TCONS_00060099 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060099
Unique NameTCONS_00060099
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2700

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060099 ID=TCONS_00060099|Name=TCONS_00060099|organism=Clytia hemisphaerica|type=transcript|length=2700bp
ATTTTAGAAAGGttataaaatgaaagaataagTAAAAATGTCTTGAAAGA
AATTACCATCACCATAACGACATGTTCAATAACAAGATCCGTCTGCTCAT
ACCTAACCATCGCACCATCATCGAAAACAACAAAAGCTTCACgGTTTACT
GCGTGGAAGTTGTTTGCGACGGCAAAGTAACCAATGTTGAACATCGATAC
AGCGAGTTCTATGAACTGTACAGAAagCTTTCAAAGATGATCGCAGGAAA
GATTGTCTTTCCACCCAAACGATTATTGAATAATAAAGATGTCAAGTTGA
TTGAAGCCAGAAGGAAAGGTCTCCAACAATACTTACAGACGGTTTTGTAC
ACGTTTCAAGACAACGTACCACCTCGTTTGTTGGATTTTCTCGGTATCCC
TGATTATTATGATCAACAATACGATAATAATTTCACGACTGACGAGTTGA
ATTCATCCTTGGATGGTGACCAGAAATTTGGAAGAAGAAAACACTCTTCC
AGACATTATCAATAAAGGTTGTTTAGAGGGCATCTATGGATAATTTGCTG
TGCAACCATTCCAAGATAAAATTGTAAATAGATTTTTTGATATAGTGAAA
TTTGATATTTGAATGATTACTTAGTAATAGATTATTATAATTACCTGTTT
CCATTTTCCGATTTAAATGATTGCTGATCTATGTGTTGCATTGAAATGTT
AAAACCTTTCTAGTTAACCACCTTCATACTAATAATTTAgcggttttttt
cttttagtgtaAAAAAGTAAAGggacaaaaaagaaaagttacGGTATAAT
CGAATAAGAGATGGCGGCACACATGGAGCGATTCAAGTTGTTGGTGGTCG
GTGATTGCGGTGTGGGCAAATCTTCTTTTGTTTGTGGCGTGGTTCATCAA
ACACCCTTGCAAAACGCCCCTTCTACCATTGGATGCAACGTAGAAGTGTT
ACCTTACAGTTACGATGACAATGGACGACAACGGGATGTATTTTTGGAGT
TTTGGGATGTTGGCGGATCATCTGGTCATCGTAACAGTCGTAGCATCTTT
TATAATAACATCGATGGTTTGATTGTTGTGCATGATTTATCAaacagaaa
atcctttttaaatttacaaaaatgggTTGGGGAAACATTCAACTCAAACC
GTCAGGAATTCACGGGCATCACGGTTTCAGGGAGCGATGGTTCACAATAT
AATGATGACGAGTGTGATGCAATTTCCCATGGAGGTGGTAGAAAGTCAAC
TACCAATATCCCAGTGTTAGTGTTGGGCACAAAGGAAGACCAATGCAACA
ATGCAGGAGAGCAGAAACGAAATGCGCACCATATTGGATTGTCTAATGAT
AGTGACGTCATCTTCTGTTCCATGAACTGTCTACAAGAGGGGCAACTCCA
AAAGAACAGTAATAAATGGCAGTCTTTGCATGCCTTCTTTCATAAAGTAA
TTGATGTTCGGTTGAATGGTGCAACACGTCGAAATACGAACCTCGAAAGT
AATTCCGAGTTTAGAGGCCGAAAGAAGATTTACTGATTTGCTTCAAAGAG
CGATTTGAGAAGATTCAGACTTATTACTTGATAATAATTTATTATACTTT
TTAGATTTCAACAGAATTATTTAAATGATATAAATGCCTTGTTATAATTC
ACCATTAATTTGTTTCGATTTTTCTGACCCTTGAAGCTCTACAGATTGAA
ACTCAAATCGTATTTCTTGTTTAGGTGAGAAAAATAGTAATACAAAATAA
TGAGCACGCTGGAGGATAAACCTGAAGATGAGAAAACCAAAGAACTGTCA
GTTGCACAGAAGGTCCGTATGGAGCGCAACCGCCAGCGTGCCTTGTTGCT
CCGTTCTTCAAGGTTAACAAGTCACCCATATGCCAGTGAGGAGGCGAAGA
CAGTGCACGTAGGAGGGTCAAGTGTCGTGGATAGTGGTGGAGGTTTCTTC
AtcgatgaagatgaaaatgaagaagaagaaatggtCAACGCGGCTGACTT
GCCCAAACAACCTGGTCCTATCATAGATGGTAGTGAAGATCTGTGTGAAG
ATTGTCACAAGAAATTTTCCGACTCCTATTTGTTGAAACATTTTGATGTT
CAAGTTTGTGATGCGTGTAGAAGTTTGCAGAAAGACGAAGCGTACAAAAT
GATTACAAAGACTGATGCAAGACAGaaattttgtctGAAAGATTGCGATT
TCGACATTCGAGAGCCTCCATTGAAGTTCATcgttcgcaaaaatcctcat
aATGATCGCTGGGGTGACATGAAGTTGTACCTGGAACTGCAGGTTCACAA
