TCONS_00060073 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060073
Unique NameTCONS_00060073
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length852

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060073 ID=TCONS_00060073|Name=TCONS_00060073|organism=Clytia hemisphaerica|type=transcript|length=852bp
CCTTTattcagctggcacacaacgttgtttcaacgtttatctaacgttca
caacgtcctttcaacgttaggtgaacgttgaaacgacgttgtgtgccagc
tgggtattcATCTTTTGTTATGCTTGCCAAGGAGTCACGAGACTTTAATG
GAGAATGTTTTTCTTAAAGCTATACTTTGAGACACTATACGATCTCGAGT
ACAGTttactctctctctaattcgacgttctactattcgatactcAATTA
GTAGCTTTGACTGAAGTTCTTCTCATCTCGACCTCAAAAAACCAAATAAT
GAGAACTCTGGTTATCTTCGATATATCTTTCCTCTTCCCTCTTCTTTGAG
TTACCCTAATATGAGGTCCATCCCCAGTGGTTTGGTTATTGGCCTACTTG
GCGGGTGGCTTTAAGTATGAGTTTTTAAAGTGCGAGTTTCACTCACCGCG
TGAAATTGTTCATGAACCGTCAAAACTTAACTCGTTGTCAGAGATGACTC
GCAAAAGAAATCTAGAATTATTCAAAACCTCGAGATTGTCCACCAGTCAC
CAAACATTTCACACCAATTTTCCAAGAATATTAAAAAGCCGTCCAATATT
GGTGAAAAGCCTTCCAAAATTGTCGAAAAGCCATTAAAGATTGTCGAAAA
GCCTTCCAAGATTGTTGAAAGGCCGTCAAAGATTGTTGAAAAGCCGTCAA
AGATTGTTGGATAGCCgtcaaaaattgttgaaaagcCGTCCGATATTGTC
CAAAAGCCGTCCAAGATTGTCGAAAAGCGGACcaatattatgaaaaaaac
aaccgaGAGTGAGACATGATTGATAAGAGAATCTTTTTAGTGTGATGGCC
AG
Run BLAST on NCBI

transcript from alignment at scaffold_333:110358..111209

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060073 ID=TCONS_00060073|Name=TCONS_00060073|organism=Clytia hemisphaerica|type=transcript|length=852bp|location=Sequence derived from alignment at scaffold_333:110358..111209 (Clytia hemisphaerica)
CTGGCCATCACACTAAAAAGATTCTCTTATCAATCATGTCTCACTCtcgg
ttgtttttttcataatattgGTCCGCTTTTCGACAATCTTGGACGGCTTT
TGGACAATATCGGACGgcttttcaacaatttttgacGGCTATCCAACAAT
CTTTGACGGCTTTTCAACAATCTTTGACGGCCTTTCAACAATCTTGGAAG
GCTTTTCGACAATCTTTAATGGCTTTTCGACAATTTTGGAAGGCTTTTCA
CCAATATTGGACGGCTTTTTAATATTCTTGGAAAATTGGTGTGAAATGTT
TGGTGACTGGTGGACAATCTCGAGGTTTTGAATAATTCTAGATTTCTTTT
GCGAGTCATCTCTGACAACGAGTTAAGTTTTGACGGTTCATGAACAATTT
CACGCGGTGAGTGAAACTCGCACTTTAAAAACTCATACTTAAAGCCACCC
GCCAAGTAGGCCAATAACCAAACCACTGGGGATGGACCTCATATTAGGGT
AACTCAAAGAAGAGGGAAGAGGAAAGATATATCGAAGATAACCAGAGTTC
TCATTATTTGGTTTTTTGAGGTCGAGATGAGAAGAACTTCAGTCAAAGCT
ACTAATTgagtatcgaatagtagaacgtcgaattagagagagagtaaACT
GTACTCGAGATCGTATAGTGTCTCAAAGTATAGCTTTAAGAAAAACATTC
TCCATTAAAGTCTCGTGACTCCTTGGCAAGCATAACAAAAGATgaatacc
cagctggcacacaacgtcgtttcaacgttcacctaacgttgaaaggacgt
tgtgaacgttagataaacgttgaaacaacgttgtgtgccagctgaatAAA
GG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037788XLOC_037788Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060073-exon-scaffold_333-1491911889:110358..111209TCONS_00060073-exon-scaffold_333-1491911889:110358..111209Clytia hemisphaericaexon
TCONS_00060073-exon-scaffold_333-1510915933:110358..111209TCONS_00060073-exon-scaffold_333-1510915933:110358..111209Clytia hemisphaericaexon
TCONS_00060073-exon-scaffold_333-1575043694:110358..111209TCONS_00060073-exon-scaffold_333-1575043694:110358..111209Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_333supercontigscaffold_333:110358..111209 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.11193	0.0543119	0.126691	0.379268	0.0765701	0.0604764	0.588262	0.672798	0.330784	0.58158	0.168377	0.112246	0.0372228	0	0	0.0341512	0	0	0.0595704	0	0	0	0	0.058947	0	0.106384	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060073 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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