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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060094 ID=TCONS_00060094|Name=TCONS_00060094|organism=Clytia hemisphaerica|type=transcript|length=1956bp
TTGTATCCAGCTGGATATGGAGGCTGTCAAGTAGTCGAATTAAAAGTGTA
GAAAGTTGAAATAAGCCAgtacgatttaaaaaaaatagcaCAAGGAACAG
GAATGACAACTGAGCAAACCGAGGAAGTCCATCTAAATAATGACAATGAT
AATGacaatgatgaaaaagaaagaagatcGCAATATCAATATCGCTGGTA
CAATATTAATCCGAAAGCCTTTCCTGCAAAATGTTCGTATTTCTTTGAGA
AAGCTCGTGTTGTTGGTTTCTCGCCGAACTTGGTAATGTTTTTGACCAGT
ATTGGGTTGAACAAAGCTGAAGCTGGATTCATTGGCGGTTTGAAGATGGT
TGGTATGTTATCAGGGGGTATCTTTTGGGGATACATAGCTGATAAATGGC
ATTGTCATCGGACAATTGTCTTGTGCACATGCGTCATGTCATTAATGAGC
ATCTTGACTCAACCTCTAATTGGTCTTCACTATGGTAACGCAGAAACAAA
CAAATGCCCTACCAGCGTTAGTATGGGAAATACCAATGCAAGTGTGTCGA
TACTTAAAGATTGTGTCGGTGATGAAAATTGCACCTTTGCCAATACAACC
GAACGTCCGATTCTGCCAAGATTTGCAAACAACGCAACCAAAAAATCACC
GGATACTAAGTTAGATTCCAGATTCAACAGCTTTTTTGTGGCAATGCTTT
TGATCAATATTGCAATTGCATTTGCCGAGGCGAACAGTACATCTTTTATC
GATACTGGTACATTACGTCAAAGTCAATTATCGAAAGACAGACCTATTGT
GTTTGGACGGCAGCGAATGTTTGGTTCTTTCGGATCGGGTTTTGGGATAT
TGGCTTCAAACATTGCTGTAGACTACTTTCCTGAATCCAACATTACCTGC
TATACCGGTATCTTCGTTGTGTACGCCCTCTTTACCTGTTTGTGTTGTTT
CTTCACGCTACTCTTGTATCGAGGCCTTTCTTTCAGGAAAGATGCTAATG
GTGAAGACCCCGTGGATGCGGAAGACGCTCCATTACAAGAAACAGTTGGC
AAGAAACCAGAAGATGGTGAAACGAAAGGTTTTAATAAACTTCTCTTGAA
GACAATATTACGCCACGATGTTTTATTTTTCTACGCAACAACGCTTATCA
GCGGTCTACAATATTCCCAAgtgctttcttttctttttccttatttGAAA
GAAATGGATGGCTCGTCTATTCATATGACGTTATCGATCGTGCTCCCCGC
TATTTCTGCGAGTGTTGGATTTGCATTCTGTAAGGAAATTATTAACATTC
TTGGCGGCACTTGGAATTCCATTTTATTCTCTTTTGCCATGTATTTCTTG
AGATACTTTACGATGGGTTTTATGGAGAGTGCGTGGCTGGTCGTTGCCGT
TCAAGTTCTACATTGTTTTTCAACTACCCTTTTTCAAGCAGCCGGGTTGA
ATCACTTGAAAGAAACAAGCCCTTTACCCATTATGACGACCATGATATCA
TTATTCAACACTCTTTTATTTGGTGTAGGAACAATCATTGGTTCAAGCCT
CAGTGGAGTAGTCTATGAACGGTACGGTGGTCGGGTCATGTATAAAGGCA
CAGGTCTTCTGGCACTAGCATGGTTTTGTGTTTCAGTCATATACGTTGCG
CTTATAAGgaaacagaaaaaactaatggcGGAAGATGAACACCATGAAAT
GTAAAACTTGGTAAATAACAGTAACGGTTATACCTATTTTATATTGTAGT
GGTATTGTTCATGATATATTTAGTTAAAACATGAATGGTTTAAACAAAAA