ACGCGCCATGGAGGTCTGGGGTGACGAAGAGACACTGGAGGagcaaaaag
aaaagagaactgataataaagaaaaagctaaaaggaaaaaatatgaaaaa
cgaATCAAAGAACTTCGAAAAGCAGTACGTACAAGCACTTGGCAGAAGGA
CTTGTCGAAGCACGTGCACGACTATGATTCTGCGAACGAGGTTTACGATG
AAGAAGAGGACGTCTATACAAAGAAGTGTAAAACATGTGATCATCAAATT
ACTTACGAGAAGATGTGAGAAAGAAATATCCCattgtcaaaagaaaaaag
taatcCTCGCAAACAGGTACACCCCTGTACTTGCTTTCCGGGACAAAAGT
ATTCCCGAGAGTATATTTTTATTAGGAAATTGGTACCCTCTACAGGAGAT
Run BLAST on NCBI

transcript from alignment at scaffold_334:232377..243196+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060099 ID=TCONS_00060099|Name=TCONS_00060099|organism=Clytia hemisphaerica|type=transcript|length=10820bp|location=Sequence derived from alignment at scaffold_334:232377..243196+ (Clytia hemisphaerica)
ATTTTAGAAAGGttataaaatgaaagaataagTAAAAATGTCTTGAAAGA
AATTACCATCACCATAACGACATGTTCAATAACAAGATCCGTCTGCTCAT
ACCTAACCATCGCACCATCATCGAAAACAACAAAAGCTTCACggtaaaat
aaaattgttttttgtggCTGGCTAATTACAGTGcagtctctttaattcga
accttttataactcgaacctctttaaACCGAttgtttccttaactcgaac
aagttttctgttCCCTTCCGttattaacaatgccttataaaccttactcc
ataactcgaacaaatttgtgttccccgtgcgtgtttgagttatggagccT
CTACTGTAATGTGCTCTGAGCCCCTCCccggttattaatttttgatttcg
ACCCCTGGACCTTTTTAAGACCCCCATTAaagaattttggaaaatatttc
caGCTATCGATAAAAAAGCCccttattttgctgtaaatagGCAGGTTTCA
GTCTATCATTACCTTATGTCGGAGTATTTTGGAGGTAAATCTTAGAAACC
CGTCAATTAGCACCAGCCCCCTCCCCGACAAAGTTGAAAAAAAGCAATCC
GTAGAGaaacaattttgtaaaatgtCCTTTAATTATGAGACTCTTTCCTG
GTTTAGACTTATCTTAGAGTCTTTTGATATGAAGGAAAAGACCTTATCAT
CCGCATTCACCATGTAAAGTTAACCATACTTCTTTAATCGTTTTACTCGA
CTTATGTTATCCCTTTAGGTTTACTGCGTGGAAGTTGTTTGCGACGGCAA
AGTAACCAATGTTGAACATCGATACAGCGAGTTCTATGAACTGTACAGAA
aggtaaaacaaaaatttttcaaacatatCTTCCCAAAACATCGCAAGTCt
ccaaacttttaaattttaataaagATCTAATCTGAAAGTCAAAGTCCTAT
GGTTTCTGAAAATACCATATTTCCATTATTTCCCAGTTTACCTAATACTA
CTTTTCAAGCTTTCAAAGATGATCGCAGGAAAGATTGTCTTTCCACCCAA
ACGATTATTGAATAATAAAGATGTCAAGTTGATTGAAGCCAGAAGGAAAG
GTCTCCAACAATACTTACAGGTAACTCACAAAAGCCTCGTTGGTCAAGCT
GTTCTCCTAGTTATTGTATTTTGCTAACCCAGAACCCCCTATAAGACTAC
GATACGCACTTATACTTAACAGACTTTAGTTCATCTGGTAGGCGAATGAG
ggagaaaattcgaaaaaacttCCAAACCTCTACTACTCGAATGTCTCAAT
AACTCGAACGGTTTCCTTCCCCTGGGCCTGACTGTATTCGCGGTGATAAA
CCACCTAGTTTAAAATTGTTAATCAAATGATCAATGAataattgaatatt
tttgtttgacTTTTGTTTGACTTTGTATCTATCTTCGCAGACGGTTTTGT
ACACGTTTCAAGACAACGTACCACCTCGTTTGTTGGATTTTCTCGGTATC
CCTGATTATTATGATCAACAATACGATAATAATTTGTGAGTATAACCTTC
CTAACATTTACTGGAAAACCATCTATTGGCCAGTCATAGGTAATTAGTCT
GTTGCAAAATAGGCAAAATAAAAACTGAATAAGAATCAAATTGCATTCGT
GTAAATCTCANTTTGGCAACATCGGCCACTCATAAGTAATTATTCTGTTG
CAAAATAGGCAAAATAAAAACTGAGTAAGAATCAAATTGCACCCGTGTAA
ATCTCATAACATCGGACTCTAAAGCCTAaccttgttttcttgttttcctT
ACGTTAACAGCACGACTGACGAGTTGAATTCATCCTTGGATGGTGACCAG
AAGTAAGAATGTTTGCTGCACCTCATTTTGTGACTGActctttctttttg
