TCONS_00060077 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060077
Unique NameTCONS_00060077
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length464

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060077 ID=TCONS_00060077|Name=TCONS_00060077|organism=Clytia hemisphaerica|type=transcript|length=464bp
atttttttcattaatgATCTTTCGTGAGAAAACATTATGTTACTGTCTAT
AAACAAAGGAGTACTTCGTATTCAACCGGGACGCATATTTGTTGATTCGA
CATATCTTGATAACAAACATCGACCGTGTGATATTCTAGTGAACATTCTG
AAGCGTCTCGATTGGCATAGATAGAAACGAAATATTTTCGCGCGCATTCA
TCAAATTGATCCTCCCAGCATTGTTGGTATGCAATCGGCGAGAAAGTTAC
GAATGgattctttttacaaaaatcaccAGACGATTTTTTGCAATACTCTT
CGCCCTCAGCATTTGGATAATACTGTACAGCAAGTGTTGTGTTGGCCAAA
AAAGACACGATACTGAATATCGCAACGATAAAATTAACTGATAAAGACAT
CTGTTGTTTTTGCTTGTCTTCTTGTAAGAAAAACCCAAAAGAATGAAGTA
TTATGATGTCTTTG
Run BLAST on NCBI

protein sequence of TCONS_00060077-protein

>TCONS_00060077-protein ID=TCONS_00060077-protein|Name=TCONS_00060077-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
KDIIILHSFGFFLQEDKQKQQMSLSVNFIVAIFSIVSFLANTTLAVQYYP
NAEGEEYCKKSSGDFCKKNPFVTFSPIAYQQCWEDQFDECARKYFVSIYA
NRDASECSLEYHTVDVCYQDMSNQQICVPVEYEVLLCL
Run BLAST on NCBI

transcript from alignment at scaffold_333:215156..215619

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060077 ID=TCONS_00060077|Name=TCONS_00060077|organism=Clytia hemisphaerica|type=transcript|length=464bp|location=Sequence derived from alignment at scaffold_333:215156..215619 (Clytia hemisphaerica)
CAAAGACATCATAATACTTCATTCTTTTGGGTTTTTCTTACAAGAAGACA
AGCAAAAACAACAGATGTCTTTATCAGTTAATTTTATCGTTGCGATATTC
AGTATCGTGTCTTTTTTGGCCAACACAACACTTGCTGTACAGTATTATCC
AAATGCTGAGGGCGAAGAGTATTGCAAAAAATCGTCTggtgatttttgta
aaaagaatcCATTCGTAACTTTCTCGCCGATTGCATACCAACAATGCTGG
GAGGATCAATTTGATGAATGCGCGCGAAAATATTTCGTTTCTATCTATGC
CAATCGAGACGCTTCAGAATGTTCACTAGAATATCACACGGTCGATGTTT
GTTATCAAGATATGTCGAATCAACAAATATGCGTCCCGGTTGAATACGAA
GTACTCCTTTGTTTATAGACAGTAACATAATGTTTTCTCACGAAAGATca
ttaatgaaaaaaat

Coding sequence (CDS) from alignment at scaffold_333:215156..215619

>TCONS_00060077 ID=TCONS_00060077|Name=TCONS_00060077|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at scaffold_333:215156..215619 (Clytia hemisphaerica)
AAAGACATCATAATACTTCATTCTTTTGGGTTTTTCTTACAAGAAGACAA
GCAAAAACAACAGATGTCTTTATCAGTTAATTTTATCGTTGCGATATTCA
GTATCGTGTCTTTTTTGGCCAACACAACACTTGCTGTACAGTATTATCCA
AATGCTGAGGGCGAAGAGTATTGCAAAAAATCGTCTggtgatttttgtaa
aaagaatcCATTCGTAACTTTCTCGCCGATTGCATACCAACAATGCTGGG
AGGATCAATTTGATGAATGCGCGCGAAAATATTTCGTTTCTATCTATGCC
AATCGAGACGCTTCAGAATGTTCACTAGAATATCACACGGTCGATGTTTG
TTATCAAGATATGTCGAATCAACAAATATGCGTCCCGGTTGAATACGAAG
TACTCCTTTGTTTATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037792XLOC_037792Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060077-proteinTCONS_00060077-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060077-exon-scaffold_333-1491911889:215156..215619TCONS_00060077-exon-scaffold_333-1491911889:215156..215619Clytia hemisphaericaexon
TCONS_00060077-exon-scaffold_333-1510915933:215156..215619TCONS_00060077-exon-scaffold_333-1510915933:215156..215619Clytia hemisphaericaexon
TCONS_00060077-exon-scaffold_333-1575043694:215156..215619TCONS_00060077-exon-scaffold_333-1575043694:215156..215619Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_333supercontigscaffold_333:215156..215619 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.22105	0.94517	0.924701	0	0	46.6855	43.0365	220.178	159.018	167.314	146.586	0.27759	0	0	0.0847809	0.208886	0	1.03528	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060077 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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