ACCATATCGACGTGTATAGATGTGTACAGCATTCGTTGCAAAAAGACTTT
TGGTTTTTTATTTAAGTAATAGTAACTGGTAAACCCTTAGGATCCGTAGC
ATATATCGTTGGAAGTTTTGGCAAAATAGTTGAACCGcaaaatgagtaaa
aatttG Run BLAST on NCBI protein sequence of TCONS_00060094-protein >TCONS_00060094-protein ID=TCONS_00060094-protein|Name=TCONS_00060094-protein|organism=Clytia hemisphaerica|type=polypeptide|length=533bp
MTTEQTEEVHLNNDNDNDNDEKERRSQYQYRWYNINPKAFPAKCSYFFEK
ARVVGFSPNLVMFLTSIGLNKAEAGFIGGLKMVGMLSGGIFWGYIADKWH
CHRTIVLCTCVMSLMSILTQPLIGLHYGNAETNKCPTSVSMGNTNASVSI
LKDCVGDENCTFANTTERPILPRFANNATKKSPDTKLDSRFNSFFVAMLL
INIAIAFAEANSTSFIDTGTLRQSQLSKDRPIVFGRQRMFGSFGSGFGIL
ASNIAVDYFPESNITCYTGIFVVYALFTCLCCFFTLLLYRGLSFRKDANG
EDPVDAEDAPLQETVGKKPEDGETKGFNKLLLKTILRHDVLFFYATTLIS
GLQYSQVLSFLFPYLKEMDGSSIHMTLSIVLPAISASVGFAFCKEIINIL
GGTWNSILFSFAMYFLRYFTMGFMESAWLVVAVQVLHCFSTTLFQAAGLN
HLKETSPLPIMTTMISLFNTLLFGVGTIIGSSLSGVVYERYGGRVMYKGT
GLLALAWFCVSVIYVALIRKQKKLMAEDEHHEM Run BLAST on NCBI transcript from alignment at scaffold_334:66028..68255+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060094 ID=TCONS_00060094|Name=TCONS_00060094|organism=Clytia hemisphaerica|type=transcript|length=2228bp|location=Sequence derived from alignment at scaffold_334:66028..68255+ (Clytia hemisphaerica)
TTGTATCCAGCTGGATATGGAGGCTGTCAAGTAGTCGAATTAAAAGTGTA
GAAAGTTGAAATAAGCCAgtacgatttaaaaaaaatagcaCAAGGAACAG
GAATGACAACTGAGCAAACCGAGGAAGTCCATCTAAATAATGACAATGAT
AATGacaatgatgaaaaagaaagaagatcGCAATATCAATATCGCTGGTA
CAATATTAATCCGAAAGCCTTTCCTGCAAAATGTTCGTATTTCTTTGAGA
AAGCTCGTGTTGTTGGTTTCTCGCCGAACTTGGTAATGTTTTTGACCAGT
ATTGGGTTGAACAAAGCTGAAGCTGGATTCATTGGCGGTTTGAAGTAAGT
AGTCTTCCATCATTTTTTTGTAACTTTGGTAACGCATGATCTCGCGTTCC
TTTGAATCTTGGGGCACCTATCCAGCATCCATCTTAAACATCTATCAACG
AATGCACAATGTGACGTatctttcaaccaataagatttgaTTATTTCATG
GTTTAATACACTTGAAAGATTCTGCCTACCTTACATCTCCAAGATTGTTC
CTTTTTTGGGGGCAAAAAGCTgacttttctttgaaaatgactgaaaattt
tgtctttttatcatAGGATGGTTGGTATGTTATCAGGGGGTATCTTTTGG
GGATACATAGCTGATAAATGGCATTGTCATCGGACAATTGTCTTGTGCAC
ATGCGTCATGTCATTAATGAGCATCTTGACTCAACCTCTAATTGGTCTTC
ACTATGGTAACGCAGAAACAAACAAATGCCCTACCAGCGTTAGTATGGGA
AATACCAATGCAAGTGTGTCGATACTTAAAGATTGTGTCGGTGATGAAAA