tcattccctacttttaggttccaaataaacgcccccctgcttgttaatgt
tttcagctgtcaacgagaaggccccttattttgctctaaatagcctgatt
ttgacctatatttaccttatttttgggttttcagaagtacaattttcaac
ccccccccGACAATtaggggggcccgtttattaaaatcttgaaaattttc
cacccccccTCCCCCGCCAGTTTATTTGGAACTTTTAAGAGTACTTGATG
CtcgttaaaattattttttttgcctgaacaTCTTTTTATTTCGTTCTGTA
TTcgattcattgttttttttcagtggaCATGACAATACATTTTCTGCAAC
CCAAAATATGATTTGCTTTCGTAAGGATGCGTTCCTTGTTCCAACGCTAA
AAGGTACAATTCTAGATTTTGTAGATATAaaccagcggccgaggtagtga
atAGTGTCACTTCGTAGGACACCCCTTAGATCATAATTTCACACCCTATT
AAATTGGCACGGAATTCTTACATTCAAAATCTTCGATACATTTGACCAAG
ATATGTTAGCAATATAGATGACCAGAGTTTCAACGAAGTGTATCAAAGAG
GAAAAACAGTCTTGAAATCAAACTAAGGCTCCTGAAATTCTGAAGGacga
aagttttctttttcgCTCAACCATCATCATATCTCAATATCTTTCTAGTT
CGTAATATCAGCTACAAACAACAAATTACTGTTAACATCGTTTTAAGGCA
TTTCCAGCCTACAATCTTGCTTAAACCTTTGCTTTAACTTCTCTTCTTCG
CAAAGTTAATAAATAAAAAGCGATTTCAGAGGATATGTTATGACCATTTA
CCTTACATTTTCACCTTTTCAGATTTGGAAGAAGAAAACACTCTTCCAGA
CATTATCAATAAAGGTTGTTTAGAGGGCATCTATGGATAATTTGCTGTGC
AACCATTCCAAGATAAAATTGTAAATAGATTTTTTGATATAGTGAAATTT
GATATTTGAATGATTACTTAGTAATAGATTATTATAATTACCTGTTTCCA
TTTTCCGATTTAAATGATTGCTGATCTATGTGTTGCATTGAAATGTTAAA
ACCTTTCTAGTTAACCACCTTCATACTAATAATTTAgcggtttttttctt
ttagtgtaAAAAAGTAAAGggacaaaaaagaaaagttacGGTATAATCGA
ATAAGAGATGGCGGCACACATGGAGCGATTCAAGTTGTTGGTGGTCGGTG
ATTGCGGTGTGGGCAAATCTTCTTTTGTTTGTGGCGTGGTTCATCAAACA
CCCTTGCAAAACGCCCCTTCTACCATTGGATGCAACGTAGAAGTGTTACC
TTACAGTTACGATGACAATGGACGACAACGGGATGTATTTTTGGAGTTTT
GGGATGTTGGCGGATCATCTGGTCATCGTAACAGTCGTAGCATCTTTTAT
AATAACATCGATGGTTTGATTGTTGTGCATGATTTATCAaacagaaaatc
ctttttaaatttacaaaaatgggTTGGGGAAACATTCAACTCAAACCGTC
AGGAATTCACGGGCATCACGGTTTCAGGGAGCGATGGTTCACAATATAAT
GATGACGAGTGTGATGCAATTTCCCATGGAGGTGGTAGAAAGTCAACTAC
CAATATCCCAGTGTTAGTGTTGGGCACAAAGGAAGACCAATGCAACAATG
CAGGAGAGCAGAAACGAAATGCGCACCATATTGGATTGTCTAATGATAGT
GACGTCATCTTCTGTTCCATGAACTGTCTACAAGAGGGGCAACTCCAAAA
GAACAGTAATAAATGGCAGTCTTTGCATGCCTTCTTTCATAAAGTAATTG
ATGTTCGGTTGAATGGTGCAACACGTCGAAATACGAACCTCGAAAGTAAT
TCCGAGTTTAGAGGCCGAAAGAAGATTTACTGATTTGCTTCAAAGAGCGA
TTTGAGAAGATTCAGACTTATTACTTGATAATAATTTATTATACTTTTTA
GATTTCAACAGAATTATTTAAATGATATAAATGCCTTGTTATAATTCACC
ATTAATTTGTTTCGATTTTTCTGACCCTTGAAGCTCTACAGATTGAAACT
CAAATCGTATTTCTTGTTTAGGTGAGAAAAATAGTAATACAAAATAATGA
GCACGCTGGAGGATAAACCTGAAGATGAGAAAACCAAAGAACTGTCAGTT
GCACAGAAGGTCCGTATGGAGCGCAACCGCCAGCGTGCCTTGTTGCTCCG
TTCTTCAAGGTTAACAAGTCACCCATATGCCAGTGAGGAGGCGAAGACAG
TGCACGTAGGAGGGTCAAGTGTCGTGGATAGTGGTGGAGGTTTCTTCAtc
gatgaagatgaaaatgaagaagaagaaatggtCAACGCGGCTGACTTGCC
CAAACAACCTGGTAAGTTTTCTCACTGGTTAACTCTCCCTTTCGCATCAC
AACCAGACACAATAACACACAGGTGTCAGAAATATAAATACTATGCTTGA
AATTATACAATTTAGCCgttgtcttattttttaatttgaccTGCTTTTTT
AAGAGAAACTGCGATTATACATTATTCATCTTTATATTTTAGGTCCTATC
