TCONS_00060081 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060081
Unique NameTCONS_00060081
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length234

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060081 ID=TCONS_00060081|Name=TCONS_00060081|organism=Clytia hemisphaerica|type=transcript|length=234bp
CTTTGTAAGTGCATAATGGTAGACCAAGCAGCGATAAATTTTTGAACATG
CTTTCGCTCAAAGAGAGGTCACAGTCAAAATCCCAGTCAAATACACGAAC
AGACGAATCATAGACGATAGATCCATATGTTTAAAGACATAGTTTTGACT
AGTCGACTAGACGATAACTTTTCATCCTGAGGCTGCTGGAATCAATACCA
AAGACAattcaatttgattttattgCACAACAAT
Run BLAST on NCBI

transcript from alignment at scaffold_333:292744..292977

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060081 ID=TCONS_00060081|Name=TCONS_00060081|organism=Clytia hemisphaerica|type=transcript|length=234bp|location=Sequence derived from alignment at scaffold_333:292744..292977 (Clytia hemisphaerica)
ATTGTTGTGcaataaaatcaaattgaatTGTCTTTGGTATTGATTCCAGC
AGCCTCAGGATGAAAAGTTATCGTCTAGTCGACTAGTCAAAACTATGTCT
TTAAACATATGGATCTATCGTCTATGATTCGTCTGTTCGTGTATTTGACT
GGGATTTTGACTGTGACCTCTCTTTGAGCGAAAGCATGTTCAAAAATTTA
TCGCTGCTTGGTCTACCATTATGCACTTACAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037796XLOC_037796Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060081-exon-scaffold_333-1491911889:292744..292977TCONS_00060081-exon-scaffold_333-1491911889:292744..292977Clytia hemisphaericaexon
TCONS_00060081-exon-scaffold_333-1510915933:292744..292977TCONS_00060081-exon-scaffold_333-1510915933:292744..292977Clytia hemisphaericaexon
TCONS_00060081-exon-scaffold_333-1575043694:292744..292977TCONS_00060081-exon-scaffold_333-1575043694:292744..292977Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_333supercontigscaffold_333:292744..292977 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.98125	0.966015	0	1.09735	33.3978	26.3914	17.8305	20.2697	7.51302	4.13604	2.00727	4.61825	9.22367	8.21046	2.25004	1.81098	14.1295	6.86003	2.10611	3.30584	1.91558	2.80307	4.54332	0	23.399	21.8323	0	1.44966	0	3.3607
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060081 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top