TCONS_00060121 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00060121
Unique Name	TCONS_00060121
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1268

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_334:162274..167387-

transcript sequence

>TCONS_00060121 ID=TCONS_00060121|Name=TCONS_00060121|organism=Clytia hemisphaerica|type=transcript|length=1268bp
taaatctGTGATTTCTCATTTGTCAATTTGAAGTCTTGACAGATGTTACG
TTTCTCATGGAATTCATGACATGATTTCTGTCTCTATTTTTAGATAGAAA
AATAGTTGCTTCCATAGATGAGATCTTTATATCTTTCTTTGAAAcatttt
attggaaatgttATGGGTGTTAGAGCAGTTTGTTTAGTATTTTGCAAAAT
ATGGACCCTTCTTGggtatataataaaaaagaatCTACGAACAGCTATCC
AGCATCAAACCATCAAGTATGATATGCAACCTTTGTCACCCCTTTCAATT
GAAAGATTGAATTTGGTACCAAGAAAAGTGATGGTGTTAGATTTAGATGA
GACCTTAATACATTCGCACCACGATggGGTGGCCAGGCCAACCGTCAAAC
CTTTAACACCTCCCGATTTTGTGCTAAAGGTGACGATAGACAGACACTTG
GTTCGCTTTTATGTTCATAAAAGACCTCATGTAGATTATTTTCTAGATGT
TATAAGTCAATGGTATGATTTGGTTGTCTTTACTGCAAGCATGGAGCAAT
ATGGATCAGCTGTCACTGACAAACTTGATAGAAATAAAGGAATTTTGAAC
AGAAGATACTATAGACAAcatTGTAAAGTAGATATTGGTGGATTTTCGAA
AGATTTAACTGTTATTTCACCTGATCTATCCAAAGTTTTTATATTGGATA
ACTCACCAAGTGCTTACCGAGGAAATCCAGATAATGCAATCCCGATAGTT
TCTTGGTTTGCTGATCCATCAGATACTGCTTTGCTCAACTTGTTGCCCAT
ATTAGACGCTTTACGGTTCACCAATGATGTCCGATCTATACTCGGAAGGA
ACCTTCATCGGCCAGTCTTATGATTCACCCTTTCTTTTATGCtttgtttt
gtcatttttactTACTGTATTACTTTTCATGCTCTGGTAATATTTTTATA
CAACTAATGTTAATAAAAGGGACTAACTTTACAATGCATTTAATTTACTT
CTTTTACCCAAATCTCCcaataattaaaatattaaatctCTTTAAATTAA
CACAGCTAAAGATAACAACGCCTATACCAAGACTTAATTAAATTTTGTAG
ATGTGGGagacaaatttttatatcttgTTCTGAATTGCATTACATTGGAG
AATGAAAGAGGCTAATATACATTATgcattttgataaatttgtaaaaatc
ttcattcatttttttgatattcgaaataaaaatataggTTGTTATGTGAT
CATTTGAAAAGTTTGTGA