ATAGATGGTAGTGAAGATCTGTGTGAAGATTGTCACAAGAAATTTTCCGA
CTCCTATTTGTTGAAACATTTTGATGTTCAAGTTTGTGATGCGTGTAGGT
TAGTTTGCTTTGTTATCTTTACTTGATTCTAGATTCCAAAATTTATCTTA
ATAATATCTTAGAGTTAAGTCCAAAGCACGTGGGCACGGGTTGATTACCA
ATTTGTTctagtaaatgaaaaaagaaacgtCTCTAAGAGAAGTAAATTCC
TTTTCTCTTTATGATTTATAAAACAGTAATTTCTGATCTGCGAGGGATTT
TTTTGACTAGAGTTGTAAAAATCCATGCGTAATCTATCGAATTTTTCGAT
TATCGAATtaatcgaaactaatcgaagCTAATCGAAGCCATTATATTTCG
ATTAGTCGAAATAATCGAAGCCTAATCNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNCATTCATGTTCAATGGATGGTCCGCTCAACG
AtgtgtaaagcccgaagggctagatctctagcttttgctgaaaattgtGT
CGAAGTTAGATAGGAAATCCTaactaagtcacgtgacattataatagaat
ttcagcgcttgaccaatcagaagcttagCCAATTTTCGGAAACAATAGCA
GAAATACTTTTTCCAATATGtactcactttttttcttgcttaACCTGAGA
ACAGATTGtaattgttttctgcccaccacgctgaagctctaaagggatgg
gcgaaaacaaacaatctgacgactTTGTTGGACGGATTCATGCGAGACCG
CGTTCAAAACATCCTGGAAACTAGCGACACCGCTTCAAAAtttgttttga
ttttgctgcAAAGGATTATGGGTAGATTATTTTTGATAGATTTGGCGGGT
GAGAAATGGCTCAAATGGGGACCCGTTTTTACAACGAGCACCTTGTTGTA
AAACTTTCAAAGCGGTATGGCCAATGTCCACAGATGTATATTTCGCATCG
TACCtttagagcaaagcgtgtcgaTNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCAAGTCCGTTTGTCCTAGATGTCCGTCGAACCTTTGCACCAACTC
AACCCCTTTGAACATTTGATATGTGATTGATTTCGTTGGTTCTAGTGTTG
GTGAAGGAGCATTTGATGACAGAGAAAGACACCGAACAAAAAAactgata
tttttcaaattgctaATTTCAGCCTCGACAGCTGAATGAGCTGTTTTTGT
ACCGTACCGACGAATAATTCGAACAACTTTACCATATGTAAATTGACGCG
ATTTTGTGTCTAAGAAACAGCATTCATCGTTGATTTTGATGTTGGTTTCG
AGCGTTGAGGTGTTGTTATTGAGCTGCTCAAAAAACGAGGTTTGGTTACT
TGATTTCCATCTTTCCATTCTGCTCGCAGCTGGGCAATAAATTTTGCCGT
CGGTCAGAGACAGAAATCGAGCAATATGATAGACTGTACCCTCGTATTCT
ACATACATTGGGTTTGAGCGGTTTGttcgatttgttgattttcttgtgTT
GGCATTTGATCCTTGGTCCAGGAGATCTTTCATAGTTAAATTGGAATCAT
TCGCTAAGCAGTTGGTGCTTCAAGAGGTATATCCGTTCTAGAAATGAAAC
AACACAGCATTGAAAGTTGAATGTTACCTCTCGACCCAGtggtaaaaaaa
caaacaaaagaaatggAAATACAGTCAAGCAAACTACTGAAATACGATAA
AAAATAATGGACTTTCCTCGCTTTCCTAACCCTGCTGGAAGAAATGCAAC
CCAGCTCGAAAAAACTTTCATCACATGTTATGAAACCCATTACTAGTAAC
AATATTGATTGAATAGTTTGAagatagtttgttcttatataaaaaaacgt
gtatgaattTTTGGGACACTGTAAAGTTTTTCGGGATTCCTTATAGTTAA
TATATATCAGCACAGTCTTTTGGCATGTTTCTTGCAAGTGTGCTTTTTGA
CTAGAGTAGGCCAAGTTCTGTAAAACCGGGGTATAcatcttttatttcaa
tttctcaCCCGGGTTGAGATTATTCAGCTTCAATTTTCTGGGGTGGCTGG
GTGATTTCTTCCCTCGAATAGGCAAACACAAATTATTCTGCCATAGAATG
TAAAGATTTTTAAGCACCACACAAAACCATAGAACGACGACGAGGGACCG
ATAACAAACACCAAAATGTTCATCACCAGGCTCGGAAGGTAAAAAGATCT
TTCACGGCTATCAGATTTTAACCAAATTTGACCCGATAATACCTTGAGGG
AAGAAATTTAATTTCACGGTTGAGAGAATTTTCTGTTCAAAATATGgctt
attttgccctaaaaataccaattttcgggtaatttctttcaatcataaaa
atatttgtgtttCGCGGATTTGCCAAANNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAttatcgaatctcaatc
gaaacCTATCGAAAGTTAATCGAAGttatcgaacataatcgaatatatCG
ATATTAATCGAAGCTATCGAACATTAATCGAAGCTTATCGATAGCtaatc
