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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060135 ID=TCONS_00060135|Name=TCONS_00060135|organism=Clytia hemisphaerica|type=transcript|length=1517bp
gtcaaaggacaattataaagtgaatttaaggtgattgggtggatattggg
cggacagGCGTTCTGTACGTTCCGAGATCGAAAATTAGAGAAGAGTAAAA
GAAGGGGCGGGTGtgttagtatgtaatattaattcattattttttttatt
ttcattttttgcgaATGCaataatgaatttttgatttttgaattttaagg
aAATATACAATGTAATATATactatatttgattgtcaatgccaaaagata
tttctttgcTTTACGATTAATCTGCTGTGTTActtcgccacttacccccg
gaaTGTTTTAGTAGGCTCTTCAGTCACGGGAATTAAAACACGCGTATATG
TTGAACCTGACTGTGGACTAACcaaaattgcaattacataaattattgtg
gaagtgtacgcttgagacgaatgtttgggaaatcaaaaagacaacttttg
taaggatgttgagttttgtttatatggcactTTGTGATGGACTGCTTGTT
AGTCATAAGTGTTTGACAGAGTGCCCAAAAAATTGTTATGGGCATTTTAC
CTCTCCAAAAAAGCAGAAGTCATTTCTGGCGCCAAGGATCAGTTCTTGGT
TCACTTCTCTTCCTGATAATGATCCAAGATATTGACACTAACATCCTACA
TTCATATTTCTATCTTCATTTGCTGATGATACACGTTTAATGAAGGAGAT
NGAGAGCTGATTCAAATAGCACCAAAGTCATGGTCCATCATCGGATTtct
caaattggatgattgttgagacgaacaaagaagccttcaaaaacggctag
ttcgaaatgcaggtcacaggtcacaggtcaacaggtcacaggtcacaggt
caacaaagtccAGAcctgaaaaaagataataagatcataacattacataa
cataacatcaatacataacgcattaaattacaaaaaagtaatacatgtta
tttagatattataNatacggaaaaaatgaagaactaaAAGAACACTCAAG
TTACCTCTCAGACACTGGCTCTCCTATCGAAACCAAGATGGGCGTGAAGG
ATATAGGAGTCACTCTGGATGTGAACATGACATACAGCAAACACATCACA
AACCAGATCAAGAAAGTCAAAAGTATCATTGATTGGATCCATCAAACGTT
CAAAACAAGAGATTGTCAAGTAATGCTAACTCTTTGGAAGTCACTGGTAC
TACCACACATTGACTATTGCTCCCAGCTGTGGTCACCTTCAAAAAGATAT
CTGTTCCAACAACTGGAATCACTTCAAAAATCTTACCTGAATGGAATTTC
AACATCTCAACtattgggagaagctcaaaGAACTTAAACTATACAGCCTG
GAGCGACGCAGAGAAAGATACAGGATTATCTACACCTGGAGCATCCTAGA
ACAACTTTtaccaaattttaactatgctGAAAACAAAGGTGGCATCTTCA
GTTACGATAACCAGGGACTGGGTAAAAAATGCTATCTAAAAGAGGTGAAC
ATGAGGCAAAAAACATC Run BLAST on NCBI protein sequence of TCONS_00060135-protein >TCONS_00060135-protein ID=TCONS_00060135-protein|Name=TCONS_00060135-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MLFRYYXYGKNEELKEHSSYLSDTGSPIETKMGVKDIGVTLDVNMTYSKH
ITNQIKKVKSIIDWIHQTFKTRDCQVMLTLWKSLVLPHIDYCSQLWSPSK
RYLFQQLESLQKSYLNGISTSQLLGEAQRT Run BLAST on NCBI transcript from alignment at scaffold_334:170787..172303 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060135 ID=TCONS_00060135|Name=TCONS_00060135|organism=Clytia hemisphaerica|type=transcript|length=1517bp|location=Sequence derived from alignment at scaffold_334:170787..172303 (Clytia hemisphaerica)
GATGTTTTTTGCCTCATGTTCACCTCTTTTAGATAGCATTTTTTACCCAG
TCCCTGGTTATCGTAACTGAAGATGCCACCTTTGTTTTCagcatagttaa
aatttggtaAAAGTTGTTCTAGGATGCTCCAGGTGTAGATAATCCTGTAT
CTTTCTCTGCGTCGCTCCAGGCTGTATAGTTTAAGTTCtttgagcttctc
ccaataGTTGAGATGTTGAAATTCCATTCAGGTAAGATTTTTGAAGTGAT
