TCONS_00060110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060110
Unique NameTCONS_00060110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length556

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060110 ID=TCONS_00060110|Name=TCONS_00060110|organism=Clytia hemisphaerica|type=transcript|length=556bp
GCATCCATTTGTAAAATGCCATTCCATGTCGATATGATTGAGTTTGAGAA
TCACAAATATTACGTTGGAACTGAAAAAGTTACCTGGAGTGAGGCACAGG
CGTTATGTCATTTGAGAGGTGCTGAGCTTGTCAGTTTTAAAGACATTGAC
GAATCGAGGTTCATTCATTATGAGGCTGTCAACAAACGGggtttggagaa
attttggatTGGTTACACAGACGTTGTCAACGAAGGAACATTCAAATGGA
CAGACCATACCGAGTATGGTTTTACTCTTTTCGCTGCTGGAGAACCGAAC
AACGCTGGTAGTGAACACTGTGTTTACCAACGAAATACTGGATATTGGAA
CGACGCTAACTGCGGACTAAAGGTTGGATATGTTTGCAAGAAACCATACT
TCAATCCTAACGGGGGTGGTAAGAGCTAtcgattctttaaagaatggaGG
AATTGGGATATTGCACAACAAACATGTGGACATTTTGGTGGAAATCTGGT
GACTATCGATTCAGAAGCTGAAAATGAATTCCTCTCTCAAGAAAGTTTAA
TAAGGT
Run BLAST on NCBI

protein sequence of TCONS_00060110-protein

>TCONS_00060110-protein ID=TCONS_00060110-protein|Name=TCONS_00060110-protein|organism=Clytia hemisphaerica|type=polypeptide|length=185bp
ASICKMPFHVDMIEFENHKYYVGTEKVTWSEAQALCHLRGAELVSFKDID
ESRFIHYEAVNKRGLEKFWIGYTDVVNEGTFKWTDHTEYGFTLFAAGEPN
NAGSEHCVYQRNTGYWNDANCGLKVGYVCKKPYFNPNGGGKSYRFFKEWR
NWDIAQQTCGHFGGNLVTIDSEAENEFLSQESLIR
Run BLAST on NCBI

transcript from alignment at scaffold_334:213..13758-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060110 ID=TCONS_00060110|Name=TCONS_00060110|organism=Clytia hemisphaerica|type=transcript|length=13546bp|location=Sequence derived from alignment at scaffold_334:213..13758- (Clytia hemisphaerica)
GCATCCATTTGTAAAATGCCATTCCATGTCGATATGATTGAGTTTGAGAA
TCACAAATATTACGTTGGAACTGAAAAAGTTACCTGGAGTGAGGCACAGG
CGTTATGTCATTTGAGAGGTGCTGAGCTTGTCAGTTTTAAAGACATTGAC
GAATCGAGGTTCATTCATTATGAGGCTGTCAACAAGTAAGTTGTGAGATA
ATCGGATAATCTTCTCAATTTCACATACACCCCTGTCTCTGTGACATGTG
TCTTTTTTCAACAGTAGTAGCATATTTTCACCAAAATGAAGCCAGCGTCA
GTTTCGCATCGTCAGCGTCAGCGTCAGCGTCAACGCGAATCAGATTCAAA
TCGAAAGTGGTTATAAAAAGTGTTCTAGCCAACTTGGATCGAATGGTATG
GCTCCCATTTATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
TTACAAAAAAAATGAAGTTCATAGTTCCTTCCAATTTTTCAGTTATTTTC
