|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060093 ID=TCONS_00060093|Name=TCONS_00060093|organism=Clytia hemisphaerica|type=transcript|length=1078bpRun BLAST on NCBI protein sequence of TCONS_00060093-protein >TCONS_00060093-protein ID=TCONS_00060093-protein|Name=TCONS_00060093-protein|organism=Clytia hemisphaerica|type=polypeptide|length=342bp MSDVSEHDSDSDTEILKKEEKANKQQLKTHVISSGPQIVNAPQVYTRPSVRun BLAST on NCBI transcript from alignment at scaffold_334:24408..40347+ Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060093 ID=TCONS_00060093|Name=TCONS_00060093|organism=Clytia hemisphaerica|type=transcript|length=15940bp|location=Sequence derived from alignment at scaffold_334:24408..40347+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_334:24408..40347+ >TCONS_00060093 ID=TCONS_00060093|Name=TCONS_00060093|organism=Clytia hemisphaerica|type=CDS|length=9234bp|location=Sequence derived from alignment at scaffold_334:24408..40347+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00060093 vs. Swiss-Prot (Human)
Match: HTSF1 (HIV Tat-specific factor 1 OS=Homo sapiens GN=HTATSF1 PE=1 SV=1) HSP 1 Score: 144.436 bits (363), Expect = 1.130e-37 Identity = 110/244 (45.08%), Postives = 144/244 (59.02%), Query Frame = 2
Query: 380 PNDGTVYEWDETKRGWIPKIDEDFIAMYQANYGFTATGEHDPNVNAE-----TDEKPGAGDEKNXXXXXXXXXXXXXXXXXNNSEIGKKRKAAEQKKEWFDIDPKKNNNVYVSGLPXXXXXXXXXXLMSKCGIIMDDDSGKK-KLKLYKTPDGKVKGDGRCCYLKHESVVLACQLLDEGDFKGSKIKVELAVFELXXXXXXXXXXXXXXXXXXXXXXXXXLLDWVDRPKKRS-----KFDRIVI 1078
P D T YEWD K+ W PKI EDFIA YQANYGF+ G N E T E+P + P ++ + G+KRKA + WF ++ +N NVYVSGLP + +EF +LMSK GIIM D ++ K+KLYK G +KGDG CCYLK ESV LA +LLDE + +G K+ VE+A F+LKG++D +KK KK K KK Q K LDW RP++R+ + +R+VI
Sbjct: 45 PTD-TPYEWDLDKKAWFPKITEDFIATYQANYGFSNDGASSSTANVEDVHARTAEEP---------------PQEKAPEPTDARKKGEKRKA---ESGWFHVEEDRNTNVYVSGLPPDITVDEFIQLMSKFGIIMRDPQTEEFKVKLYKDNQGNLKGDGLCCYLKRESVELALKLLDEDEIRGYKLHVEVAKFQLKGEYDASKKKKKCKDYKKKLSMQQKQLDW--RPERRAGPSRMRHERVVI 267 The following BLAST results are available for this feature:
BLAST of TCONS_00060093 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.