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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060096 ID=TCONS_00060096|Name=TCONS_00060096|organism=Clytia hemisphaerica|type=transcript|length=1374bp
TTCACTTATATTGAGAGTCGATGCCATCTTCTTTACTTCGATCTGACCTT
TTTTACTTTAAGATTCTTTAAATCATGTGTTCGTGAACCATTCATTTTCT
GATATTATTTAatagtttttcaattttactaAAAAGGTAATTTTCTTAGT
TATAAATTGTGGAGAAATATTGCAATGGGTAGatgaaaagttatttaaaa
ttgAGTTGAACATTGGAAAAACAGAAACTAACCACACAGTCTTAAAtact
taaaaacttttcttttaaaattcccTACACCTGAATGTTTATaaaacaac
ttttttacaaaattatatttcattaaaaattgtaaaaacttgAGAGGACT
TCCTTTAATTGCACAAAAACatgaagaaattaaaaatgtcTGGGCTGAAT
AAATAATATCTTAATAGTTATAAAATGAGAGTTGAAAATTCAATGAGGCT
TTAGGcctacaaactttcgcgagcagaagcTTTcgtgattttcgcgaatt
ttagtacttttcgcgaaagtaaatgtctttgaaatttcttgagaggcaaa
ttcgcgaaaatttatactcgcgaaaaaaaaactgaaaagaaaatttactc
aaattttcctctttCATGATAACAAGGATAAAATTTAGTGTAGATAATAT
GCAAAATACCATCAATTGTGGTTTGAATACATTTGAACGATCAAAACACT
AGTTTTATGCACTGAAAACTTGaattttctattaaaaataTACCTCATTC
GCGAAAGTATATGCtggcgaaaaaaaatatttttgtcaaattcgcgaaag
cAAATGTCGTAGGTTTCGCGATTTTACgacctcgcgaaaatttctgctcg
cgaaagtttgtatgcCTAAAGTACTTGATTAAACCAGTAGTCCATCAAAG
GGAAGCAAGTTGTTCCTCCAGTTGTTTCAATTCTTGTAAAAAGCTTTCTT
CTTTCGCAAGTTTATCCAGCTATAAAAGAAGTGggaaacaaaaaagtaaa
agataGTAATGATATGGAATAATATGGGGGTTGGTATCAGCTGACAACCA
CAAAGTATTCTCCATCCGGTTCCAAAGTATgcgtttgaataaaaaattcg
TCTCCTCACCTGACACTGTTGCATATCTTCACCTTCTTCTTGCTTTTGCT
TCAGTTTGTTTATCTGTTCAACTTTCTTTCGCATTTTCTTCACCTCTTTT
TCCACTGAGCTCTTTTCATCCAGAGAGTTCTTTATTGAGTCGTTTGAAAC
CTGCTCTTCGCTTTTGTGAGGCTTAGAAACAGAGGTGGCTTTTGAGAGGT
CCAACCCTTCATTGACCTTAACTTTATTTAAACGATTCATGCTTTCTGCT
ATTTCTTCCGATTCAAGTTGaata Run BLAST on NCBI transcript from alignment at scaffold_334:152490..153925+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060096 ID=TCONS_00060096|Name=TCONS_00060096|organism=Clytia hemisphaerica|type=transcript|length=1436bp|location=Sequence derived from alignment at scaffold_334:152490..153925+ (Clytia hemisphaerica)
TTCACTTATATTGAGAGTCGATGCCATCTTCTTTACTTCGATCTGACCTT
TTTTACTTTAAGATTCTTTAAATCATGTGTTCGTGAACCATTCATTTTCT
GATATTATTTAatagtttttcaattttactaAAAAGGTAATTTTCTTAGT
TATAAATTGTGGAGAAATATTGCAATGGGTAGatgaaaagttatttaaaa
ttgAGTTGAACATTGGAAAAACAGAAACTAACCACACAGTCTTAAAtact
taaaaacttttcttttaaaattcccTACACCTGAATGTTTATaaaacaac
ttttttacaaaattatatttcattaaaaattgtaaaaacttgAGAGGACT
TCCTTTAATTGCACAAAAACatgaagaaattaaaaatgtcTGGGCTGAAT
AAATAATATCTTAATAGTTATAAAATGAGAGTTGAAAATTCAATGAGGCT
TTAGGcctacaaactttcgcgagcagaagcTTTcgtgattttcgcgaatt
ttagtacttttcgcgaaagtaaatgtctttgaaatttcttgagaggcaaa
ttcgcgaaaatttatactcgcgaaaaaaaaactgaaaagaaaatttactc
aaattttcctctttCATGATAACAAGGATAAAATTTAGTGTAGATAATAT
GCAAAATACCATCAATTGTGGTTTGAATACATTTGAACGATCAAAACACT
AGTTTTATGCACTGAAAACTTGaattttctattaaaaataTACCTCATTC
GCGAAAGTATATGCtggcgaaaaaaaatatttttgtcaaattcgcgaaag
cAAATGTCGTAGGTTTCGCGATTTTACgacctcgcgaaaatttctgctcg
cgaaagtttgtatgcCTAAAGTACTTGATTAAACCAGTAGTCCATCAAAG
GGAAGCAAGTTGTTCCTCCAGTTGTTTCAATTCTTGTAAAAAGCTTTCTT
CTTTCGCAAGTTTATCCAGCTATAAAAGAAGTGggaaacaaaaaagtaaa
agataGTAATGATATGGAATAATATGGGGGTTGGTATCAGCTGACAACCA
CAAAGTATTCTCCATCCGGTTCCAAAGTATgcgtttgaataaaaaattcg
TCTCCTCACCTGACACTGTTGCATATCTTCACCTTCTTCTTGCTTTTGCT
TCAGTTTGTTTATCTGTTCAACTTTCTTTCGCATTTTCTTCACCTCTTTT
TCCACTGAGCTCTTTTCATCCAGAGAGTTCTTTATTGAGTCGTTTGAAAC
CTGCTCTTCGCTTTTGTGAGGCTTAGAAACAGAGGTGGCTTTTGAGAGGT
CCAACCCGTCATTGACCTTAACTTTATTCAAACGATGCATGCTTTCTGCT
ATTTNCGGAGGTCCAACCCTTCATTGACCTTAACTTTATTTAAACGATTC
ATGCTTTCTGCTATTTCTTCCGATTCAAGTTGaata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060096-exon-scaffold_334-1491911889:152490..153787 | TCONS_00060096-exon-scaffold_334-1491911889:152490..153787 | Clytia hemisphaerica | exon |
| TCONS_00060096-exon-scaffold_334-1510915933:152490..153787 | TCONS_00060096-exon-scaffold_334-1510915933:152490..153787 | Clytia hemisphaerica | exon |
| TCONS_00060096-exon-scaffold_334-1575043694:152490..153787 | TCONS_00060096-exon-scaffold_334-1575043694:152490..153787 | Clytia hemisphaerica | exon |
| TCONS_00060096-exon-scaffold_334-1491911889:153850..153925 | TCONS_00060096-exon-scaffold_334-1491911889:153850..153925 | Clytia hemisphaerica | exon |
| TCONS_00060096-exon-scaffold_334-1510915933:153850..153925 | TCONS_00060096-exon-scaffold_334-1510915933:153850..153925 | Clytia hemisphaerica | exon |
| TCONS_00060096-exon-scaffold_334-1575043694:153850..153925 | TCONS_00060096-exon-scaffold_334-1575043694:153850..153925 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_334 | supercontig | scaffold_334:152490..153925 + |
Blast
The following BLAST results are available for this feature:
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