TTGCACCTTTGCCAATACAACCGAACGTCCGATTCTGCCAAGATTTGCAA
ACAACGCAACCAAAAAATCACCGGATACTAAGTTAGATTCCAGATTCAAC
AGCTTTTTTGTGGCAATGCTTTTGATCAATATTGCAATTGCATTTGCCGA
GGCGAACAGTACATCTTTTATCGATACTGGTACATTACGTCAAAGTCAAT
TATCGAAAGACAGACCTATTGTGTTTGGACGGCAGCGAATGTTTGGTTCT
TTCGGATCGGGTTTTGGGATATTGGCTTCAAACATTGCTGTAGACTACTT
TCCTGAATCCAACATTACCTGCTATACCGGTATCTTCGTTGTGTACGCCC
TCTTTACCTGTTTGTGTTGTTTCTTCACGCTACTCTTGTATCGAGGCCTT
TCTTTCAGGAAAGATGCTAATGGTGAAGACCCCGTGGATGCGGAAGACGC
TCCATTACAAGAAACAGTTGGCAAGAAACCAGAAGATGGTGAAACGAAAG
GTTTTAATAAACTTCTCTTGAAGACAATATTACGCCACGATGTTTTATTT
TTCTACGCAACAACGCTTATCAGCGGTCTACAATATTCCCAAgtgctttc
ttttctttttccttatttGAAAGAAATGGATGGCTCGTCTATTCATATGA
CGTTATCGATCGTGCTCCCCGCTATTTCTGCGAGTGTTGGATTTGCATTC
TGTAAGGAAATTATTAACATTCTTGGCGGCACTTGGAATTCCATTTTATT
CTCTTTTGCCATGTATTTCTTGAGATACTTTACGATGGGTTTTATGGAGA
GTGCGTGGCTGGTCGTTGCCGTTCAAGTTCTACATTGTTTTTCAACTACC
CTTTTTCAAGCAGCCGGGTTGAATCACTTGAAAGAAACAAGCCCTTTACC
CATTATGACGACCATGATATCATTATTCAACACTCTTTTATTTGGTGTAG
GAACAATCATTGGTTCAAGCCTCAGTGGAGTAGTCTATGAACGGTACGGT
GGTCGGGTCATGTATAAAGGCACAGGTCTTCTGGCACTAGCATGGTTTTG
TGTTTCAGTCATATACGTTGCGCTTATAAGgaaacagaaaaaactaatgg
cGGAAGATGAACACCATGAAATGTAAAACTTGGTAAATAACAGTAACGGT
TATACCTATTTTATATTGTAGTGGTATTGTTCATGATATATTTAGTTAAA
ACATGAATGGTTTAAACAAAAAACCATATCGACGTGTATAGATGTGTACA
GCATTCGTTGCAAAAAGACTTTTGGTTTTTTATTTAAGTAATAGTAACTG
GTAAACCCTTAGGATCCGTAGCATATATCGTTGGAAGTTTTGGCAAAATA
GTTGAACCGcaaaatgagtaaaaatttG Coding sequence (CDS) from alignment at scaffold_334:66028..68255+ >TCONS_00060094 ID=TCONS_00060094|Name=TCONS_00060094|organism=Clytia hemisphaerica|type=CDS|length=3204bp|location=Sequence derived from alignment at scaffold_334:66028..68255+ (Clytia hemisphaerica)
ATGACAACTGAGCAAACCGAGGAAGTCCATCTAAATAATGACAATGATAA
TGacaatgatgaaaaagaaagaagatcGCAATATCAATATCGCTGGTACA
ATATTAATCCGAAAGCCTTTCCTGCAAAATGTTCGTATTTCTTTGAGAAA
GCTCGTGTTGTTGGTTTCTCGCCGAACTTGGTAATGTTTTTGACCAGTAT
TGGGTTGAACAAAGCTGAAGCTGGATTCATTGGCGGTTTGAAGATGGTTG
GTATGTTATCAGGGGGTATCTTTTGGGGATACATAGCTGATAAATGGCAT
TGTCATCGGACAATTGTCTTGTGCACATGCGTCATGTCATTAATGAGCAT
