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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060134 ID=TCONS_00060134|Name=TCONS_00060134|organism=Clytia hemisphaerica|type=transcript|length=1806bp
attctttgtgttttccaaacattttcctctgcaatgacattgattagagt
caacctgtcatcactgacctgtgacctgtgacctgcgacctgtgacctgc
gttacGAACTAGCCGcttcaaaaagtatcaaaaagtaAGTATCCTCCTCC
TCGCCGACGACTATTCTTAAAGTATTCTTTGAGTGTTCTCATGATCAGTT
TATGGAATATTCATTTGTGACGGACTgttgatacttgactgtactgcAAT
TAACAATACTATCAGTGTCAAACAAGGGGATGTCCTAGGCCCCATGCTCT
TCACGTTCTTCATCACAGCAACCATCAGTAGTTGGAGAATAAAATTTTCT
GCCACTCCTTTTGTTATTCATGACAAAAAATGATGCTCAAATAACAGGTA
GATCAATCAAAGCACGTGGAGAACCAATTCAGAATATACAGATGATACTT
AAGTCGTATTCGATAATCGTCATGATGCTGTTGTTGAGACGCAATCACTA
GTTCACCACTTTTCTCGTTTTGGTACAGAAATTCACACCAGAATAACAGA
GCCTCGTCAAAGTTAAATAACTGAATTGCTCTTCTGTGCCAAGGCTCCTT
CTCTTTACAAATCGCTATCAAGATTACTATAAAGCTGATCTCTCTGACAT
CGTTTTAACCAATATCAATAACCGATACATCCCAATCGTCAATCAGTTCA
CATATTTATTTAGGAAGTATCATTATAACAAATGGTACGAATGACCTCAA
CAGGTATTTGTAAAGCGGGAAATGCGTTTGGGACactgataaaatcgatt
ttcagCTCCAGTAGCAGTAGTGTCAATTATGTCACAAAGGGAAAAgttta
ttcttcttttgttttgccCATACTCTTGTATTGTGCTGAATGTTGGTGTG
TTACAGAAAAGTTATTAAAGTTATTAtcaagatttcatcatcaaTGTGTT
TGTGTTATGTGCCACACCAATCGATTTCAGGCTTGGCAGGAAAGGCTGTT
GTTGTTATATGTTAGAAAAGTTATCTTTGAAATCGATTGATTTGTATGTT
GTAAAAAAGCAATTACAATGGGCTCGTATGCCCAGTCAGGACTTCCTTTC
ACTTTTATCAGCATTACGCAAACAGCAATGTgtgctaaattattttggtt
tcaatttcaagcaaaaaaggtcttagcaacagggcgcgtgCACATAGCAA
CAGGACGCGTGCACATAGCAACAGGACGCGCGTACATAGCTacagggctg
ggtagaaaaatctaaatattgaattcaaaaaaaatactgatcatcgtata
gagcaattaaaaataccccctttctatgtttagtttgttttaccttggat
tataactgaaaatatctgcAAATAACCTTTGTCTGCCATAAGCCTGTATA
AGCCCGCACGTTAATAATctgcccgcttcaattcttagaaaATGATTAGA
GAGGTACGCTTAGCAAAGCCgtgcgggcgataaatttatgttatGTTAAA
TTTGTATATAacttagtggtatttatccaataaAAAGGATGTAAAGGAGC
TGCTTTTTAAGCGGCCTGTTTTTGATCAGGCTAAAGTGTGGTAGAAAGAC
CGGTAAGTGCATTTGCCAACAACGAAagcataaaaacaaacttttttgaa
gCTTTATTGTAGAAGGAGTTCCAAAACAAGGGGTCTTCCAccttttttga
gttctttctttaaataaaaagattcAATTCAAGACCTGAATTATGTTACC
TGAATTAttaccttttcatagaattaaACAACTGTAACAAAAAGACTGAC
AAAAAG Run BLAST on NCBI transcript from alignment at scaffold_334:168137..169942 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060134 ID=TCONS_00060134|Name=TCONS_00060134|organism=Clytia hemisphaerica|type=transcript|length=1806bp|location=Sequence derived from alignment at scaffold_334:168137..169942 (Clytia hemisphaerica)
CTTTTTGTCAGTCTTTTTGTTACAGTTGTttaattctatgaaaaggtaaT
AATTCAGGTAACATAATTCAGGTCTTGAATTgaatctttttatttaaaga
