TCONS_00060103 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00060103
Unique Name	TCONS_00060103
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	287

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_334:325304..333033+

transcript sequence

>TCONS_00060103 ID=TCONS_00060103|Name=TCONS_00060103|organism=Clytia hemisphaerica|type=transcript|length=287bp
gaaaaaaaggaaccTTCTTCATGAGGTACAAAGGAGGCGTCGTCTTGCGG
GCACAAAATTGGAAGATGCATCGaaaaagcttACAAAGAGTTTCTGATGC
AGGTCAATGAGCACCAACAAAATGATACTTCCGATGCAGCCCTCGGCTTC
TGGGTGCGAAACTTTGGTTTACAGCCCCCAAGAAAAAGAAGCCACAATCA
AGGAAAACTTACTAGGAGATGattataaaataaatatatgaTAAAATCGT
gactaaatttctttttgtctcAAGCTCAAAACTTTAA

Run BLAST on NCBI

transcript from alignment at scaffold_334:325304..333033+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00060103 ID=TCONS_00060103|Name=TCONS_00060103|organism=Clytia hemisphaerica|type=transcript|length=7730bp|location=Sequence derived from alignment at scaffold_334:325304..333033+ (Clytia hemisphaerica)
gaaaaaaaggaaccTTCTTCATGAGGTATTGTTAACTTTTTCACaattgc
ttgcttgtttttggTGGGTCCAGCCCAGGTCTAGAGGTCCCAAGCAAAAA
AATAGGTCCCCCTaaatattaaaagttttttaagcagCACCCAGTCCTAT
GTTAGTATAGACTATAGAATATTTGTTGATTTAATATCGTCCTTAGGAAA
ATCGAATCTCTATTCTTTTGCCATTATCAAAATCTTAACGTAAGATGTGT
AAAAAGATCTCTAATCTCGTAATTTGATTGCCAAATGTACAGTAATCAAA
TCTTAATTGAACGGTTGATGACCAGATAGTAAATATTTGATTGTATTCCA
TGTTCGTTTGCGTAGAGTAAAATGTAAAATGGCGAAAGAAGAAATCGATT
taggcaatttttttttgaacaattacaagatttgactataccTTATTATT
CCACGAAGCAATtcctttcaaataaaagatatgttgacaatgaatgggta
acctttctagaaatccaaacattaATTGCATAGCTACTTAAAGCATTTGT
AAGGTAGAGCCTCTTAAAGTTGATCGGATAAATTCTAGCATTtgctgttg
gctgatttagttgataatttttactgcaGAGGAAATCAACAAGTGGCACa
gtggtagggctgaaggcttgtttacaggcttcaggctggccatggcctct
ccccttgtgatttcttgtgtgGTACAAAATTATCTTAAGATCAGGCTCCA
ATCATGCAAATTCAAGTGATCGGCTTTTAGAGCAATCATAGTGCATATGT
AAGGTAGGGTCTCGTTTAAAGTTGATCGGATGAATTCTAGCattggctgt
tggctgatttagttgataatttttactgcggaggaaatcaacaagtggca
cagtggtagggctggctgaaggcttgtttacaggcttcgggctggccatg
gcctctccccttgtgatttcttgtgtgGTACAAAATTATCTCAAGATCAG
GCCCCAATCATGCAAATTCAAGTGATTGGCTTTTAGAGCAATCATAGTGC
ATATGTAAGGTTGGGTCTCGTTTAAAGTTGATCGGATGAATTCTAGCatt
ggctgttggctgatttagttgataatttttactgcggaggaaatcgacaa
gtggcacagtggtagggctgaaggcttgtttacaggcttcgggctggcca
tggcctctccccttgtgatttcttgtgtggtacaaaattatcttatgatc
aggctccaatcatgcaaattcaagtgatcggcttttagagcaatcatagt
gcatttgtaaggtagggtctcgtataaagttgatcagatgaattctagcg
ttggctgttggctgatttaattgataatttttactgcggaggaaatcgac
aagtggcacagtggtagggctgaaggcttgtTTACAGGCTTCAGGCCGGC
CATGTTCTCTCCCcttgtgatttcttgtgtgGTACATACTTATCTTAAGA
TCAGGCTCCAATCATGCAAATTCAAGTGGCCAGCAAAGATTTTCTCATTT
ACAAAAGTTATTTTCTTACACATTGTTCCACCCAGGTCAAATAGGATTTA
AgtaagtagaaaaaaaattaaatttgtcttGCCAAAATGAAAATCTTCGA
ATTTCCCAtactaatgaaaataaaagacaaaattctttctttttgaattc
tTATCAACTGGCAGTTTGTTTTTACAGGAGAAGAAAGCCAAGCTAATTCT
TCTGGGACATTGTTttataaaaactattttttgttttatatggataaaaa
agttgattctctatattaattattttcaacaaaaatgcaTTTCATTAAGA
AGTAACATTCNCACagtggtagggctgaaggcttgtttacaggcttcagg
