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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060091 ID=TCONS_00060091|Name=TCONS_00060091|organism=Clytia hemisphaerica|type=transcript|length=2456bp
ctgttttccccaataaagttcaatctgtttccaaaatgcaatatcatcat
tttttttgtttcccaattatattatgtcatctcctagatGGGAACACCAG
AGATGACTTCTGATAGTGTTTAATCAACAGAGACCTGTTAGGAAAGATTT
GATCCAAGCAAGTAATTTGCCTTTGATgccattaattttaattttgttta
gTAGAATTGTatggcagtgtagacctaaagctctaaaacagcatctaata
acatgaaaaccagaatatgattcttcaatgggaatcaaaactacaAAGTG
CAcctacaaacatcaatttgtcagatctaacaaaactaataaccgcactg
tcatcattgacaataaaacaaacgattttctgtcaagagccttgtaaaca
ttccaacaacttccatcgaaatgatctatcacagctcagtctaccatttt
tagcgcggtccgaggattgagccgagaccgctccgcgaactcctgcgcgg
gtgaaaaacttcaatctgtcaatcattttcttgaGCGAAGagtacgatag
tgccgcggatcatcaatggatagtattcaattatcattatccctttattt
tcattcctagaacttttgcaaaaaaaaggaaaaatagaaaagttgtattt
tttactgctctattcacatactgaatttgaactgatttgaaagatcttct
atgtggcgtttttttgcaaacttcaaaaaactgatttttgtcccgccttt
gcaggactttggctcaagtgcttgagtgcagcatagggtacaaagtccaa
acatgcgtttcccgtaatttttgtgtgaagagttaggtctatactgtatG
GTCGACTCTGTTGAAAGCCTTTTTAAGTCAAGGTAGATCACGTCCACATT
GTTGCCGTTTTCTATATGGTTCATGGATACTGATGGATAAGTTGTTCGGT
GTGAGAGAGTAGTTGGCTCAGGCAGGATCTTCTAGATCTGAATCCAGGTT
GTTTGCTATTAAAAAGATTGGTTTTCTGGTAAATCTTGATTGCCTTTTTT
GAAGATGTGGGATGTAGCTTAATTTCAGTAGATGGGGGGTTTGACTTTTG
TCTAGAATGTTTCTCCAGATAAGACAAGGAGGAGTTGCAAGTTGTTATCT
GGCTTTTTTTGAGCAGAATGGCAGGGAAATCATCAGGTCCAGGGGCAGAG
TTTGAAGATAAGGTGTTGATTTCGTTGATAAAATCAGCTTCTGTGAGGAG
AAGTGATgttatcattttcttttttttaaagtcataTCTCTCCAATGGTT
GAGTAAAGACAGAACTGTATTGGTTCTGAAGTATGTTAGCCGTACGTTTA
CTATCAGTTGTAAATTAATTTGTTGACTGATCTATTATTAAGGGTCCAAC
CTTTGGTTTATGCTTTGAAAACTTCTTTGCATAGTGCATAGAAATATTTA
GGAttagatttaatttttgaagtattttgaaGTTCTTGCTTTTGTCTTTC
ATTCAAGTGTGACTGTTGAAGCTTGAGTTCAATATCGATAAGTTTCTGTG
TGGTTTTGTTTGTTTGATGCCTAATTTTGCTCTATTACGCATTAAAACAC
GTCTGTCTCTTGggattattttataagaatttttggttttcaaaGCTGGT
ACTTTGTTTGCTGAAATAACTGATATACACTTGTCAATTAAAAGTTTCGT
ATAGTTCCTCTGGGTCTGAGGTTGAATGCAAATTTCATGCCAGTAAATTG
TAAATAATAGAATACaatagttgtttgggagaacGGGACGGTCTGTTGAA
TAACTTATTACTTCACACTTCATTGGATGCAATTACAACAAACAGGAAAT
TAGATATTACCTACaaataaattttgttgaaattgacaCGCTAACATTCT
CTCGAATTAGCACGCAAAAAGGTTAGAGGGACGTCCAATAAAATATAAGC
TCGAATATTAGGGTTTTATTTCTGTAATACAGAGCCAGGCAGAGCAGATA
ATTCCTGtctaaagcaagaaaaagtgaagccttaaaagtTCACACTATAT
TTAGCAATTTTGTTTGCATTTGACAAATATGCGGTCCTTGTTTTGTTACT