CAATAAGTGGAAAAGTGGAATTCTACCCTTCTCGCCAACTTGTAGCAGTA
AAATCATACTTTATACAAGCCGACCTTAAATTTACCGAGGAAAAGTTGAT
TTTTAGAGAATGTTAAATGTTAAACATAACATTGATACAACAATTATTGA
CAACAAGTTAATCTCTTTTATTTAGGACAATAATTGAATTTGTTCATAAA
TTTGTTTAGTTCTCTGTAAACAGCGCCAGGGGTTTTCACTTTTCTGGTTG
GCTTGAAACCGAACAAGTTTCAAATACTGACAGCTGGTATGTCTCAATTG
TTCCAGAAAGACTTCTAGCGTTCTACTTTTCGTGACAAGTTTGAATTTTT
CTATTCTGATGCAAATTGTTCGACAACGCATCTCCTCTGCTCGGTTGAAA
ATTGGTTTTGCCAAATTTGAGAGGTCTTCTTCGTTTGTTCGATATGAAGC
TAAAACCAATAATAATTAGATGGAATTATAAAGATCTAAATCCTGTGCTC
GTTGAAAAGATCATTAGATGTTTTGTTTTGCTTGCTATTTTCTAACAAAT
GGCTGATAAAGGGTGTGATAACTGGTTTATCGTCAACTTAAAAAATATGA
CCAAACTTTTCTTCTTGACACTCATCAATTGTGCCTTTTTCGTTTTTTCT
CTTTCTGTGTTTTTATTGACGATAAACTTTAACGATCTTTCATGTTTGAC
TGCTTAGTAAGATAAAATGAAATATATAAATCGAAAAAATCTTACCAACT
GCACAAGAGGGAAATTTTGATCGACATTTTTCGCTTTTGATTCCATAGTG
AGAGATAGCGTGGTGTGGCACCAATTCAACTGTTGGGAATACCCCGTGTC
GAAATTTCTTCGATTTGCGAAAACGGAACGGTCGTTCCGCAACCCCTTTT
ATGTTGATTTATTTTTTGCTCATCAACCTCACTACATAATTGTTACATTG
CAAAATTAAACAATGATTATGCTAAAACTTAATGTAGTCGTCTTCCAGTG
CGCGGGCGAGCTGACTGGTATATGCCACTTCTATAACCATGTTGTCTTAC
CTCTGAAAAAGCTAATAAAATGCTAATGAAACAGTAATGAGTCGTCTGTG
ACGACGTTCTGGGACCGCAAGTTTTACACGATAATATACTAAGGGACCAT
TCAAAAAGTACGGAAAAAAAACAACAGAAGTTGAACTTATTTTAATTTTT
CTCAAAATCCCCTAATTTACCTTTGTATAGACTGTTTAATACGATCTAAT
TTTTTTTTTGAGGGGTGGGGGGTCATTTCAAAAGCGTACGTACGCGAAAG
GGGGGGGGTAATGCCAAAGCGTAAAAGGGGGAGGGGATGGTCAATTTTCA
CCGATTTTGAGCGTACGTACTTTTTGAATGGTCCCTAACTAAAAAGTTTT
AACAGAGGCAAGTTATGAATCCTAAAACAATTACTCACCAAGTTTATTGG
AGTCGTGTTACTATGCGTTAGAACGACAATAGCATCTGTGTGTTGCCTAA
AAATATCTTGTTCGGGTGCTAAAAAATTAAATATGTCATATTTATCGAAT
CAAAATAACTAAAAATAGCTGAACATTTTAAGAACAGTTTGACTTTTTTT
TGCTCATAAAAATCTTGAATGGGTATAAAATTTCGAAACATTTTGATACT
TTGCATCAATTAAATAAAAAAGTATCCAGCAGGAAACCAATTTTTGTATT
GTGGTAAAATAAGGTAGCCTAAATAGCGATATACCGGGTGCACCACAAAA
AGTTTAACATTTTGAATCATTACACCTTTTTGACACCTTTTTTTGGTGCA
CCCGGTATAGTCCTTCTATTTTCATTTTGATTATTGCTGATGATTTTTCC
GTTAAGTATAAACTGAGCTTTTGTTAGTTTTAAAAGCTCAGATTTTTTTT
GTTACTCTAATCAAGAAACAAGCTAGATGCTGAATGGACCTACCTGATGA
TGAAAGTTAGATAGCAATGCGAGGAGAAAAATGAAAAAAAATCAGTTTTA
GTTGGTCGCAAAAGTCAGTTTTATTGAATATTTCCCCGCTATAAGGGGAA
ATATTAGTTAAAAAGGCATTTCTCCGATCCTTGGCTACTTACGCCCTTTT