TCCAGTTGTTGGAACAGATATCTTTTTGAAGGTGACCACAGCTGGGAGCA
ATAGTCAATGTGTGGTAGTACCAGTGACTTCCAAAGAGTTAGCATTACTT
GACAATCTCTTGTTTTGAACGTTTGATGGATCCAATCAATGATACTTTTG
ACTTTCTTGATCTGGTTTGTGATGTGTTTGCTGTATGTCATGTTCACATC
CAGAGTGACTCCTATATCCTTCACGCCCATCTTGGTTTCGATAGGAGAGC
CAGTGTCTGAGAGGTAACTTGAGTGTTCTTttagttcttcattttttccg
tatNtataatatctaaataacatgtattacttttttgtaatttaatgcgt
tatgtattgatgttatgttatgtaatgttatgatcttattatcttttttc
aggTCTggactttgttgacctgtgacctgtgacctgttgacctgtgacct
gtgacctgcatttcgaactagccgtttttgaaggcttctttgttcgtctc
aacaatcatccaatttgagaAATCCGATGATGGACCATGACTTTGGTGCT
ATTTGAATCAGCTCTCNATCTCCTTCATTAAACGTGTATCATCAGCAAAT
GAAGATAGAAATATGAATGTAGGATGTTAGTGTCAATATCTTGGATCATT
ATCAGGAAGAGAAGTGAACCAAGAACTGATCCTTGGCGCCAGAAATGACT
TCTGCTTTTTTGGAGAGGTAAAATGCCCATAACAATTTTTTGGGCACTCT
GTCAAACACTTATGACTAACAAGCAGTCCATCACAAagtgccatataaac
aaaactcaacatccttacaaaagttgtctttttgatttcccaaacattcg
tctcaagcgtacacttccacaataatttatgtaattgcaattttgGTTAG
TCCACAGTCAGGTTCAACATATACGCGTGTTTTAATTCCCGTGACTGAAG
AGCCTACTAAAACAttccgggggtaagtggcgaagTAACACAGCAGATTA
ATCGTAAAgcaaagaaatatcttttggcattgacaatcaaatatagtATA
TATTACATTGTATATTtccttaaaattcaaaaatcaaaaattcattattG
CATtcgcaaaaaatgaaaataaaaaaaataatgaattaatattacatact
aacaCACCCGCCCCTTCTTTTACTCTTCTCTAATTTTCGATCTCGGAACG
TACAGAACGCctgtccgcccaatatccacccaatcaccttaaattcactt
tataattgtcctttgac Coding sequence (CDS) from alignment at scaffold_334:170787..172303 >TCONS_00060135 ID=TCONS_00060135|Name=TCONS_00060135|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at scaffold_334:170787..172303 (Clytia hemisphaerica)
TTAAGTTCtttgagcttctcccaataGTTGAGATGTTGAAATTCCATTCA
GGTAAGATTTTTGAAGTGATTCCAGTTGTTGGAACAGATATCTTTTTGAA
GGTGACCACAGCTGGGAGCAATAGTCAATGTGTGGTAGTACCAGTGACTT
CCAAAGAGTTAGCATTACTTGACAATCTCTTGTTTTGAACGTTTGATGGA
TCCAATCAATGATACTTTTGACTTTCTTGATCTGGTTTGTGATGTGTTTG
CTGTATGTCATGTTCACATCCAGAGTGACTCCTATATCCTTCACGCCCAT
CTTGGTTTCGATAGGAGAGCCAGTGTCTGAGAGGTAACTTGAGTGTTCTT
ttagttcttcattttttccgtatNtataatatctaaataacat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060135-exon-scaffold_334-1491911889:170787..172303 | TCONS_00060135-exon-scaffold_334-1491911889:170787..172303 | Clytia hemisphaerica | exon |
| TCONS_00060135-exon-scaffold_334-1510915933:170787..172303 | TCONS_00060135-exon-scaffold_334-1510915933:170787..172303 | Clytia hemisphaerica | exon |
| TCONS_00060135-exon-scaffold_334-1575043694:170787..172303 | TCONS_00060135-exon-scaffold_334-1575043694:170787..172303 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_334 | supercontig | scaffold_334:170787..172303 . |
Blast
The following BLAST results are available for this feature:
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