CTTGACTCAACCTCTAATTGGTCTTCACTATGGTAACGCAGAAACAAACA
AATGCCCTACCAGCGTTAGTATGGGAAATACCAATGCAAGTGTGTCGATA
CTTAAAGATTGTGTCGGTGATGAAAATTGCACCTTTGCCAATACAACCGA
ACGTCCGATTCTGCCAAGATTTGCAAACAACGCAACCAAAAAATCACCGG
ATACTAAGTTAGATTCCAGATTCAACAGCTTTTTTGTGGCAATGCTTTTG
ATCAATATTGCAATTGCATTTGCCGAGGCGAACAGTACATCTTTTATCGA
TACTGGTACATTACGTCAAAGTCAATTATCGAAAGACAGACCTATTGTGT
TTGGACGGCAGCGAATGTTTGGTTCTTTCGGATCGGGTTTTGGGATATTG
GCTTCAAACATTGCTGTAGACTACTTTCCTGAATCCAACATTACCTGCTA
TACCGGTATCTTCGTTGTGTACGCCCTCTTTACCTGTTTGTGTTGTTTCT
TCACGCTACTCTTGTATCGAGGCCTTTCTTTCAGGAAAGATGCTAATGGT
GAAGACCCCGTGGATGCGGAAGACGCTCCATTACAAGAAACAGTTGGCAA
GAAACCAGAAGATGGTGAAACGAAAGGTTTTAATAAACTTCTCTTGAAGA
CAATATTACGCCACGATGTTTTATTTTTCTACGCAACAACGCTTATCAGC
GGTCTACAATATTCCCAAgtgctttcttttctttttccttatttGAAAGA
AATGGATGGCTCGTCTATTCATATGACGTTATCGATCGTGCTCCCCGCTA
TTTCTGCGAGTGTTGGATTTGCATTCTGTAAGGAAATTATTAACATTCTT
GGCGGCACTTGGAATTCCATTTTATTCTCTTTTGCCATGTATTTCTTGAG
ATACTTTACGATGGGTTTTATGGAGAGTGCGTGGCTGGTCGTTGCCGTTC
AAGTTCTACATTGTTTTTCAACTACCCTTTTTCAAGCAGCCGGGTTGAAT
CACTTGAAAGAAACAAGCCCTTTACCCATTATGACGACCATGATATCATT
ATTCAACACTCTTTTATTTGGTGTAGGAACAATCATTGGTTCAAGCCTCA
GTGGAGTAGTCTATGAACGGTACGGTGGTCGGGTCATGTATAAAGGCACA
GGTCTTCTGGCACTAGCATGGTTTTGTGTTTCAGTCATATACGTTGCGCT
TATAAGgaaacagaaaaaactaatggcGGAAGATGAACACCATGAAATGT
AAATGACAACTGAGCAAACCGAGGAAGTCCATCTAAATAATGACAATGAT
AATGacaatgatgaaaaagaaagaagatcGCAATATCAATATCGCTGGTA
CAATATTAATCCGAAAGCCTTTCCTGCAAAATGTTCGTATTTCTTTGAGA
AAGCTCGTGTTGTTGGTTTCTCGCCGAACTTGGTAATGTTTTTGACCAGT
ATTGGGTTGAACAAAGCTGAAGCTGGATTCATTGGCGGTTTGAAGATGGT
TGGTATGTTATCAGGGGGTATCTTTTGGGGATACATAGCTGATAAATGGC
ATTGTCATCGGACAATTGTCTTGTGCACATGCGTCATGTCATTAATGAGC
ATCTTGACTCAACCTCTAATTGGTCTTCACTATGGTAACGCAGAAACAAA
CAAATGCCCTACCAGCGTTAGTATGGGAAATACCAATGCAAGTGTGTCGA
TACTTAAAGATTGTGTCGGTGATGAAAATTGCACCTTTGCCAATACAACC
GAACGTCCGATTCTGCCAAGATTTGCAAACAACGCAACCAAAAAATCACC
GGATACTAAGTTAGATTCCAGATTCAACAGCTTTTTTGTGGCAATGCTTT
TGATCAATATTGCAATTGCATTTGCCGAGGCGAACAGTACATCTTTTATC
GATACTGGTACATTACGTCAAAGTCAATTATCGAAAGACAGACCTATTGT
GTTTGGACGGCAGCGAATGTTTGGTTCTTTCGGATCGGGTTTTGGGATAT