GCGCCCTTAAAGGGGGCGGCAATCCGCCACCACATTGCGAAGTTTGTTTT
TGTTTTCATTTGTCTTAGTTATTCAGACAAAATCGCACGGATTTAGCTTG
ATGTTACGCGCATGTTTTTGAGTAATCAAGACACGAATAATTCAGATCAA
AATACAAGATGGTCGAAAATTCACTCTTGGCTTTTTAAAAGTTATAACTC
TTTTCTGACGAACAAAAAACATACAATTTTCATCTAATTGGCGACATGAA
ATGTGAGGCTAACACTTCAACTGTAATCATCAGTAATTTCAAGAGTTTTT
CATCATTGATTACAAAGATATCCATGGATTACCTCTTCCGAATACCAAAC
CAACCAACTTAAAGATTTCAGAGACATTTGCTTGACATGATCATGAAGAA
AACGCTACATCCCCATAACTTTGGACATTAAATGATTGGCAAAATGGTAT
TAACATTCTATTGAGATGTGAAACTGGTTCAAGTTGAAGAATTGATGAGA
AAAATGGGCAATACAAGAAATATTTTTGCTTTGAAATACAAACTCTTATA
TGGACAATGTCTCTGGAACAAGTTAAATGAGATTTGTTTACCGAGTGACC
CCAAAACAAAGTCTTTAATTCTTGGTTCTTACATTCATGAGGTCAGAGGT
TTTGTGGATTTTCTAAACTTTTGAAACTTNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGGTTGTTTTCCTGACTA
AAGACACTTTTGAATGTGTGATTGTTTTCTCTGACTAGAGATACTGTGAG
CGTGTATTTAATAAACATATTGCATCTTGGCTTTTTAAATGCAGGAATTG
TCAGTCGATCGAACCCACTGGGTGAAAACATACGATCTGATGAAAATGCA
ATCTCGAAATCGTAAGGACCGCGTTCGTCTATAAGGACTGGGGATGACAA
CAAAGTTGCGTGATTGTGTTTATGAATAGGGCGCCGTATCAGTTTTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNATCAGTTTTTGACTTTCTGGCGCACAACAAGATTC
TTGTTGTGAAATTTTCCGCGGGAGGACTATTTTCCTCAGATGTATAATTT
TCAAGTGCCTTCAGAGGTATACCGTGCATGTAAGAAAATTATGAACAGCT
GTTATCAGGTTACCTTCAGATGAAACAAAATGATAGCTTTTTTCTGAGAA
AGGAAGATAATTTTTTGTGCCTTCCACCACATAAGTTTGTTTTGATTTTT
TTCCCGTCAAAAGTCACGTGATATTTTTATCTCGATCATTCCGCCTCAAC
TGGAAATTCCCCTATGCACCCTAAAAGTAATCGAGTTTTAGAAAAACAAT
AACAAACCGTGTTATGTGGTGGCGGATTGCCCCTTTAATAACGCCCACGC
CTCTCCCGATCGATTTGTGCAGTGAGGCGGAACTCTTGTCTATAGTCTAA
AACCTTTAGTCAGGATTAATCAATGTGCGATTTTTATTGAGGAAATTTAA
CTCGACCATGTGGTGCATGTCCTGGACTGTTTTGGTTGTCAACTTGACGG
AATTGGAAACTTTCTCTCTGGTTATTTTTCAGACAGTCAGACAGCTTTAA
AAGTGACTTTCACAGACTTTCAGGGATCTTTTTCCTAAGGATTTTTGAAA
TTTTTGGATGCAATATTCTTTTCTTTTTTTTTTTTTCTCCTAAAAGTGCC
ATACAGTGTGCTGGTGATTAAGGAAGCATTGATCACCAACAGTGTGAGTA
AACAACAGTGCTTGATCACTAAAGAGGTACACGGCAAAAATATAAACCTT
GTCTGCTTGAGCAGATTAATTTACATTCTCGACAAAGAGGTCGATAAAAC
AAACCTTGTCCAGGTACGACGGAAGCTTTTTATATCTGGTACGGCGAATG
AGGAAATTTAAGCGATTTTATAGCGATTTTACCGACGAAGAGGAAAACTT
CGGGTATTTTTGTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNT
GATTTGGCCTATCCCATTTGTGCTGGTTTCCTTGATTTTTAACAAACTTA