Run BLAST on NCBI

transcript from alignment at scaffold_334:162274..167387-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00060121 ID=TCONS_00060121|Name=TCONS_00060121|organism=Clytia hemisphaerica|type=transcript|length=5114bp|location=Sequence derived from alignment at scaffold_334:162274..167387- (Clytia hemisphaerica)
TAAATCTGTGATTTCTCATTTGTCAATTTGAAGTCTTGACAGATGTTACG
TTTCTCATGGAATTCATGACATGATTTCTGTCTCTATTTTTAGATAGAAA
AATAGTTGCTTCCATAGATGAGATCTTTATATCTTTCTTTGAAACATTTT
ATTGGAAATGTTATGGGTGTTAGAGCAGTTTGTTTAGTATTTTGCAAAAT
ATGGACCCTTCTTGGGTATATAATAAAAAAGAATCTACGAACAGTAAGTC
TAATTTGCATTTTCATACTTTTTCTTCCTGGGAATTTAGCCATCCGAGAT
TAAAAGTAATTTGAAAGCTTGTTTTATTTAGCTTAATCTCTTGTTGTATT
GATTTTGTTGAAAGTATAAAAATCAGCTTGACATCTTCTGCATGTCACTG
AGCAAGACATAAACCAAGGTTTTAACTGAAAGAAGAAAAACCTTTTTGTG
CAGAATTTTTGATTATATCTTTTTCTTGCACACATAAAGTATGGTCTTAA
CCTTTTTTATTCACCTTTTTGCAGGCTATCCAGCATCAAACCATCAAGTA
TGATATGCAACCTTTGTCACCCCTTTCAATTGAAAGATTGAGTAAGTTCA
TTATACTTTAATCAGGGACAAGAACTTTTGAGATTTCAGCTTTTTTGCAA
GAATTTACTTTGCAACCTTTGCAATTTACCTACCTTAACGCCTTTAATTT
TCGCGTGCCCTTAGCCTTAATTTTCGCGCACTAGGCCACGCGAAAATTAA
AAGGTGCGCAAATTAGCAAATAAGGAATTTTTAGTTACTTATGGCTTTTC
TAAGGATCGCCTCTTCTCTTTGCTGAATCACCCTGAAATCGTACTCAATG
GATGGAAACAGTCCGGTATTGTCAAAAATCAATTTAGATCCTTTTTCAAA
ATAGTTATAAATTGTACTTTATGATATACTTTTAAACAAGATTCTCAAGA
AAGTCATGAAAGAAGGAATATAATTTGTGTCTCGCAATTAATCATGATTT
TTGATAAAAATATGTTATTTATAGTACAGTGGAGCCTCTAATACACTCTT
CTCGAGATGCATAAATTTATTGTTGTCCTCGTTTTCAAACAGATTTCATT
GCTATGAAATTGTACATTTAAACCAATTTAAATTCCCAAAAGGCAAATAT
TAACTCTAAAACAAAAGTACATGAAATTCAAAATGTCTCATGAGGTGTAA
ACAACACAATTATCATTGTGAATATGTAATTTTATAGCAATGAAATCTGT
TTGAAAACGAGGACAACAATATATTTATGCATCTCGAGAAGAGTGTATTA
GCGGACACCATTGGGGAAACAGATTACTGTCAGCTAATTAGAGTGTCCGC
CTTTTGGAGACTTTTTTATGAGGATTTGACTAGAAAACGGCCAGAAAAAA
ATATGTAAAGTATGTAAAGAGTAAACAAATTTTAGGATGTTACCTTGTTA
CTCTGTGTTACCCTGTGTTACTCCTGTTACCCCCTGTGACACCTTTTAGT
AACAACGCCAAAAGTATACCAAATACTACTTTGATAAATGAATAAAAAAG
GCTGATGATATAATTTGATGACGATAATGGTTGAAAATGGTTGCTAAATG
GTTGGTTGAAAAAGGTTGAAAAAGGTTGAAAATGGTTGTTCTGAGAGGTC
GAAAAAATTAAAAACCAAAAATTGCTTGTGAATGTGATGGTGGAATCATT
ATCACGGGTGAATGCAATGGTGGAAACAAAGGCTCTAGTGAATGCAATGT
TGAAATAAATAGTGCCAGTGAATGCAATGGAAATAAAGGCTCTATGTGCT
CGCAGCTGCCTCTCCTCGCCTCAAGTTGTGATAGATACAAAAAGACGAAG
AAAAAAAACGTTCTAAATTTTTATATACCACTGTTGTGCAAAATTTCAGA
TCTGAAACACTATTTGTATTATATTCTCCACTGATATATATTAAGTTTTC
AGATAATCTCAATTCCGACCAGTACCCCTTTTTGAAACATTTTATAGAAA
AGCCGCATTACTTTCTTTTTAACAGATTTGGTACCAAGAAAAGTGATGGT
GTTAGATTTAGATGAGACCTTAATACATTCGCACCACGATGGGTATTTCA
ATTTTTCTTATTTTGAACATTCCACTTTCTATAATTCAATACAAAAAAGA
AGAAATAAGAAAGAAGAAAGCTTGAATTTAAAATACTCAATTAACAACTT
GTTACCCGCTAGTGGTAAAAAAAGAAAATTCCCTTGTCTGTGCCCAAACA
AAAACAGTGCTCATGGCTAGTTTGTTTCATCATAAAATAAGTTGATCCCA
CCGAAGGTTTTTAAAAGAAAATTTTAACACGGAAGCTTCATTCTTGTTTT
TTTTGTAAACTTAAAAAAAAATTATAAACGTTCGGCCTCATCCGATGATG
GTATCAGTAAAAACGAAACTTTTTAGAAAAAGGAAATTTATATATGCAAG
TCTATCTACAGAATTTATTAAACCGTGAACACATCATTATTAGAGCCATA
AAATTCTAGAAGAAACGTCGTAAACTGTAAAAAAGGACAAAAAAGTATTT
AAAAGAGAGTAATTACCCATAAAAGTGAAAGCACGATGCGAAGGAGGATA
