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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060064 ID=TCONS_00060064|Name=TCONS_00060064|organism=Clytia hemisphaerica|type=transcript|length=1143bp
tatACAGAAGCTTTATTTAGAAGCCTTATTATGCAACAGGTCAATGGAAt
agttttaagaatttttagTCATCGTCTTTTAAgtaatttgttttttatat
aaacaCAAGGAAATACAGTACTGTTTTGATCAAACTATTCATTTACTGCT
GTCAAATATCAAAGAGTTTTTGATAAAAGAGAGGAGAATTTAAGTTATGA
GAAACTAAGTTATGAGAAACTTATTTTGCTAGTCTAGTGATGTTATGAAA
AGAGTGTTTTCTCTTTAAGGATTTAGACATAGTTTGGACAAAAGTTTATC
CTGAGGTTTGAAAGAATTATCCtttttcacgtgattttattaaCACTGTT
TTCGTTTTCTATGAGAATatatgatttgattttttttttcaagaattgga
actttgtttatgattttgataaaagatattttttgaagttttgaaagttg
gacacaaaaatataaattatagaaaatttttaaagtttgtataAACTTCG
TAGTGTATGATTTGGTTTGACATACGTACAATCGCATACTGTAATCGTCT
CccttttcgttttttattttaggtGTTTTAACAGAATTAAAAGGAGGTAT
CATGGGATTGAACCGTGGATGAacaagtttcaatttttttttaaaacata
caaaTAAAGTCTATACAAGTGATTACAATCTGGAGTTAAAAGCAATGGCA
AAGAATTCATCCTCCTTGGAGCATCGGAATAAATTTGAaccgaattattt
ttatcaatttcgtTTGATATTGATTGGAGACAGTACTGTTGGGAAGTCAT
CATTATTAAGACAATTTACTGAAGGACAATTTATACAAGCTTCAGATCCA
ACAGTTGGTGTTGATTTTCATGTGCGAATCATTGAATTGAACGaTAAAGT
ACGTGTCAAACTGCAGCTTTGGGATACAGCTGGACAAGAACGTTTCCGGT
CTATAACCCGGTCATATTATCGGAATTGTGCTGGTTGTCTAGTTGTATAT
GATATCACAAATCGAGAATCGTTCGATCACGTGAAAGAATGGCTGGAAGA
AGCACGTTATGCTACGGAGGACCAAGATATAGTATATTGTTTAATCGGAC
ATAAAGTTGACTTAGACTATCGTAGGGAAGTCTCCACTTCAGA Run BLAST on NCBI transcript from alignment at scaffold_333:441436..443636- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00060064 ID=TCONS_00060064|Name=TCONS_00060064|organism=Clytia hemisphaerica|type=transcript|length=2201bp|location=Sequence derived from alignment at scaffold_333:441436..443636- (Clytia hemisphaerica)
TATACAGAAGCTTTATTTAGAAGCCTTATTATGCAACAGGTCAATGGAAT
AGTTTTAAGAATTTTTAGTCATCGTCTTTTAAGTAATTTGTTTTTTATAT
AAACACAAGGAAATACAGTACTGTTTTGATCAAACTATTCATTTACTGCT
GTCAAATATCAAAGAGTTTTTGATAAAAGAGAGGAGAATTTAAGTTATGA
GAAACTAAGTTATGAGAAACTTATTTTGCTAGTCTAGTGATGTTATGAAA
AGAGTGTTTTCTCTTTAAGGATTTAGACATAGTTTGGACAAAAGTTTATC
CTGAGGTTTGAAAGAATTATCCTTTTTCACGTGATTTTATTAACACTGTT
TTCGTTTTCTATGAGAATATATGATTTGATTTTTTTTTTCAAGAATTGGA
ACTTTGTTTATGATTTTGATAAAAGATATTTTTTGAAGTTTTGAAAGTTG
GACACAAAAATATAAATTATAGAAAATTTTTAAAGTTTGTATAAACTTCG
TAGTGTATGATTTGGTTTGACATACGTACAATCGCATACTGTAATCGTCT
CCCTTTTCGTTTTTTATTTTAGGTGTTTTAACAGAATTAAAAGGAGGTAT
CATGGGATTGAACCGTGGATGAACAAGTTTCAATTTTTTTTTAAAACATA
CAAATAAAGTCTATACAAGTGATTACAATCTGGAGTTAAAAGCAATGGCA
AAGAATTCATCCTCCTTGGAGCATCGGAATAAATTTGAACCGAATTATTT
TTATCAATTTCGTTTGATATTGATTGGAGACAGTACTGTTGGGAAGTCAT
CATTATTAAGACAATTTACTGAAGGACAATTTATACAAGCTTCAGATCCA
ACAGTTGGTGTTGATTTTCATGTGCGAATCATTGAATTGAACGGTAAATT
TATACATTATTATGTGTATTCTGTCGCGATGAAGAGGCCTCGTTTTTGTC
ACTATCAATTGCCTCTTTGCTTTCCATGTGCTGCTCTTTTTTCGAATACT
TCAAATGAACCCATTTACTCTTACTATCTTCCTTTGCTATTACTATCGTT
CGATAGTAAGACTTGAGTGCAGGGTAGAAGCAGTTGTCCGCAATCTCATT
GTTTGAGCTAGATGTTCCAAAAGCACGTGTTCTTTTGGCGACGAGTCATG
