TCONS_00060087 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060087
Unique NameTCONS_00060087
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length442

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060087 ID=TCONS_00060087|Name=TCONS_00060087|organism=Clytia hemisphaerica|type=transcript|length=442bp
NNTGAAGCGAGCTAATGGAGCTCTAAGTAAACTtcggcattatgtcgaca
agAAAACACTAGCATCATTatatttttcccttttccaATGTCACGCCTCC
TATGCAGCCCAGATTTGGGAGCAACGCCAAACAATCCACGCCCGTCGAGT
TCTTATTCTTCCAAAACAATCTCTTAGAATCATGTCTTTCTCTGACTTTC
GTGCATATACTTTTCCtctgtttttagaatttaaacttcttcaatttttt
gactttgtcaaATACCTTAATATCCtctttcttttcaaacttttgaatcg
aaaattacctctttctcttttacaaactcttgAATACAAACGTCTTAATG
ATGCTGACCGTCATGAAGTAATTCGTTGTAAGTCTGGACTTCTAAAAATA
CCCGAAGTAAAAACAGTGACTTATGGTAACTATTCAATTCTA
Run BLAST on NCBI

transcript from alignment at scaffold_333:399090..399531

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060087 ID=TCONS_00060087|Name=TCONS_00060087|organism=Clytia hemisphaerica|type=transcript|length=442bp|location=Sequence derived from alignment at scaffold_333:399090..399531 (Clytia hemisphaerica)
TAGAATTGAATAGTTACCATAAGTCACTGTTTTTACTTCGGGTATTTTTA
GAAGTCCAGACTTACAACGAATTACTTCATGACGGTCAGCATCATTAAGA
CGTTTGTATTcaagagtttgtaaaagagaaagaggtaattttcgattcaa
aagtttgaaaagaaagaGGATATTAAGGTATttgacaaagtcaaaaaatt
gaagaagtttaaattctaaaaacagaGGAAAAGTATATGCACGAAAGTCA
GAGAAAGACATGATTCTAAGAGATTGTTTTGGAAGAATAAGAACTCGACG
GGCGTGGATTGTTTGGCGTTGCTCCCAAATCTGGGCTGCATAGGAGGCGT
GACATtggaaaagggaaaaatatAATGATGCTAGTGTTTTcttgtcgaca
taatgccgaAGTTTACTTAGAGCTCCATTAGCTCGCTTCANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037802XLOC_037802Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060087-exon-scaffold_333-1491911889:399090..399531TCONS_00060087-exon-scaffold_333-1491911889:399090..399531Clytia hemisphaericaexon
TCONS_00060087-exon-scaffold_333-1510915933:399090..399531TCONS_00060087-exon-scaffold_333-1510915933:399090..399531Clytia hemisphaericaexon
TCONS_00060087-exon-scaffold_333-1575043694:399090..399531TCONS_00060087-exon-scaffold_333-1575043694:399090..399531Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_333supercontigscaffold_333:399090..399531 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.03011	0.749246	0.484624	0.628913	0.260996	0.162261	0	0	0.321504	0.821476	0.487381	0	0.113202	0.25669	0.655231	0.457926	0.114305	0.468635	1.51063	1.17792	0.544862	1.62088	1.16461	0.454728	0.16348	0.327402	0.733324	0	1.12281	0.824652
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060087 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top