ctggccatggcctctccccttgtgatttcttgtgtggtacaaaattattt
aaagaaattaaatttgtccTGCCTAAATGAAAATCTTCGAACTTACCATA
CTAATGATTATAAAGacaattctttctttttgaattctTATCAACTGGCA
GTTTGTTGTTACTGGATAAGAAAGCCAAGCTAATTCTTCTGGGACATTGT
TttataaaaactattttttgctttatatggataaaaaagttgattcaATA
TGTTAAttgttttcaacaaaaatgCATGTCATTAAGAAGTAACATTCTGA
TGATTTTAAAGTAAAGTAGGGGAAATAAAGTGGTGAAAGTTCCTTTGGAA
TGATGGGATACAGTATCATATCATATTGTAAGGATTAACAGTGTATTTAT
ATTGTGGTAGAAAAGAGTACATTTGTGTTATATTCTTGAACGTATTACTA
TTTATAATTAAATACCGTTGGCTAATcctgttttttttacttttctttag
aTATTTTACACAATGTGAAAGGGTGGTTGGGTGGACGAAACATAGTTGCA
TTCTGAAGAGtcaacttttgttttgaaatagtttttcaTGTTCAAACCCT
GAAATGGAACTGTGCGGCTTTTCTGCTTTTTCCCTCGTTATTGGCAATAT
ACTGGTACAATGAATTATCTTGTGACTGTGGTTGATGGTTTTATAACtgg
aaagattttttaatttttctgacAATAAAGTAAGTTTTTTTCATTATAAG
TCTACTCTTGCTAAGTAGAATTGTGATCACTTAGACTTGAAGACaaatga
acaatttttttttaggttAGATCAGGATTCCTTGACTTGCTAATCCAGTA
AACAGACTAAAGTAGCAGCCATAATATTATaacctttttatttaaatttt
ctttcttcagaCAGACTTAGAGGAGACCAACGAAGATGATTGGAGAACTT
GAATAGTTCTAAataatttttgacatttcagCACTTAAGTAACAGATTGa
aactttggaaaaaattttgaattgctTAGCTTATTGTAAAAATATACAGC
TTAAAGTTTTGATTTCGTATGTACAGCatctgaccccgagaatgtagtaa
accccgagaatgtaggtttctcatttttaagcattgtagccttaacgata
gttcaacttcatgaaaagttgtttcagggcatactgttacatattactta
ttatttctagacataaaattttaacttgaattaacTTTTTCCAACGGAAA
CCTGAATCGAAAttgattggatactacccgaattgggacatttttaaaat
cttctctaaatcgaaatctattggaattaagttatgatgatagggtattt
tcttattcctaatgaactaaggaaacGGGGGGAAATAGTCCATTTccata
tttattgttctaagttagatattttgacgaaaatgtttaacctacctttt
ggggttagttgacctacaatttgggggGAGGGGGCCTTCATAACctgaca
taaaaagtctgtcaaattatataaaacttgtttgttgtactttcatcACA
TGAATCTGNtcataacccgacataaaaagtctgtcaaattatataaaact
tgtttgttgAAGTACAACATGACATGAATCATAAGCCTTATCCACTAAAT
CTAAAGATAGTACGTATTTCATATaaacatggaattattatagacactgg
aaaaacaacgggctgattttttccaatttctcatgtacaagccttgtccg
ctTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNcattaaatgatttttcgtagcattttaattgtatt
tctcatcaaaatacacttatccaattcccaaatgagactttaagttctcc
ttcgagattcaaactcatctagGTAATTACTTATTAAACGTCGTTAAGAC
GTTTTCAAtttcgagaaagatgcaaaaacatgctatgtaccttaagagaa
ctaaattttgcggtttttgctgatttaggcccaaaccgtaaaataaaatt
cccgcaaaatttttcaaatgcgaaaaacaaaggtcgaataattcacagta
cggctctaattttctttcaagtgagaaatccgcaaaattaagttcccgca
aatattaaatcttaaactgcgaaccgcaaaaaattgttcccttaaggtac
tttaatcgtagaaattttagcgagactaattttagcgtatattagcgagt
cgtgaaaatcttgatttttttttaatttattttagcgaatcaagatttca
aaaaatttcgcgcggataaattttagcgaatactcgtattacattattga
ctgagttcgttttctagcatttctttgcactgaaacccttcctgttgata
aaaatatatcaaggcaatataaccagaaatttcgcgtggataaattttag
agatctgtcgattcggcatgttttagcgagatttattttaacgaaaatag
ggaaaactcgctcaaacgctaaaattagtctcgctaaaattttaaattaa
agtACAAGAAATTGtatattgacaccagaaatttttaaacttcaacctca
aaacgAACGATCATCAAACGAACACTTAACTTAAAGGTAGAAATTTCTGC
GACTTTGGCCATAATTCGCGAAATCTTCTTAGGCAAAATTAATATCGAGC
AggcaattcgcgaaaattaattgatttcattcaatttttcagtcGTCAGA
GATAGAAAGTGCTTACAATGATCTGTAGTCAAAGTGTTTCGATCTTTTTT
ATTGCAAAGCGCATATTTGAAATGgttgatttttatttaatttgtggtaa
tttcttccgcgaaacgCGCAATTTTGGAGAGCTTAATTTGCGAAAATTTC