gaagtaatcgaatggtaatcgaactaattgagaaaaaccttggaaaattc
gattaattcgattacGGCTCGATAGTTTCGATAAATTCGATTTAAAATCG
AattcgattttgttcgatagATTACGCCTGGACTACACTAACGGACTTTA
CATACATTTTATCTGAATTCTACCAAAAGTTAACCAATCGAGACGCAACC
TTTGCTTTCATTTTAGAAGTTTGCAGAAAGACGAAGCGTACAAAATGATT
ACAAAGACTGATGCAAGACAGgtatttacaattttcatgtgtcttttttt
gcttttcGTTGCCCTCTCTCGAGGTTATCAGCTTTTTGCAGTATATTAAT
TTGAAACCTATTAACCAATATTCCGtctcaattttagaaattttgtctGA
AAGATTGCGATTTCGACATTCGAGAGCCTCCATTGAAGTTCATcgttcgc
aaaaatcctcataATGATCGCTGGGGTGACATGAAGTTGTACCTGGAACT
GCAGGTGAAACCTTTCTTTGCGTAAACTCCAATAAAATTCCAAACAGAAA
GAACTAGAAAGCGACAATAAAACTTGCATATTTTGCACCGTATAATGCcg
taaaaaattaataaaagagATACACAAACAGAAACTAGTGAAAATTAATC
AATTACACCGATAATTTGGAATTCTATTTTGTTATTCATTCTAACTTTCT
CATTTTGTATCAGGTTCACAAACGCGCCATGGAGGTCTGGGGTGACGAAG
AGACACTGGAGGagcaaaaagaaaagagaactgataataaagaaaaagct
aaaaggaaaaaatatgaaaaacgaATCAAAGGTTTGTGACAGAggttata
catgtttttttagaaGCATTGTTGCATAAAAATTTTAAGCATATCCTAAG
CATTATCTGAGCCTATATTATCCGGCTGGAATTTACCTTAAATTTTGCTT
AGTTcgagcaattttcagccttgtcAATCTCTTGATCTAAGCATCTCCCA
GccagtttttgaatttttgtatgcttatacaAAACTTGTGCTTTTGGTAA
CCTCATTTGGTGGCTTTCATTGATTGAGCCGTCAACTCGTTTTCAACTTG
TCAACTCCTACTGGAGTCTTTTTCATGCTTTACGAATATGTTAGGGGTTA
AATGACATGATGATTAATGTGACGGGGAAGTATTGGATACATTAAACTGT
ACTTGACGTTCTTCAACAGTTTGCCCTACCGTTCTCTACTTTTTCGTAAA
TTGGGCAGTTTCAAGAAAACACCATTACTTCTGTGGACGActggggaaat
tttgaaaaggttCCGGAAGATGCAGGATTTTCCTAATTATTTGGTCATCC
GCATCAAAAAGATCTTGAATGTTACGGAAATCATAAAGTTTTTCATAATT
TAGTTGTTAcggaaaatccattttttccaCAGGGGGGTAACGGACTATAA
CTGGAACCACCCATTTAGCCTAGACTACCAAGTCTTCTGATAGAATTATT
GTTTACCATATTATTCTCTATCGGATGTAGAACTTCGAAAAGCAGTACGT
ACAAGCACTTGGCAGAAGGACTTGTCGAAGCACGTGCACGACTATGATTC
TGCGAACGAGGTTTACGATGAAGAAGAGGACGTCTATACAAAGAAGTGTA
AAACATGTGATCATCAAATTACTTACGAGAAGATGTGAGAAAGAAATATC
CCattgtcaaaagaaaaaagtaatcCTCGCAAACAGGTACACCCCTGTAC
TTGCTTTCCGGGACAAAAGTATTCCCGAGAGTATATTTTTATTAGGAAAT
TGGTACCCTCTACAGGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037812XLOC_037812Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060099-exon-scaffold_334-1491911889:232377..232519TCONS_00060099-exon-scaffold_334-1491911889:232377..232519Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1510915933:232377..232519TCONS_00060099-exon-scaffold_334-1510915933:232377..232519Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1575043694:232377..232519TCONS_00060099-exon-scaffold_334-1575043694:232377..232519Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1491911889:233145..233228TCONS_00060099-exon-scaffold_334-1491911889:233145..233228Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1510915933:233145..233228TCONS_00060099-exon-scaffold_334-1510915933:233145..233228Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1575