDYTYGQVTNLEYSTDGVARKA
TIRYKNVTENVFRETKRAVRGLVIIHHVDESDVMTQLGQMALYVDLAYSK
Run BLAST on NCBI

transcript from alignment at scaffold_334:256978..257594

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060138 ID=TCONS_00060138|Name=TCONS_00060138|organism=Clytia hemisphaerica|type=transcript|length=617bp|location=Sequence derived from alignment at scaffold_334:256978..257594 (Clytia hemisphaerica)
ccattttaaaaGCACAAACATTACACTCCCCCCAATGGGAAAATCATTTT
GAATAAGCCAAATCAACATACAATGCCATTTGACCAAGTTGAGTCATTAC
GTCAGACTCGTCAACATGATGAATAATAACCAAACCACGAACTGCTCGTT
TGGTTTCACGAAATACGTTCTCTGTCACGTTTTTGTATCGTATGGTGGCT
TTACGTGCAACACCGTCTGTACTGTATTCAAGATTAGTAACTTGACCATA
CGTATAATCCTTTGATATTGCTGAATCAGTTTTCGTAAAGATGACAATAT
CTTCAATGTTGATGCTATCTGTTTGGTACCATTTTTGTTGCTTCATCAAT
TTTGGAACGTGGGTAATAAGATTGAAAGGTTGAATGTAGAGGCAGGCAGG
CTGGACACAGATTAAGGGTCGGTTTGGAACACGCACACAATTGAAGTTGA
TTGATGTATTGTGTTGACAGAGTTCAaactaaaaagtacaaaatgaaaat
gatgaatATTTTGAACTAAAATGACAAATTCTTGACTAAATGACAAAATA
TCCTAGATATCCTCAAAATGCTCGTGATAAACCTCTAAAATCTCTCAAAA
ATGTGAACAAATCATAG

Coding sequence (CDS) from alignment at scaffold_334:256978..257594

>TCONS_00060138 ID=TCONS_00060138|Name=TCONS_00060138|organism=Clytia hemisphaerica|type=CDS|length=303bp|location=Sequence derived from alignment at scaffold_334:256978..257594 (Clytia hemisphaerica)
TCATTTTGAATAAGCCAAATCAACATACAATGCCATTTGACCAAGTTGAG
TCATTACGTCAGACTCGTCAACATGATGAATAATAACCAAACCACGAACT
GCTCGTTTGGTTTCACGAAATACGTTCTCTGTCACGTTTTTGTATCGTAT
GGTGGCTTTACGTGCAACACCGTCTGTACTGTATTCAAGATTAGTAACTT
GACCATACGTATAATCCTTTGATATTGCTGAATCAGTTTTCGTAAAGATG
ACAATATCTTCAATGTTGATGCTATCTGTTTGGTACCATTTTTGTTGCTT
CAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037834XLOC_037834Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060138-proteinTCONS_00060138-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060138-exon-scaffold_334-1491911889:256978..257594TCONS_00060138-exon-scaffold_334-1491911889:256978..257594Clytia hemisphaericaexon
TCONS_00060138-exon-scaffold_334-1510915933:256978..257594TCONS_00060138-exon-scaffold_334-1510915933:256978..257594Clytia hemisphaericaexon
TCONS_00060138-exon-scaffold_334-1575043694:256978..257594TCONS_00060138-exon-scaffold_334-1575043694:256978..257594Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_334supercontigscaffold_334:256978..257594 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.697772	1.34792	0.498747	0.247787	4.05119	3.45169	1.92783	1.90875	0.270918	0.823736	0.215744	0.654124	0.0767338	0.397805	0.155214	0.305901	0	0.607769	0.0924354	0.239135	0.25222	0	0.366397	0.0906428	0.18672	0.371503	0.879744	0.564359	0.239432	0.294996
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060138 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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