GCTTTACTGTTCTTTTGTTATACATTTTTTAATATACATTATATACATAT
ATATATATTAATATACATGTTGTGCTTAATCTGAGCTTTACATTCAGTGT
AATTTTTAAAACACATGACTACAATAATATGCAACGTTCCTCACTTTGAC
ATTTTCTTGTTATGAACCCTCGTTACGCTCTTTCTTTATAAGAACCATGA
AATTTGAGTTAAGCATAAGTTTGTTCTTATTTTTTCTATTGTCTAGAATA
ATAGACCTATTGTTTCAGTCTAAGCCTGATTGTTCTTATAAAAAAAGAGT
TAACCCTTTCAGTACCGAGCCCTTTTTTCTATTTTTTTAGCCTACACTTT
TTTATAAGCGTATCGTAATGCCCGAAGTTTTAATCATCTTATCCTGGAGA
TGAGCTTACTTTTTTAAATACAGTAGAGTCTCCATAACTCGAACCTCTAT
TACTCGAACGTCTCCTTAACTAGAACAAATTCGTTGGCAGCATGAAAATC
TCCTAATAAACTCATATAAAAAAACCTCCATATATCGAATGTTCCCCTTT
TTTGGCTCCATAACTCCAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNTTTCCTGAACTTGAAAAATATAAGCAATCTGATTG
GCTAAGAGACAAACCATATTTCTTTTTTGAAAATTTTGATTTTTGGGCCT
GGGGTCGAGTTTTTTTCATTTTTTTCAAAATCTTAAACTGCTACAATCAG
ACCTTTAAATAATAAATAATGGGTAATACTAAAATACGCAACCAGCCACA
ACCAGCCACAATCAGCCACAACCAGCCACAACCAGCCACAATCAGCCACA
ACCAGCCACAACAACCCACAACCACCCAGAAAAAGGTACAACCACCCAGG
GAAAAAGGTACAACCAGCCACAACCACCCAGAAAAAGGTACAATAAGCCA
GAAAAAAGGTACAATCAGCCACAACCACCCACAACCACCCAGAAAAAGGT
ACAACCACCCAGGAAAAGGTACAAACACCCAGGAAAAAAGGTACAACCAG
CCACAACCACCCAGAAAAAGGTACAATCACCCAGAAAAAGGTACAACCAC
CCAGGAAAAGGTACAACCAGCCAGGAAAAAAGGTACAACCAGCCACAACC
ACCCAGAAAAAGGTACAACCAGCCAGAAAAAAGGTACAATCAGCCACAAT
TACCCACAACCACCCAGAAAAAGATACAACCACCCAGGAAAAAAGGTACA
ACCAGCCACAACCACCCAGAAAAAGGTACAATCAGCCAGAAAAAAGGTAC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNAATTAGCCAGAAAAAAGGTACAATCAGCCACAACCACCCAGA
AAAAGGTACAACCACCCAGGAAAAGGTACAACCACCCAGGAGAAAAGGTA
CAACCAGCCACAACCACCCAGAAAAAGGTACAAACACCCAGGAAAAAAGG
TACAACCAGCCACAACCAGCCAGAAAAAGGTAAAACCAGCCAGAAAAAAG
GTACAACCAGCCACAACCAGCCAGAAAAAGGTAAAACCAGCCAGAAAAAA
GGTACAATCAGCCACAACCACCCAGAAAAAGGTACAAACACCCAGGAAAA
AAGGTACAACCAGCCACAACCACCCAGAAAAAGGTACAATCAGCCAGAAA
AAAGGTACAATCAGCTACAATCAGCCACAACCACCCAGAAAAAGGTACAA
ACACCCAGGAAAAAAGGTACAACCAGCCACAACCACCCAGAAAAAGGTAC
AATCAGCCAGAAAAAAGGTACAATCAGCTACAATCAGCCACAACCACCCA
GAAAAAGGTACAACCACCCAGAAAAAAAGGTACAATCAGCCACAACCACC
CAGGAAAAGGTACAACCACCCAGGAAAAGGTACAATCAGCTACAATCAGC
CACAACCACCCAGAAAAAGGTACAACCACCCAGAAAAAGGTACAACCACC
CAGGAGAAAAGGTACAATCAGCCACAACCACCCAGGAAAAGGTACAACCA
CCCAGGAAAAGGTACAACCACCCAGAAAAAGGTACAACCAGCCACAACCA
