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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060101 ID=TCONS_00060101|Name=TCONS_00060101|organism=Clytia hemisphaerica|type=transcript|length=185bp
ttACCCACTTTCTTGAAATCGGTCGTCATGTCCCTATTTTCAGTGGATGC
AGAAGAGGCAGAGTTTTATCCCTCTATGGGCAGCAAAAACAATGGAAAGC
TTGCAACAGAACAGTTCGTTCGACAAATAGCTAACCGCAAGAAATACATA
CAAGATGAAAATGAGGCTGCTTCAGAGaGTTCAAC Run BLAST on NCBI transcript from alignment at scaffold_334:314959..316538+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060101 ID=TCONS_00060101|Name=TCONS_00060101|organism=Clytia hemisphaerica|type=transcript|length=1580bp|location=Sequence derived from alignment at scaffold_334:314959..316538+ (Clytia hemisphaerica)
ttACCCACTTTCTTGAAATCGGTCGTCATGTCCCTATTTTCAGTGGATGC
AGAAGAGGCAGAGTTTTATCCCTCTATGGGCAGCAAAAACAATGGAAAGC
TTGCAACAGAACAGTTCGTTCGACAAATAGGTAGAGTTCAAATCCGTCAA
TTTAAGGCTTTCATGAGCAAATAATTACGTTTTAAGAACATTAAAGGACT
CTGAAatacaaaatttcttgaaaattgttttaagtacacttttttaatat
aagaacaaagtcaaaaatcactaaaaataagaacaaattaagaacaatgc
tgagtcTGAAATTACTTAATTTCAAGCAGTTTAGCCTCCAGccgattttc
ccgtatgcttataaaaacaaaagagttCAGGTTgatctttatattatatt
ttgaagactttttgataaaattttaaataacaTTGAATTCAACATAATAG
TGTTTTAAACAACGTATCCTTTAAATTTTAGCTAACCGCAAGAAATACAT
ACAAGATGAAAATGAGGCTGCTTCAGAGGtgaataaatgaatttattttg
acCTTGAAAATAATTCTACAAGAGTAAAAGAAGGAATGCAAGCTATAATA
TCGTTTCCAATTAAATTGGCTAATTTAATACATACTGTCGATTGAATAGC
TATTTTGGTAAAACTGCGATAATAAGAATTTGATAAATTGTTAATCTATA
AGCGTTAACTTAGAGGGAGACAAGCAGTCAAGGTGTCAATCTTTCTAATT
TTCGATCACATGTGTAGTGGTTGATAAATTTAGTTCGTCCTTTTCcatag
cctgggtatccagactcaaaatttcagaaaaaaaaactcttgcctcaaca
tacaaagtttctaaaattttagagtctggtgcaactaaaaaagtctgata
cagttttgaatgacacagtctgtgagtaaacccttgttgacagaatctca
aaactttggaaacccaggcagacacacataattacttaccataaaacctc
ttttacaaactcaataaactttcaaaaccactTTAAAGTACATCAAAGCA
TCAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtatccctgca
gacgagttacttcaaccagaccgtaaacctgagacaagattataaaaaac
tagacggtgaaaaagtttacggtctggatatccaggctaccttTTCCATC
GGAATAACCGCCATAATGTTTTAGCTCCGCTAAAATGAAgaatcaatcaa
aatttattttttttatgtttagaGTTCAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060101-exon-scaffold_334-1491911889:314959..315088 | TCONS_00060101-exon-scaffold_334-1491911889:314959..315088 | Clytia hemisphaerica | exon |
| TCONS_00060101-exon-scaffold_334-1510915933:314959..315088 | TCONS_00060101-exon-scaffold_334-1510915933:314959..315088 | Clytia hemisphaerica | exon |
| TCONS_00060101-exon-scaffold_334-1575043694:314959..315088 | TCONS_00060101-exon-scaffold_334-1575043694:314959..315088 | Clytia hemisphaerica | exon |
| TCONS_00060101-exon-scaffold_334-1491911889:315440..315486 | TCONS_00060101-exon-scaffold_334-1491911889:315440..315486 | Clytia hemisphaerica | exon |
| TCONS_00060101-exon-scaffold_334-1510915933:315440..315486 | TCONS_00060101-exon-scaffold_334-1510915933:315440..315486 | Clytia hemisphaerica | exon |
| TCONS_00060101-exon-scaffold_334-1575043694:315440..315486 | TCONS_00060101-exon-scaffold_334-1575043694:315440..315486 | Clytia hemisphaerica | exon |
| TCONS_00060101-exon-scaffold_334-1491911889:316531..316538 | TCONS_00060101-exon-scaffold_334-1491911889:316531..316538 | Clytia hemisphaerica | exon |
| TCONS_00060101-exon-scaffold_334-1510915933:316531..316538 | TCONS_00060101-exon-scaffold_334-1510915933:316531..316538 | Clytia hemisphaerica | exon |
| TCONS_00060101-exon-scaffold_334-1575043694:316531..316538 | TCONS_00060101-exon-scaffold_334-1575043694:316531..316538 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_334 | supercontig | scaffold_334:314959..316538 + |
Blast
The following BLAST results are available for this feature:
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