TCONS_00060078 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060078
Unique NameTCONS_00060078
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length344

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060078 ID=TCONS_00060078|Name=TCONS_00060078|organism=Clytia hemisphaerica|type=transcript|length=344bp
ACCGAACAATAGCATGCATTGGCATTATTTTAAACGGCACATTAAATTCT
TTGTCACGAAGACATttcaaatttgcccaaattgcGCACGTCATTTTTCT
GATAGAATGCCATCTATTATATCGATAAAAATCGAATATTTTTGCCAACG
TTGGCGTTCCGGTAGTGCATTGATACCATAATGGGCTGTAATGATCAAAG
TATGAGATGGACAACGTTGgagcattttctttttcattattaTCATAAAA
TTTGGCTGGTGGAATATGATCGGAATCGATACCCAAATAAGCTGATTTTC
CTTTTGGACGGTTAATATGCAATTGTGCACAATTTGTAAACCCA
Run BLAST on NCBI

protein sequence of TCONS_00060078-protein

>TCONS_00060078-protein ID=TCONS_00060078-protein|Name=TCONS_00060078-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
GFTNCAQLHINRPKGKSAYLGIDSDHIPPAKFYDNNEKENAPTLSISYFD
HYSPLWYQCTTGTPTLAKIFDFYRYNRWHSIRKMTCAIWANLKCLRDKEF
NVPFKIMPMHAIVR
Run BLAST on NCBI

transcript from alignment at scaffold_333:218034..218377

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060078 ID=TCONS_00060078|Name=TCONS_00060078|organism=Clytia hemisphaerica|type=transcript|length=344bp|location=Sequence derived from alignment at scaffold_333:218034..218377 (Clytia hemisphaerica)
TGGGTTTACAAATTGTGCACAATTGCATATTAACCGTCCAAAAGGAAAAT
CAGCTTATTTGGGTATCGATTCCGATCATATTCCACCAGCCAAATTTTAT
GAtaataatgaaaaagaaaatgctcCAACGTTGTCCATCTCATACTTTGA
TCATTACAGCCCATTATGGTATCAATGCACTACCGGAACGCCAACGTTGG
CAAAAATATTCGATTTTTATCGATATAATAGATGGCATTCTATCAGAAAA
ATGACGTGCgcaatttgggcaaatttgaaATGTCTTCGTGACAAAGAATT
TAATGTGCCGTTTAAAATAATGCCAATGCATGCTATTGTTCGGT

Coding sequence (CDS) from alignment at scaffold_333:218034..218377

>TCONS_00060078 ID=TCONS_00060078|Name=TCONS_00060078|organism=Clytia hemisphaerica|type=CDS|length=342bp|location=Sequence derived from alignment at scaffold_333:218034..218377 (Clytia hemisphaerica)
GGGTTTACAAATTGTGCACAATTGCATATTAACCGTCCAAAAGGAAAATC
AGCTTATTTGGGTATCGATTCCGATCATATTCCACCAGCCAAATTTTATG
AtaataatgaaaaagaaaatgctcCAACGTTGTCCATCTCATACTTTGAT
CATTACAGCCCATTATGGTATCAATGCACTACCGGAACGCCAACGTTGGC
AAAAATATTCGATTTTTATCGATATAATAGATGGCATTCTATCAGAAAAA
TGACGTGCgcaatttgggcaaatttgaaATGTCTTCGTGACAAAGAATTT
AATGTGCCGTTTAAAATAATGCCAATGCATGCTATTGTTCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037793XLOC_037793Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060078-proteinTCONS_00060078-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060078-exon-scaffold_333-1491911889:218034..218377TCONS_00060078-exon-scaffold_333-1491911889:218034..218377Clytia hemisphaericaexon
TCONS_00060078-exon-scaffold_333-1510915933:218034..218377TCONS_00060078-exon-scaffold_333-1510915933:218034..218377Clytia hemisphaericaexon
TCONS_00060078-exon-scaffold_333-1575043694:218034..218377TCONS_00060078-exon-scaffold_333-1575043694:218034..218377Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_333supercontigscaffold_333:218034..218377 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.262797	0.512537	0	0	0	0	0	0	0	0	0	0	0.87389	0.363018	7.16279	3.04268	1.38097	3.0331	5.30782	15.7858	2.54087	2.97444	2.10923	2.46548	3.668	4.53268	0.360347	2.692	0.583369	0.29718
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060078 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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