CCCAGAAAAAGGTACAACCACCCAGGAAAAAAGGTACAACCACCCACAAC
CCAAATTTAAAGACTTATACTGTAACATTTTTCAAACCAACCCTTTTCCT
TGATCTTTGATTTCAAAGGTTTAGAAAGTTCCATATTCAGCCCTCATAGA
CCTCATATTTTTATCATATGAAAAGGTTCTGTAATGAATACAATATCTAT
TTGCCAAAAAAGGTAATTTTTTCTTTTCTGTATGAAAATGTAAAGATGCA
ATTGTTAGAATATCACATAAAAATTTACACAAATAGAAATAAAAGTGAGA
TATAACACTAGTACTAAAATAAAACATTGCTCTAAATGCTAATCGATACT
ATTGGGGGGATTCTCTTTTGGAAAGAGAAAGCAAGAAGTTCTTGCGGCAG
AGTTTCTCTAAAAATTTCCCGTGTTTCATAATGGTTATGAGCACAGGATT
ATGATATATTTTATATTCAACAGTATTAATAGATGATTTTTTATCATTCG
TTCTATTAAATGTATCAAGTGTTCTGAGGGATAAGAACTCAGGAACCATC
CACTTAGCTATATGTTATAAACCTTAGTCATTAACTATTGGTGGATTAAG
ATATCAATGGTGCATACCTTATACCGCAGAACATTGGAGGCCAGAATGAG
ATGGCCATTACGAATCGTTTAATAATTTATAGATCTTACCAATAATGAAT
GAACTATCTGTTTAATTTGGTCTGTTTCATTTTTGATGTTGCTAGTTTGG
CTGTAAAACACGAATGAGAGTCAAAAAGGACTCGTGGTTCGAGCTTTCTG
AGTCTTATTGTTTTGTTGAGCATGTGATTTTTGGTGGTATTGTTTTATGT
TTTTAAAGTTATTTGATTGGTTGAGAGAGTGAGAAAATGATTNTGAGAGT
CAAAAAGGACTCGTGGTTCTCGTTTATAAGCATATCATTTCGGTGTGGCT
TTTTAAGCCTATTGGTATGATTATTTTCTATAAGCATATGTCATTTTCAT
TTGTTGTAGCGTTTATTAAGTAAGTAAGTTCAGTGTATTTTCTGATAAGT
TCTGGTAGCTCTTATAGAGAACTAACAGAAAAATAGTGTCGGCCTTCCTG
GAAATTAAGTTTTTTTGGATATTGATAATATTTTAATTGTCAGTTTTTTA
TAGGTTTTGTTTTCATTTGACTGGCAATTGGTAGAAATATATATCCTTTT
CCTGGGTGGTTGTACCATTTTCTGGGTGGTTGTACCTTTTTCTGGGTGGT
TGTACCTTTTTCTGGGTGGTTGTACCTTTTTCTGGGTGGTTGTACCANTT
CCTGGGTGGTTGTATCATTTTCTGGGTGGTTGTACCTTTTCCTGGGTGGT
TGTACCATTTTCTGGGTGGTTGTGGCTTTTCCTGGGTGGTTGTACCATTT
TCTGGGTGGTTGTACCTTTTCCTGGGTGGTTGTACCATTTTTTGGGTGGT
TGTGGCTTTTCCTGGGTGGTTGTATCATTTTCTGGGTGGTTGTACCTTTT
CCTGGGTGGTTGTACCATTTTCTGGGTGGTTGTGGCTTTTCCTGGGTGGT
TGTACCATTTTCTGGGTGGTTGTACCTTTTCCTGGGTGGTTGTACCATTT
TTTGGGTGGTTGTGGCTTTTCCTGGGTGGTTGTATCATTTTCTGGGTGGT
TGTACCTTTTCCTGGGTGGTTGTACCATTTTCTGGGTGGTTGTGGCTTTT
CCTGGGTGGTTGTACCATTTTCTGGGTGGTTGTGGCTTTTCCTTGGTGGT
TGTACCATTTTCTGGGTGGTTGTACCTTTTCCTGGGTGGTTGTACCTTTT
CCTGGGTGGTTGTGGCTGGTTGTGGCTGATTGTACCTTTTTTCTGGCTGA
TTGTACCTTTTTCTGGGTGGTTGTGGCTGGTGGTACCTTTTTTCTGGCTG
ATTGTACCTTTTTCTGGGTGGTTGTACCTTTTTCTGGGTGGTTGTACCTT
TTCCTGGGTGGTTGTACCTTTTCCTGGGTGGTTGTGGCTGGTTGTACCTT
TTTTTCTGGGTGGTTGTACCTTTTTCTGGGTGGTTGTGGGTGGTTGTGGC
TGATTGTACCTTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGGAGCCATACCATTCGA
TCCAAGTTGGCTAGAACACTTTTTTTAACCACTTTCGATTTGAATCTGAT
TCGCGTTGACGCTGACGCTGACGATACGAAACTGACGCTGGCTTCATTTT
GGTCATATTTTCACCAGGAGAAAGGAGGACGTTAGACTTTTAGAGACCTT
TAAGATATTCAAATTACTTGATCCAAAACTTACTAATGATTTAACATCTC
TTAACTTGATAGTGCAGTGATTGAAGCCGATACCATTGGTCCACTTAAAC
AACCAAGCCTTTCCACTGTTCATAACTTGCCAAGTATTCATCCGAATAAA
ATATCAACATTTTGACCAACTTTTCTTCTTTATAGACGGGGTTTGGAGAA
ATTTTGGATTGGTTACACAGACGTTGTCAACGAAGGAACATTCAAATGGA
CAGACCATACCGAGTATGGTTTTACTCTTTTCGCTGCTGGAGAACCGAAC
AACGCTGGTAGTGAACACTGTGTTTACCAACGAAATACTGGATATTGGAA
CGACGCTAACTGCGGACTAAAGGTCAGGCGTCGTTTACTCTACTACTTCT
TTTTTATAATTGGCCAACATATCTTCTCCAATAAGAAGTTTGCCCTGAAA
TTCAACTCAAACTCCACATGTTGATATATCCTAACTTCTCTGAAACTTCG
GAAAATATCTTTGGAAATTTGATCTGTTTAACAATTAAAGTTTCTCAGCC
ATAGAAGTAAGTGTTATGGTGCCTTCATTTCTCCCTCTGACTAAAATATT
TTCACTGGGTGAGACAGGAGTGTAGATGTCCGAAAAAAGGATCTCCAGAA
AAAGCATTTCTTTAGTTATATTGCTCCACCTTTGGATCCATCACAGCGGT
TCTGTTGAAATAATGGTCCAAAGTNAAAAAGGATCTCCAGAAAAAGCATT
TCTTTAGTTATATTGCTCCACCTTTGGATCCATCACAGCGGTTCTGTTGA
AATAATGGTCCAAAGTCTCCTCGTTTTAAGTAAACACTATTTTTGCAACC
ATGTGGAAACCTTTGGTCACTTTGAGCAAATAGACTTTTTCAGACAAAAA
AGGTTTTCCAAAGCATCACTTTCTATGAGAATAAAGATACATTTTCTACT
CAAATCTAATAGGTTGGATATGTTTGCAAGAAACCATACTTCAATCCTAA
CGGGGGTGGTAAGAGCTATCGATTCTTTAAAGAATGGAGGAATTGGGATA
TTGCACAACAAACATGTGGACATTTTGGTGGAAATCTGGTGACTATCGAT
TCAGAAGCTGAAAATGAATTCCTCTCTCAAGAAAGTTTAATAAGGT

Coding sequence (CDS) from alignment at scaffold_334:213..13758-

>TCONS_00060110 ID=TCONS_00060110|Name=TCONS_00060110|organism=Clytia hemisphaerica|type=CDS|length=1665bp|location=Sequence derived from alignment at scaffold_334:213..13758- (Clytia hemisphaerica)
GTTGGATATGTTTGCAAGAAACCATACTTCAATCCTAACGGGGGTGGTAA
GAGCTATCGATTCTTTAAAGAATGGAGGAATTGGGATATTGCACAACAAA
CATGTGGACATTTTGGTGGAAATCTGGTGACTATCGATTCAGAAGCTGAA
AATGAATTCCTCTCTCAAGAAAGTTTAATAAGGACGGGGTTTGGAGAAAT
TTTGGATTGGTTACACAGACGTTGTCAACGAAGGAACATTCAAATGGACA
GACCATACCGAGTATGGTTTTACTCTTTTCGCTGCTGGAGAACCGAACAA
CGCTGGTAGTGAACACTGTGTTTACCAACGAAATACTGGATATTGGAACG
ACGCTAACTGCGGACTAAAGGCATCCATTTGTAAAATGCCATTCCATGTC
GATATGATTGAGTTTGAGAATCACAAATATTACGTTGGAACTGAAAAAGT
TACCTGGAGTGAGGCACAGGCGTTATGTCATTTGAGAGGTGCTGAGCTTG