aagaactcaaaaaaggTGGAAGACCCCTTGTTTTGGAACTCCTTCTACAA
TAAAGcttcaaaaaagtttgtttttatgctTTCGTTGTTGGCAAATGCAC
TTACCGGTCTTTCTACCACACTTTAGCCTGATCAAAAACAGGCCGCTTAA
AAAGCAGCTCCTTTACATCCTTTttattggataaataccactaagtTATA
TACAAATTTAACataacataaatttatcgcccgcacGGCTTTGCTAAGCG
TACCTCTCTAATCATtttctaagaattgaagcgggcagATTATTAACGTG
CGGGCTTATACAGGCTTATGGCAGACAAAGGTTATTTgcagatattttca
gttataatccaaggtaaaacaaactaaacatagaaagggggtatttttaa
ttgctctatacgatgatcagtattttttttgaattcaatatttagatttt
tctacccagccctgtAGCTATGTACGCGCGTCCTGTTGCTATGTGCACGC
GTCCTGTTGCTATGTGcacgcgccctgttgctaagaccttttttgcttga
aattgaaaccaaaataatttagcacACATTGCTGTTTGCGTAATGCTGAT
AAAAGTGAAAGGAAGTCCTGACTGGGCATACGAGCCCATTGTAATTGCTT
TTTTACAACATACAAATCAATCGATTTCAAAGATAACTTTTCTAACATAT
AACAACAACAGCCTTTCCTGCCAAGCCTGAAATCGATTGGTGTGGCACAT
AACACAAACACAttgatgatgaaatcttgaTAATAACTTTAATAACTTTT
CTGTAACACACCAACATTCAGCACAATACAAGAGTATGggcaaaacaaaa
gaagaataaacTTTTCCCTTTGTGACATAATTGACACTACTGCTACTGGA
GctgaaaatcgattttatcagtGTCCCAAACGCATTTCCCGCTTTACAAA
TACCTGTTGAGGTCATTCGTACCATTTGTTATAATGATACTTCCTAAATA
AATATGTGAACTGATTGACGATTGGGATGTATCGGTTATTGATATTGGTT
AAAACGATGTCAGAGAGATCAGCTTTATAGTAATCTTGATAGCGATTTGT
AAAGAGAAGGAGCCTTGGCACAGAAGAGCAATTCAGTTATTTAACTTTGA
CGAGGCTCTGTTATTCTGGTGTGAATTTCTGTACCAAAACGAGAAAAGTG
GTGAACTAGTGATTGCGTCTCAACAACAGCATCATGACGATTATCGAATA
CGACTTAAGTATCATCTGTATATTCTGAATTGGTTCTCCACGTGCTTTGA
TTGATCTACCTGTTATTTGAGCATCATTTTTTGTCATGAATAACAAAAGG
AGTGGCAGAAAATTTTATTCTCCAACTACTGATGGTTGCTGTGATGAAGA
ACGTGAAGAGCATGGGGCCTAGGACATCCCCTTGTTTGACACTGATAGTA
TTGTTAATTgcagtacagtcaagtatcaacAGTCCGTCACAAATGAATAT
TCCATAAACTGATCATGAGAACACTCAAAGAATACTTTAAGAATAGTCGT
CGGCGAGGAGGAGGATACTtactttttgatactttttgaagCGGCTAGTT
Cgtaacgcaggtcacaggtcgcaggtcacaggtcacaggtcagtgatgac
aggttgactctaatcaatgtcattgcagaggaaaatgtttggaaaacaca
aagaat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060134-exon-scaffold_334-1491911889:168137..169942 | TCONS_00060134-exon-scaffold_334-1491911889:168137..169942 | Clytia hemisphaerica | exon |
| TCONS_00060134-exon-scaffold_334-1510915933:168137..169942 | TCONS_00060134-exon-scaffold_334-1510915933:168137..169942 | Clytia hemisphaerica | exon |
| TCONS_00060134-exon-scaffold_334-1575043694:168137..169942 | TCONS_00060134-exon-scaffold_334-1575043694:168137..169942 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_334 | supercontig | scaffold_334:168137..169942 . |
Blast
The following BLAST results are available for this feature:
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