ATTATTATAACTTAATTTAACTAATTTGTTTTTTTTGTTACAGGGTGGCC
AGGCCAACCGTCAAACCTTTAACACCTCCCGATTTTGTGCTAAAGGTAAT
ATTTTGCCTTCATTAGCATAGAATGCACCCCCCCCTTGGGGGCTGTATTT
TTCAAAAAATACTGGGCTAGCTTGCTAGGGGGGGGGCTGAGTGTTGTGTA
ATAGAACTGGGGGCAGAGCTGATAGCTTGAAGATATTTTAAATTATGTTA
AAAATCTATGCTGTGGGGGAGGTTTTATCCCTCTTGAAAAATTTTTTTAA
CTGCGGCGCAATAAATTTATCGAGAATTTGCATGTAAAATTTCTTTGATA
TTTTGCTTTGTGAGGGTGGGGGCTATGTTTCTAGAATTTAGTCGGGGGCT
ATTTTCCTTAGCCCCCCCCCTGAAAAATGCTGGGGGCTGGACCCCTCTAC
ACACTATGATTAGACTCCACAGAGTTTTTTACGTTAATCAGAGTAACAGA
ATCAAAAATCCAACATAAGATGTCTAATCGACCATAAAAAAGTACTCAAT
TCCAATCTTGAACTCTTTTTCTATTTGTATTAGGTGACGATAGACAGACA
CTTGGTTCGCTTTTATGTTCATAAAAGACCTCATGTAGATTATTTTCTAG
ATGTTGTAAGTAGATGTATCTAGAGTTTAGAGTCTGTCCTTTCAACTTTG
GTGATTTACATTTTCTATCCTCTTTATCGCAGCTGTTTTCTTAAGTAGTT
TTCGTAAAAGATGATAGTTTAGAAAAATATTTTTTTTTGAATTGATTACT
CATAGATAAGTCAATGGTATGATTTGGTTGTCTTTACTGCAAGCATGGAG
CAATATGGATCAGCTGTCACTGACAAACTTGATAGAAATAAAGGAATTTT
GAACAGAAGATACTATAGACAAGTATATAATACAATTTGTGCAATATATT
TCATTAATAATGACTTTTCACAGAAGAATGTAAACGTGACCTAGGAAATT
TTATGTTCAAAATATTGAATTGTTCACATAATTTTCAAACTGTTTGTCAT
TAAATCTCATTTATTTGATTTTTAAGTTTCCTTTCCACTAAAAGATTTTT
TACTTAGGAACTCATTTATTCTGGAAAGGCCCACCTTGTTTATCGAATCG
AATGAATGAATCGAATTGACAATTATAATTTCCGGAGATTTTCTTTTTCA
GCATTGTAAAGTAGATATTGGTGGATTTTCGAAAGATTTAACTGTTATTT
CACCTGATCTATCCAAAGTTTTTATATTGGATAACTCACCAAGTGCTTAC
CGAGGAAATCCAGGTATGTAGATCTGATATACTTTACTTCAATTTACGAA
ATCTTTTCACACCGTTAGTTTCATTCCATGGTAACGATTTACCGCGATCC
GGCCATAGATCATTGATATTTTTACTGTAACTCTCCTCTCCTAGAAATTT
TACCTAAACGTGACTTATCTGATATGAAAAAAGAAAATNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTTTGGG
GGGGGAGCTAAATTGTTGGGGGGACCTTACTTTGTTGGGGGGACCTAGAA
ACCTGGCTGAAGCTATGTATATTTTACTTCAATTTACGAAATCTTTTCAC
ACCGTTAGTTTCATTCCATGGTAACGATTTACCGCGATCCGGCCATAGAT
CATTGATATTTTTACTGTAACTCTCCTCTCCTAGAAATTTTACCTAAACG
TGACTTATCTGATATGAAAAAAGAAAATCTTTCATCTGTTGATTCTTTAG
TCTGGATAGAGGCTGGACAAGGCTGGATAGATTATTAAACATAATTGCAC
TATGCTGTGCAACTTTTCTTCTTTTTGAATTTAGTGATCATTAAATCTAG
ACAAAAATCTTAAAAGATACAAAATTTTACTATTTTGATATTTATTTCAT
TAATTATTCTTCTGTTTGTTTTTTAGATAATGCAATCCCGATAGTTTCTT
GGTTTGCTGATCCATCAGATACTGCTTTGCTCAACTTGTTGCCCATATTA
GACGCTTTACGGTTCACCAATGATGTCCGATCTATACTCGGAAGGAACCT
TCATCGGCCAGTCTTATGATTCACCCTTTCTTTTATGCTTTGTTTTGTCA
TTTTTACTTACTGTATTACTTTTCATGCTCTGGTAATATTTTTATACAAC
TAATGTTAATAAAAGGGACTAACTTTACAATGCATTTAATTTACTTCTTT
TACCCAAATCTCCCAATAATTAAAATATTAAATCTCTTTAAATTAACACA
GCTAAAGATAACAACGCCTATACCAAGACTTAATTAAATTTTGTAGATGT
GGGAGACAAATTTTTATATCTTGTTCTGAATTGCATTACATTGGAGAATG
AAAGAGGCTAATATACATTATGCATTTTGATAAATTTGTAAAAATCTTCA
TTCATTTTTTTGATATTCGAAATAAAAATATAGGTTGTTATGTGATCATT
TGAAAAGTTTGTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037823	XLOC_037823	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_334	supercontig	scaffold_334:162274..167387 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
91.3779	93.3324	101.879	112.947	26.7809	16.7951	25.4333	23.6453	28.5751	24.3821	18.0828	17.6317	12.927	14.7211	16.1136	13.3472	19.1441	13.5597	10.301	9.26456	12.5048	9.64671	55.0248	45.1348	12.2111	15.8257	11.359	9.02459	35.0823	28.6514

