TCONS_00060102 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060102
Unique NameTCONS_00060102
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length164

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060102 ID=TCONS_00060102|Name=TCONS_00060102|organism=Clytia hemisphaerica|type=transcript|length=164bp
TCAAATGCAAACGATGAAAATAATCCTAGTGAAAAGACGTCTGACAAGCG
GAAAGTAAAATGCATTCAATGCAACAAGGAGGTTGCCTCTGGTGGTCTTC
CACGCCACATGAGACTAGTGCATGAATGGAGCAATGAAAGGGCCAAAAAT
GTGATAAACCGATT
Run BLAST on NCBI

transcript from alignment at scaffold_334:316645..317087+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060102 ID=TCONS_00060102|Name=TCONS_00060102|organism=Clytia hemisphaerica|type=transcript|length=443bp|location=Sequence derived from alignment at scaffold_334:316645..317087+ (Clytia hemisphaerica)
TCAAATGCAAACGATGAAAATAATCCTAGTGAAGTAAGTTTTAATGTTTC
TGgacccggttgttcaaaagtcgaTTAAATTTCATCCTGATTACCAATAA
TCGAGATTTTAATACTTTCGTCGTCAACAAAGCACGAAGCAATACAAAAA
AGCATTGACATGATGCACTGATTTACCCACGAGACTTTTGTAAAAACAAT
TCAAGTGAAGAAGTCGCCCTTCTATCATAAATCAATTTACACCAACGAGA
AATATACTACTCTAAAAATTCTAGGTGATGATTATTTGTCATAATTACTT
TCCCATTTTTAGAAGACGTCTGACAAGCGGAAAGTAAAATGCATTCAATG
CAACAAGGAGGTTGCCTCTGGTGGTCTTCCACGCCACATGAGACTAGTGC
ATGAATGGAGCAATGAAAGGGCCAAAAATGTGATAAACCGATT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037815XLOC_037815Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060102-exon-scaffold_334-1491911889:316645..316677TCONS_00060102-exon-scaffold_334-1491911889:316645..316677Clytia hemisphaericaexon
TCONS_00060102-exon-scaffold_334-1510915933:316645..316677TCONS_00060102-exon-scaffold_334-1510915933:316645..316677Clytia hemisphaericaexon
TCONS_00060102-exon-scaffold_334-1575043694:316645..316677TCONS_00060102-exon-scaffold_334-1575043694:316645..316677Clytia hemisphaericaexon
TCONS_00060102-exon-scaffold_334-1491911889:316957..317087TCONS_00060102-exon-scaffold_334-1491911889:316957..317087Clytia hemisphaericaexon
TCONS_00060102-exon-scaffold_334-1510915933:316957..317087TCONS_00060102-exon-scaffold_334-1510915933:316957..317087Clytia hemisphaericaexon
TCONS_00060102-exon-scaffold_334-1575043694:316957..317087TCONS_00060102-exon-scaffold_334-1575043694:316957..317087Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_334supercontigscaffold_334:316645..317087 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060102 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top