GCAGCAGGTTTGAGCTTTGACCTCCCTACTTGTacgggcaccggtagggt
tcaATGCTTTTTTACTTAAGGTCTGTAAATTTCatgctataagtatttgt
gagtGGCATTAAAGGATACCTTTTTCACCGGTACAAATCACCGGTACAAG
CAAATTTCAGAAATATACATTGAAAACAGTCAGAAACATAGAAGGTAGGA
GAGTAGGGANCCTTTTTCACCGGTACAAATCACCGGTACAAGCAAATTTC
AGAAATATACATTGAAAACAGTCAGAAACATAGAAGGTAGGagagtaggg
aaaaaataagttAATATGCATCCTGGAGGatgtagtagggggaattttgt
tcgatt Run BLAST on NCBI protein sequence of TCONS_00060091-protein >TCONS_00060091-protein ID=TCONS_00060091-protein|Name=TCONS_00060091-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
MITSLLLTEADFINEINTLSSNSAPGPDDFPAILLKKSQITTCNSSLSYL
EKHSRQKSNPPSTEIKLHPTSSKKAIKIYQKTNLFNSKQPGFRSRRSCLS
QLLSHTEQLIHQYP Run BLAST on NCBI transcript from alignment at scaffold_333:432760..435215 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060091 ID=TCONS_00060091|Name=TCONS_00060091|organism=Clytia hemisphaerica|type=transcript|length=2456bp|location=Sequence derived from alignment at scaffold_333:432760..435215 (Clytia hemisphaerica)
aatcgaacaaaattccccctactacatCCTCCAGGATGCATATTaactta
ttttttccctactctCCTACCTTCTATGTTTCTGACTGTTTTCAATGTAT
ATTTCTGAAATTTGCTTGTACCGGTGATTTGTACCGGTGAAAAAGGNTCC
CTACTCTCCTACCTTCTATGTTTCTGACTGTTTTCAATGTATATTTCTGA
AATTTGCTTGTACCGGTGATTTGTACCGGTGAAAAAGGTATCCTTTAATG
CCactcacaaatacttatagcatGAAATTTACAGACCTTAAGTAAAAAAG
CATtgaaccctaccggtgcccgtACAAGTAGGGAGGTCAAAGCTCAAACC
TGCTGCAGTAACAAAACAAGGACCGCATATTTGTCAAATGCAAACAAAAT
TGCTAAATATAGTGTGAacttttaaggcttcactttttcttgctttagaC
AGGAATTATCTGCTCTGCCTGGCTCTGTATTACAGAAATAAAACCCTAAT
ATTCGAGCTTATATTTTATTGGACGTCCCTCTAACCTTTTTGCGTGCTAA
TTCGAGAGAATGTTAGCGtgtcaatttcaacaaaatttatttGTAGGTAA
TATCTAATTTCCTGTTTGTTGTAATTGCATCCAATGAAGTGTGAAGTAAT
AAGTTATTCAACAGACCGTCCCgttctcccaaacaactattGTATTCTAT
TATTTACAATTTACTGGCATGAAATTTGCATTCAACCTCAGACCCAGAGG
AACTATACGAAACTTTTAATTGACAAGTGTATATCAGTTATTTCAGCAAA
CAAAGTACCAGCtttgaaaaccaaaaattcttataaaataatccCAAGAG
ACAGACGTGTTTTAATGCGTAATAGAGCAAAATTAGGCATCAAACAAACA
AAACCACACAGAAACTTATCGATATTGAACTCAAGCTTCAACAGTCACAC
TTGAATGAAAGACAAAAGCAAGAACttcaaaatacttcaaaaattaaatc
taaTCCTAAATATTTCTATGCACTATGCAAAGAAGTTTTCAAAGCATAAA
CCAAAGGTTGGACCCTTAATAATAGATCAGTCAACAAATTAATTTACAAC
TGATAGTAAACGTACGGCTAACATACTTCAGAACCAATACAGTTCTGTCT
TTACTCAACCATTGGAGAGAtatgactttaaaaaaaagaaaatgataacA
TCACTTCTCCTCACAGAAGCTGATTTTATCAACGAAATCAACACCTTATC
TTCAAACTCTGCCCCTGGACCTGATGATTTCCCTGCCATTCTGCTCAAAA
AAAGCCAGATAACAACTTGCAACTCCTCCTTGTCTTATCTGGAGAAACAT
TCTAGACAAAAGTCAAACCCCCCATCTACTGAAATTAAGCTACATCCCAC
