TCONS_00060061 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060061
Unique NameTCONS_00060061
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length876

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060061 ID=TCONS_00060061|Name=TCONS_00060061|organism=Clytia hemisphaerica|type=transcript|length=876bp
CAATCATAAAGTTTATTTGAAATGGCTAAGGAAATCTTACAATATGGTTT
CTTCATATGAAGATTGATGTCAGCGTCAATGATTAGCATCAAAGTTCAAG
TAAATGTTTTATTGGGGATGAATTCAGATCTTGACTGAGTAAATTCTATT
TTGCCCAAAAtgatttttcattcaaacacaGATCACAATTTGTTAGTATC
CACAGGTCAAAACCTAAACCAATAGGGCAAAACATTTTAACAGAAATCTT
TTTAACAgaaatactttatttttagaataatttcaatcaataaaaagaat
tcaatcaaaaaataatttatgataaGCATCTGATATGGCACTCAGTCGAA
GTGAAGAAAATTGGTCAGTCTTGATAAATGAGTTCAACATTTGTAAACAG
AAGCTACAAAGCAAACGAGAAAGCTTGAAAATCATGATGAAAGAATTGGA
TCAAGCACAAATTGAAAAAGATGTCTACAAAAACAAAGCTCGCCAGCTaC
AACGTGATTTTGAAGAGTTGAAGACAGCAGTTGGTGAAAGTTGGAATAAC
AACGAACATGCActgaaatttggtgaaaatgaaaagaaagtcaACACTTT
GACCAATTTATTACAATATTCAAAAGACGAGAACGGGAGGTTGAAAACAG
ATCTGGAGAATATTCGCCAATTGTATAACGATTCCCAGAAAGACAACATT
TTGCTAAGAAACAGTCTCACAAGACAAGAAGAGACGAAGAAAGTCAATGA
AAATGGAGTCAACGATAAAGAGAAACTAATTATACAACTGGAAGAATCTT
TGGCAAAGCTGCATGATTTGGAAGATGAAGTAGAAGTATTACGAGAAGAA
AACAAACAGATTGAGGACGAGGTAAC
Run BLAST on NCBI

protein sequence of TCONS_00060061-protein

>TCONS_00060061-protein ID=TCONS_00060061-protein|Name=TCONS_00060061-protein|organism=Clytia hemisphaerica|type=polypeptide|length=180bp
MALSRSEENWSVLINEFNICKQKLQSKRESLKIMMKELDQAQIEKDVYKN
KARQLQRDFEELKTAVGESWNNNEHALKFGENEKKVNTLTNLLQYSKDEN
GRLKTDLENIRQLYNDSQKDNILLRNSLTRQEETKKVNENGVNDKEKLII
QLEESLAKLHDLEDEVEVLREENKQIEDEV
Run BLAST on NCBI