Blast

[Close]

BLAST of TCONS_00060121 vs. Swiss-Prot (Human)
Match: CNEP1 (CTD nuclear envelope phosphatase 1 OS=Homo sapiens GN=CTDNEP1 PE=1 SV=2)

HSP 1 Score: 317.775 bits (813), Expect = 4.331e-106
Identity = 156/234 (66.67%), Postives = 195/234 (83.33%), Query Frame = 1

Query:  160 VMGVRAVCLVFCKIWTLLGYIIKKNLRTAIQHQTIKYDMQPLSPLSIERLNLVPRKVMVLDLDETLIHSHHDGVARPTVKPLTPPDFVLKVTIDRHLVRFYVHKRPHVDYFLDVISQWYDLVVFTASMEQYGSAVTDKLDRNKGILNRRYYRQHCKVDIGGFSKDLTVISPDLSKVFILDNSPSAYRGNPDNAIPIVSWFADPSDTAXXXXXXXXXXXRFTNDVRSILGRNLHR 861
            ++G+R       K+W+   Y++++ +RT IQ+QT++YD+ PLSP+S  RL  V RK++VLDLDETLIHSHHDGV RPTV+P TPPDF+LKV ID+H VRF+VHKRPHVD+FL+V+SQWY+LVVFTASME YGSAV DKLD ++ IL RRYYRQHC +++G + KDL+V+  DLS + ILDNSP AYR +PDNAIPI SWF+DPSDTALLNLLP+LDALRFT DVRS+L RNLH+
Sbjct:    7 LLGLRTFVAFAAKLWSFFIYLLRRQIRTVIQYQTVRYDILPLSPVSRNRLAQVKRKILVLDLDETLIHSHHDGVLRPTVRPGTPPDFILKVVIDKHPVRFFVHKRPHVDFFLEVVSQWYELVVFTASMEIYGSAVADKLDNSRSILKRRYYRQHCTLELGSYIKDLSVVHSDLSSIVILDNSPGAYRSHPDNAIPIKSWFSDPSDTALLNLLPMLDALRFTADVRSVLSRNLHQ 240

The following BLAST results are available for this feature:

BLAST of TCONS_00060121 vs. Swiss-Prot (Human)

BLAST of TCONS_00060121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CNEP1	4.331e-106	66.67	CTD nuclear envelope phosphatase 1 OS=Homo sapiens...	[more]

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TCONS_00060121 (transcript) - C. hemisphaerica