TCAGTTTTAAAGACATTGACGAATCGAGGTTCATTCATTATGAGGCTGTC
AACAAGTTGGATATGTTTGCAAGAAACCATACTTCAATCCTAACGGGGGT
GGTAAGAGCTATCGATTCTTTAAAGAATGGAGGAATTGGGATATTGCACA
ACAAACATGTGGACATTTTGGTGGAAATCTGGTGACTATCGATTCAGAAG
CTGAAAATGAATTCCTCTCTCAAGAAAGTTTAATAAGGACGGGGTTTGGA
GAAATTTTGGATTGGTTACACAGACGTTGTCAACGAAGGAACATTCAAAT
GGACAGACCATACCGAGTATGGTTTTACTCTTTTCGCTGCTGGAGAACCG
AACAACGCTGGTAGTGAACACTGTGTTTACCAACGAAATACTGGATATTG
GAACGACGCTAACTGCGGACTAAAGGCATCCATTTGTAAAATGCCATTCC
ATGTCGATATGATTGAGTTTGAGAATCACAAATATTACGTTGGAACTGAA
AAAGTTACCTGGAGTGAGGCACAGGCGTTATGTCATTTGAGAGGTGCTGA
GCTTGTCAGTTTTAAAGACATTGACGAATCGAGGTTCATTCATTATGAGG
CTGTCAACAAGTTGGATATGTTTGCAAGAAACCATACTTCAATCCTAACG
GGGGTGGTAAGAGCTATCGATTCTTTAAAGAATGGAGGAATTGGGATATT
GCACAACAAACATGTGGACATTTTGGTGGAAATCTGGTGACTATCGATTC
AGAAGCTGAAAATGAATTCCTCTCTCAAGAAAGTTTAATAAGGACGGGGT
TTGGAGAAATTTTGGATTGGTTACACAGACGTTGTCAACGAAGGAACATT
CAAATGGACAGACCATACCGAGTATGGTTTTACTCTTTTCGCTGCTGGAG
AACCGAACAACGCTGGTAGTGAACACTGTGTTTACCAACGAAATACTGGA
TATTGGAACGACGCTAACTGCGGACTAAAGGCATCCATTTGTAAAATGCC
ATTCCATGTCGATATGATTGAGTTTGAGAATCACAAATATTACGTTGGAA
CTGAAAAAGTTACCTGGAGTGAGGCACAGGCGTTATGTCATTTGAGAGGT
GCTGAGCTTGTCAGTTTTAAAGACATTGACGAATCGAGGTTCATTCATTA
TGAGGCTGTCAACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037819XLOC_037819Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060110-proteinTCONS_00060110-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060110-exon-scaffold_334-1575043694:13574..13758TCONS_00060110-exon-scaffold_334-1575043694:13574..13758Clytia hemisphaericaexon
TCONS_00060110-exon-scaffold_334-1575043694:987..1173TCONS_00060110-exon-scaffold_334-1575043694:987..1173Clytia hemisphaericaexon
TCONS_00060110-exon-scaffold_334-1575043694:213..396TCONS_00060110-exon-scaffold_334-1575043694:213..396Clytia hemisphaericaexon
TCONS_00060110-exon-scaffold_334-1510915933:13574..13758TCONS_00060110-exon-scaffold_334-1510915933:13574..13758Clytia hemisphaericaexon
TCONS_00060110-exon-scaffold_334-1510915933:987..1173TCONS_00060110-exon-scaffold_334-1510915933:987..1173Clytia hemisphaericaexon