ATCTTCAAAAAAGGCAATCAAGATTTACCAGAAAACCAATCTTTTTAATA
GCAAACAACCTGGATTCAGATCTAGAAGATCCTGCCTGAGCCAACTACTC
TCTCACACCGAACAACTTATCCATCAGTATCCATGAACCATATAGAAAAC
GGCAACAATGTGGACGTGATCTACCTTGACTTAAAAAGGCTTTCAACAGA
GTCGACCatacagtatagacctaactcttcacacaaaaattacgggaaac
gcatgtttggactttgtaccctatgctgcactcaagcacttgagccaaag
tcctgcaaaggcgggacaaaaatcagttttttgaagtttgcaaaaaaacg
ccacatagaagatctttcaaatcagttcaaattcagtatgtgaatagagc
agtaaaaaatacaacttttctatttttccttttttttgcaaaagttctag
gaatgaaaataaagggataatgataattgaatactatccattgatgatcc
gcggcactatcgtactCTTCGCtcaagaaaatgattgacagattgaagtt
tttcacccgcgcaggagttcgcggagcggtctcggctcaatcctcggacc
gcgctaaaaatggtagactgagctgtgatagatcatttcgatggaagttg
ttggaatgtttacaaggctcttgacagaaaatcgtttgttttattgtcaa
tgatgacagtgcggttattagttttgttagatctgacaaattgatgtttg
taggTGCACTTtgtagttttgattcccattgaagaatcatattctggttt
tcatgttattagatgctgttttagagctttaggtctacactgccatACAA
TTCTActaaacaaaattaaaattaatggcATCAAAGGCAAATTACTTGCT
TGGATCAAATCTTTCCTAACAGGTCTCTGTTGATTAAACACTATCAGAAG
TCATCTCTGGTGTTCCCatctaggagatgacataatataattgggaaaca
aaaaaaatgatgatattgcattttggaaacagattgaactttattgggga
aaacag Coding sequence (CDS) from alignment at scaffold_333:432760..435215 >TCONS_00060091 ID=TCONS_00060091|Name=TCONS_00060091|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at scaffold_333:432760..435215 (Clytia hemisphaerica)
atgataacATCACTTCTCCTCACAGAAGCTGATTTTATCAACGAAATCAA
CACCTTATCTTCAAACTCTGCCCCTGGACCTGATGATTTCCCTGCCATTC
TGCTCAAAAAAAGCCAGATAACAACTTGCAACTCCTCCTTGTCTTATCTG
GAGAAACATTCTAGACAAAAGTCAAACCCCCCATCTACTGAAATTAAGCT
ACATCCCACATCTTCAAAAAAGGCAATCAAGATTTACCAGAAAACCAATC
TTTTTAATAGCAAACAACCTGGATTCAGATCTAGAAGATCCTGCCTGAGC
CAACTACTCTCTCACACCGAACAACTTATCCATCAGTATCCATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060091-exon-scaffold_333-1491911889:432760..435215 | TCONS_00060091-exon-scaffold_333-1491911889:432760..435215 | Clytia hemisphaerica | exon |
| TCONS_00060091-exon-scaffold_333-1510915933:432760..435215 | TCONS_00060091-exon-scaffold_333-1510915933:432760..435215 | Clytia hemisphaerica | exon |
| TCONS_00060091-exon-scaffold_333-1575043694:432760..435215 | TCONS_00060091-exon-scaffold_333-1575043694:432760..435215 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_333 | supercontig | scaffold_333:432760..435215 . |
Blast
The following BLAST results are available for this feature:
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