043694:233145..233228TCONS_00060099-exon-scaffold_334-1575043694:233145..233228Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1491911889:233386..233496TCONS_00060099-exon-scaffold_334-1491911889:233386..233496Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1510915933:233386..233496TCONS_00060099-exon-scaffold_334-1510915933:233386..233496Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1575043694:233386..233496TCONS_00060099-exon-scaffold_334-1575043694:233386..233496Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1491911889:233817..233911TCONS_00060099-exon-scaffold_334-1491911889:233817..233911Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1510915933:233817..233911TCONS_00060099-exon-scaffold_334-1510915933:233817..233911Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1575043694:233817..233911TCONS_00060099-exon-scaffold_334-1575043694:233817..233911Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1491911889:234187..234228TCONS_00060099-exon-scaffold_334-1491911889:234187..234228Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1510915933:234187..234228TCONS_00060099-exon-scaffold_334-1510915933:234187..234228Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1575043694:234187..234228TCONS_00060099-exon-scaffold_334-1575043694:234187..234228Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1491911889:235149..236687TCONS_00060099-exon-scaffold_334-1491911889:235149..236687Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1510915933:235149..236687TCONS_00060099-exon-scaffold_334-1510915933:235149..236687Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1575043694:235149..236687TCONS_00060099-exon-scaffold_334-1575043694:235149..236687Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1491911889:236869..236974TCONS_00060099-exon-scaffold_334-1491911889:236869..236974Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1510915933:236869..236974TCONS_00060099-exon-scaffold_334-1510915933:236869..236974Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1575043694:236869..236974TCONS_00060099-exon-scaffold_334-1575043694:236869..236974Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1491911889:241593..241647TCONS_00060099-exon-scaffold_334-1491911889:241593..241647Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1510915933:241593..241647TCONS_00060099-exon-scaffold_334-1510915933:241593..241647Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1575043694:241593..241647TCONS_00060099-exon-scaffold_334-1575043694:241593..241647Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1491911889:241764..241880TCONS_00060099-exon-scaffold_334-1491911889:241764..241880Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1510915933:241764..241880TCONS_00060099-exon-scaffold_334-1510915933:241764..241880Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1575043694:241764..241880TCONS_00060099-exon-scaffold_334-1575043694:241764..241880Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1491911889:242090..242207TCONS_00060099-exon-scaffold_334-1491911889:242090..242207Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1510915933:242090..242207TCONS_00060099-exon-scaffold_334-1510915933:242090..242207Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1575043694:242090..242207TCONS_00060099-exon-scaffold_334-1575043694:242090..242207Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1491911889:242907..243196TCONS_00060099-exon-scaffold_334-1491911889:242907..243196Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1510915933:242907..243196TCONS_00060099-exon-scaffold_334-1510915933:242907..243196Clytia hemisphaericaexon
TCONS_00060099-exon-scaffold_334-1575043694:242907..243196TCONS_00060099-exon-scaffold_334-1575043694:242907..243196Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_334supercontigscaffold_334:232377..243196 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.66803	5.10512	1.64214	1.22062	0.419584	0.151793	0.647327	0.617641	1.15307	0.70783	1.33533	0.646145	0.205954	0.41488	2.72227	1.77649	1.7848	2.44134	0.927851	1.00994	1.47682	2.26877	4.8862	4.05175	0	0	0.21391	0.556935	2.90359	3.89618
Blast
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BLAST of TCONS_00060099 vs. Swiss-Prot (Human)
Match: XPA (DNA repair protein complementing XP-A cells OS=Homo sapiens GN=XPA PE=1 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 3.604e-55
Identity = 100/186 (53.76%), Postives = 142/186 (76.34%), Query Frame = 1 
Query: 2008 QPGPIIDGSEDLCEDCHKKFSDSYLLKHFDVQVCDACRSLQKDEAYKMITKTDARQKFCLKDCDFDIREPPLKFIVRKNPHNDRWGDMKLYLELQVHKRAMEVWGDEETLEEQKEKRTDNXXXXXXXXXXXXXXXXXXAVRTSTWQKDLSKHVHDYDSANEVYDEEEDVYTKKCKTCDHQITYEKM 2565
            QPGP+++    +CE+C K+F DSYL+ HFD+  CD CR    D+ +K+ITKT+A+Q++ LKDCD + REPPLKFIV+KNPH+ +WGDMKLYL+LQ+ KR++EVWG +E LEE KE R +N+EK K+KK++K++KELR+AVR+S W+++   H H+Y     +   E+D+Y K C  C H++TYEKM
Sbjct:   93 QPGPVMEFDYVICEECGKEFMDSYLMNHFDLPTCDNCRD--ADDKHKLITKTEAKQEYLLKDCDLEKREPPLKFIVKKNPHHSQWGDMKLYLKLQIVKRSLEVWGSQEALEEAKEVRQENREKMKQKKFDKKVKELRRAVRSSVWKRETIVHQHEYGPEENL---EDDMYRKTCTMCGHELTYEKM 273
The following BLAST results are available for this feature:
BLAST of TCONS_00060099 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
XPA3.604e-5553.76DNA repair protein complementing XP-A cells OS=Hom... [more]
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