TCONS_00060110-exon-scaffold_334-1510915933:213..396TCONS_00060110-exon-scaffold_334-1510915933:213..396Clytia hemisphaericaexon
TCONS_00060110-exon-scaffold_334-1491911889:13574..13758TCONS_00060110-exon-scaffold_334-1491911889:13574..13758Clytia hemisphaericaexon
TCONS_00060110-exon-scaffold_334-1491911889:987..1173TCONS_00060110-exon-scaffold_334-1491911889:987..1173Clytia hemisphaericaexon
TCONS_00060110-exon-scaffold_334-1491911889:213..396TCONS_00060110-exon-scaffold_334-1491911889:213..396Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_334supercontigscaffold_334:213..13758 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0997014	0	0	0.137878	0.217906	0.131447	0.123059	0	0	0.36595	0	3.65424	4.56299	0.406392	0.249212	0.552737	1.86117	2.99164	10.4728	0.395411	0.327167	0	0.106577	1.85919	0.767476	0	0	0.11348	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001304C-type_lectin-like
IPR016186C-type_lectin-like/link
IPR018378C-type_lectin_CS
IPR016187CTDL_fold
Blast
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BLAST of TCONS_00060110 vs. Swiss-Prot (Human)
Match: MRC1 (Macrophage mannose receptor 1 OS=Homo sapiens GN=MRC1 PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.478e-18
Identity = 56/194 (28.87%), Postives = 96/194 (49.48%), Query Frame = 1 
Query:   37 IEFENHKYYVGTEKVTWSEAQALCHLRGAELVSFKDIDESRFIHYEAVNKRGLEKFWIGYTDVVNEGTFKWTDHTEYGFTLFAAGEPNNAG-SEHCVYQ-RNTGYWNDANCGLKVGYVCKK-----------PYFN--PNGGGKSYRFF------------KEWRNWDIAQQTCGHFGGNLVTIDSEAENEFLS 537
            + +++++YY   EK T   A+A C     +LVS +   E +F+ ++ VN+   +  +     +  +  F W D ++  +  +A GEPN A   E+CV    N+G+WND NCG    ++C++           P     P+G  + + F+            +E +NW  A++ C  FGGNLV+I +E E  FL+
Sbjct:  805 VIYKDYQYYFSKEKETMDNARAFCKRNFGDLVSIQSESEKKFL-WKYVNRNDAQSAYFIGLLISLDKKFAWMDGSKVDYVSWATGEPNFANEDENCVTMYSNSGFWNDINCGYPNAFICQRHNSSINATTVMPTMPSVPSGCKEGWNFYSNKCFKIFGFMEEERKNWQEARKACIGFGGNLVSIQNEKEQAFLT 997
The following BLAST results are available for this feature:
BLAST of TCONS_00060110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MRC11.478e-1828.87Macrophage mannose receptor 1 OS=Homo sapiens GN=M... [more]
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