CACCTTCCGTAAAGGGGTATATACACATACCTAGGTCATAGCTTACTGCT
CAAGAAGGCTTCTCATGCGATTAGGTAGCTATGGAAATCACTCGATAACG
ACACAAGTGAATGTCCATACTTTTTTGACGTCATTATCTTATTAGAGAAT
ATCTATAGAATTACTTCGTTAAAAAGCTCTTAATAAACCTGATTGAATTA
ACGCTGATATGATTGACGAACAGCTCGCGTCATGGCTCAAGTCTTTACAA
CTTTGTCGAGAATACTTAAAATGCCAGGATTAAACCTTGATAAAGCTTGG
CTTTTAACACAACACCATTTTAATAACACGAAAACCCGCAACATACTCTA
TGTTTACTTTTTATATTTATTCGTTGAAAATCTTGTTTGTCTTAAACTAA
CAATAAGTCAAACCATTAAAGTATAAACTGTACGGAGCCATATCACGTCA
TGAACATACATAGACTGTATGTATGGGGCCCATTTTTCTATTTCCCTTAC
CTTTAAATGTGTCTCATGTTGAATATTTCCAAGAAGCCTCTGGCATGAAA
CAAATTCTTGGTCATTTTTTTCTTATATCACCGGTGTTCTGCATCTTCAA
ACTCCAACCTTATTAGGGCAGCATAAGGTGTTGACAAGACTTCCTACCTT
TAAAACTTAATAATTTGAAAGCTGACTTTGAAATAGAAGAATTTGTTGAG
AAATGACTTCTTTCTTTCACCTATTCCAATTTTTGTGACAAGCTAGCATG
TTATAATTTTGATACAGCATAAGCATTTTTGTGCTATTTATTTATTTACA
GATAAAGTACGTGTCAAACTGCAGCTTTGGGATACAGCTGGACAAGAACG
TTTCCGGTCTATAACCCGGTCATATTATCGGAATTGTGCTGGTTGTCTAG
TTGTATATGATATCACAAATCGAGAATCGTTCGATCACGTGAAAGAATGG
CTGGAAGAAGCACGTTATGCTACGGAGGACCAAGATATAGTATATTGTTT
AATCGGACATAAAGTTGACTTAGACTATCGTAGGGAAGTCTCCACTTCAG
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00060064-exon-scaffold_333-1575043694:442744..443636 | TCONS_00060064-exon-scaffold_333-1575043694:442744..443636 | Clytia hemisphaerica | exon |
| TCONS_00060064-exon-scaffold_333-1575043694:441436..441685 | TCONS_00060064-exon-scaffold_333-1575043694:441436..441685 | Clytia hemisphaerica | exon |
| TCONS_00060064-exon-scaffold_333-1510915933:442744..443636 | TCONS_00060064-exon-scaffold_333-1510915933:442744..443636 | Clytia hemisphaerica | exon |
| TCONS_00060064-exon-scaffold_333-1510915933:441436..441685 | TCONS_00060064-exon-scaffold_333-1510915933:441436..441685 | Clytia hemisphaerica | exon |
| TCONS_00060064-exon-scaffold_333-1491911889:442744..443636 | TCONS_00060064-exon-scaffold_333-1491911889:442744..443636 | Clytia hemisphaerica | exon |
| TCONS_00060064-exon-scaffold_333-1491911889:441436..441685 | TCONS_00060064-exon-scaffold_333-1491911889:441436..441685 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_333 | supercontig | scaffold_333:441436..443636 - |
Blast
BLAST of TCONS_00060064 vs. Swiss-Prot (Human)
Match: RB39B (Ras-related protein Rab-39B OS=Homo sapiens GN=RAB39B PE=1 SV=1) HSP 1 Score: 181.415 bits (459), Expect = 3.047e-54 Identity = 83/134 (61.94%), Postives = 105/134 (78.36%), Query Frame = 2
Query: 734 FEPNYFYQFRLILIGDSTVGKSSLLRQFTEGQFIQASDPTVGVDFHVRIIELNDKVRVKLQLWDTAGQERFRSITRSYYRNCAGCLVVYDITNRESFDHVKEWLEEARYATEDQDIVYCLIGHKVDLDYRREVS 1135
E + YQFRLI+IGDSTVGKS L+R+FTEG+F Q SDPTVGVDF R++E+ R+KLQ+WDTAGQERFRSITR+YYRN G L+++DITNR SF +V EWLEE + + IV+ L+GHK DLD +R+V+
Sbjct: 1 MEAIWLYQFRLIVIGDSTVGKSCLIRRFTEGRFAQVSDPTVGVDFFSRLVEIEPGKRIKLQIWDTAGQERFRSITRAYYRNSVGGLLLFDITNRRSFQNVHEWLEETKVHVQPYQIVFVLVGHKCDLDTQRQVT 134
The following BLAST results are available for this feature:
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