TTGTCCGTAGTAAtatcttcccttaaggtaatcttTTTTGTGGGTCATCC
GGTATGTCATTGTCTGTTGTCAATGATTACAGTCCCAACACTTGTAGTTA
TTATTTGAGATTATGTCGCTACTTGGAAATTACGTAcataaaatttattt
caaactttctaaTTAGGTACAAAGGAGGCGTCGTCTTGCGGGCACAAAAT
TGGAAGATGCATCGGTGAGtcgtaaccccccccccccgatttttcgtttt
tattgcagtaactgaaaaaaatcacatgGGGTTCTAGCAAAGCCCAGCAA
GACTTTCTTGAAtgtaaaaatattaaagaaCTTTTGTTCATGTCACGCCT
GATTAGAATCTTTTCAACTCAGGAATACTTTAATAGGATAAGGGAGCTTC
GCGAAAGTTTcactttttcgcgaaagtttatctcgAAATTCTGCaacttt
tccatttttccaattcctaatttctcgacctctgAAGCTATTGAGCtagc
ctggttaaccaagccagtttttacaagGCCACGATACGGCTAAAGGCAAT
TATGTATAGCGTTATCGGTGCTGTAACtatttttatgatgtacggaattt
taagtttgccttgaaaaactGGCTAGAGCGAATCGTACGTTTATAAAATG
AACGGAGAAGTCGGCGAGACTTCTTTGAAAACGCTTTTCACTTCTCAacg
aaaaactttttgaaggtATTTTTGTATCTGGGACCTCATGCCACTAAatg
ttttccctttttttagaaaaagcttACAAAGAGTTTCTGATGCAGGTCAA
TGAGCACCAACAAAATGATACTTCCGATGCAGCCCTCGGCTTCTGGGTGC
GAAACTTTGGTTTACAGCCCCCAAGAAAAAGAAGCCACAATCAAGGAAAA
CTTACTAGGAGATGattataaaataaatatatgaTAAAATCGTgactaaa
tttctttttgtctcAAGCTCAAAACTTTAA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_037816	XLOC_037816	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00060103-exon-scaffold_334-1491911889:325304..325328	TCONS_00060103-exon-scaffold_334-1491911889:325304..325328	Clytia hemisphaerica	exon
TCONS_00060103-exon-scaffold_334-1510915933:325304..325328	TCONS_00060103-exon-scaffold_334-1510915933:325304..325328	Clytia hemisphaerica	exon
TCONS_00060103-exon-scaffold_334-1575043694:325304..325328	TCONS_00060103-exon-scaffold_334-1575043694:325304..325328	Clytia hemisphaerica	exon
TCONS_00060103-exon-scaffold_334-1491911889:332220..332267	TCONS_00060103-exon-scaffold_334-1491911889:332220..332267	Clytia hemisphaerica	exon
TCONS_00060103-exon-scaffold_334-1510915933:332220..332267	TCONS_00060103-exon-scaffold_334-1510915933:332220..332267	Clytia hemisphaerica	exon
TCONS_00060103-exon-scaffold_334-1575043694:332220..332267	TCONS_00060103-exon-scaffold_334-1575043694:332220..332267	Clytia hemisphaerica	exon
TCONS_00060103-exon-scaffold_334-1491911889:332820..333033	TCONS_00060103-exon-scaffold_334-1491911889:332820..333033	Clytia hemisphaerica	exon
TCONS_00060103-exon-scaffold_334-1510915933:332820..333033	TCONS_00060103-exon-scaffold_334-1510915933:332820..333033	Clytia hemisphaerica	exon
TCONS_00060103-exon-scaffold_334-1575043694:332820..333033	TCONS_00060103-exon-scaffold_334-1575043694:332820..333033	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_334	supercontig	scaffold_334:325304..333033 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.544544	0	0	0.501097	0	0	0	0	21.7647	12.0792	6.48306	8.98481	13.1826	29.2577	13.4671	12.5781	26.2274	15.2894	15.6278	11.2818	17.5496	8.99975	13.9493	10.2314	0	0	13.404	20.2693	21.6981	13.0043

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00060103 vs. Swiss-Prot (Human)

BLAST of TCONS_00060103 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00060103 (transcript) - C. hemisphaerica