TGGCTTCAAACATTGCTGTAGACTACTTTCCTGAATCCAACATTACCTGC
TATACCGGTATCTTCGTTGTGTACGCCCTCTTTACCTGTTTGTGTTGTTT
CTTCACGCTACTCTTGTATCGAGGCCTTTCTTTCAGGAAAGATGCTAATG
GTGAAGACCCCGTGGATGCGGAAGACGCTCCATTACAAGAAACAGTTGGC
AAGAAACCAGAAGATGGTGAAACGAAAGGTTTTAATAAACTTCTCTTGAA
GACAATATTACGCCACGATGTTTTATTTTTCTACGCAACAACGCTTATCA
GCGGTCTACAATATTCCCAAgtgctttcttttctttttccttatttGAAA
GAAATGGATGGCTCGTCTATTCATATGACGTTATCGATCGTGCTCCCCGC
TATTTCTGCGAGTGTTGGATTTGCATTCTGTAAGGAAATTATTAACATTC
TTGGCGGCACTTGGAATTCCATTTTATTCTCTTTTGCCATGTATTTCTTG
AGATACTTTACGATGGGTTTTATGGAGAGTGCGTGGCTGGTCGTTGCCGT
TCAAGTTCTACATTGTTTTTCAACTACCCTTTTTCAAGCAGCCGGGTTGA
ATCACTTGAAAGAAACAAGCCCTTTACCCATTATGACGACCATGATATCA
TTATTCAACACTCTTTTATTTGGTGTAGGAACAATCATTGGTTCAAGCCT
CAGTGGAGTAGTCTATGAACGGTACGGTGGTCGGGTCATGTATAAAGGCA
CAGGTCTTCTGGCACTAGCATGGTTTTGTGTTTCAGTCATATACGTTGCG
CTTATAAGgaaacagaaaaaactaatggcGGAAGATGAACACCATGAAAT
GTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060094-exon-scaffold_334-1491911889:66028..66371 | TCONS_00060094-exon-scaffold_334-1491911889:66028..66371 | Clytia hemisphaerica | exon |
| TCONS_00060094-exon-scaffold_334-1510915933:66028..66371 | TCONS_00060094-exon-scaffold_334-1510915933:66028..66371 | Clytia hemisphaerica | exon |
| TCONS_00060094-exon-scaffold_334-1575043694:66028..66371 | TCONS_00060094-exon-scaffold_334-1575043694:66028..66371 | Clytia hemisphaerica | exon |
| TCONS_00060094-exon-scaffold_334-1491911889:66644..68255 | TCONS_00060094-exon-scaffold_334-1491911889:66644..68255 | Clytia hemisphaerica | exon |
| TCONS_00060094-exon-scaffold_334-1510915933:66644..68255 | TCONS_00060094-exon-scaffold_334-1510915933:66644..68255 | Clytia hemisphaerica | exon |
| TCONS_00060094-exon-scaffold_334-1575043694:66644..68255 | TCONS_00060094-exon-scaffold_334-1575043694:66644..68255 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_334 | supercontig | scaffold_334:66028..68255 + |
Annotated Terms
The following terms have been associated with this transcript:
Blast
The following BLAST results are available for this feature:
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