transcript from alignment at scaffold_333:427254..431878-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060061 ID=TCONS_00060061|Name=TCONS_00060061|organism=Clytia hemisphaerica|type=transcript|length=4625bp|location=Sequence derived from alignment at scaffold_333:427254..431878- (Clytia hemisphaerica)
CAATCATAAAGTTTATTTGAAATGGCTAAGGAAATCTTACAATATGGTTT
CTTCATATGAAGATTGATGTCAGCGTCAATGATTAGCATCAAAGTTCAAG
TAAATGTTTTATTGGGGATGAATTCAGATCTTGACTGAGTAAATTCTATT
TTGCCCAAAATGATTTTTCATTCAAACACAGATCACAATTTGTTAGTATC
CACAGGTCAAAACCTAAACCAATAGGGCAAAACATTTTAACAGAAATCTT
TTTAACAGAAATACTTTATTTTTAGAATAATTTCAATCAATAAAAAGAAT
TCAATCAAAAAATAATTTATGATAAGCATCTGATATGGCACTCAGTCGAA
GTGAAGAAAATTGGTCAGTCTTGATAAATGAGGTATGTTCTGTTTCTTAT
CTTTATTGAGTCTCAACTCAGTAGTCCTCAATTTACAAGTGGGTCACACA
TTTTGTTAAGAACAACACATTTTTTAAAATACTAATCAAATACTTAACCC
TGTAATTGTTGATGTCGGCATATGCTGACATCTGGCAAATAGGTCACACC
TTCATTTTTTACGCACCGCAGTAGGGTTTATTGGGATTAATTTTTGCAGG
GATTAAATTTTGGGCTTGAGCTAGTCCACGAAATTTCGCGGGGACTTAAT
TTTGCAGATGACTCTATTGTGAGATAATTATTTTCACAATTTTGTGCCAT
TTTTTGCTATTTTACTGCTAAGCTCTGCATGCTGGTTGTAAAATACACAT
TCTTAGCGCATATTTAATGGCGGTAAACATGTTGAAAGTGGTCTTTTGAC
ATTTTTTGGAACTTAAAGCAAAAGAATTGCGTGGATTAGACCTTTTCAAA
TTTCCATTGGGACTTATTTTTGCGAATGACAAATTCACAAAATCCGCAAA
ATTAATCCCATTAAATTAAAGTAACTTAATCTACCCATAGAATATTATTT
AAGGTTAGCCCTCTGATTTGTTGTTGTTAAATATATTATGACAAATTCTA
TTCATCTGACATTATGATTTTATTACCTGTAAATTCCATGAAGCTTCTAA
AGGTGTTGTTGTTACTGTGTAATTCTCAACTTTAGTTGAGCTAGAATCTG
AGAATGTCTGTGTGTGTGTCTGTGTGTCACAAAAACTTTGGGGCAGGCTG
GAGACTTCCAAAATGGTCCGATTTGGCTGAAATTTTGCACACTTGATCCT
TGGGCAAATCCCTGGGGGTGCTTTTTCATTTTTTCAAAATTTTGATTTTT
GGGGCCTGGGGACGAGTTATTCGCCAAAACGATGCTAAAACTTTGGGGCA
GGCTGGAGACTTCAAAAATGATCCGAATGGGATGAAATTTTGCACACTTG
ATCCTTGGGCAAATCCCTGGGGGTGTTTTTTTCATTTTTTCAAAATTTTG
ATTTTTGGGGCCTGGGGACGAGTNNNNNNAGGCTAAAACCCAAAATGCTA
TAATTTTTCTTAAGCCATTAAGTTTACAATTGGGCCTACGAATGATTTCA
AAGATACTGAAGTTGAGCCACTGCGGTTAGCACGTTCGACAGTATTATAT
AGTATTATGTATTAATATATAAAATTTGATGGTAAATATAGTTCCTTTTT
CTTGTTGTTGCCGCAAAATAATTTAAAATGAAGAAATTTTTGTCTTGGAC
GCTTTTCTGAAAATTGAAAATCTTTTTATAGTTCAACATTTGTAAACAGA
AGCTACAAAGCAAACGAGAAAGCTTGAAAATCATGATGAAAGAATTGGAT
CAAGCACAAATTGAAAAAGATGTCTACAAAAACAAAGCTCGCCAGCTAGT
AAATATCTTTTTTTATAATATAATTTTACAAAATATCCATACTTCAAATT
TTAGAAAAAGAAAAATTACCTCAGATCACAAAGTGCTAAAACTTTTGAGC
TTGGTGCAGGTAAATCAGTCTAATATAATACAGAATGTTAGATATGTCTG
TGTGTGAATCCTTGTTGACAGACTTTAAACCCAGGCAGACACGCATAATT
AAAAAAAAAGGCCTTATTTAGTGATACGCCAAAAACAGACCAATCAGGTT
GAACCTGCATTACAAGGAAAAAATCTTCCTGTAAGTTACCTGCACCAAGA
GGTTAACCAATAACATACAAACATACAGAACTACATCACATAGTTTCCTG
GGTGGTTTAAAACCCCCCTAGATTTAATCAAACCAAACCCCCCTATATAT
AAATTTCTCAGACAATTTAGTGGGGAGGAAACTATGCACCGTCAACACGT
TTACCACTTGGATTCCCAGGCTAGGTTTGAATTGACTAAAGTCTAAGTTT
TTCACTTCCGTTATGTCCTTTTAGCAACGTGATTTTGAAGAGTTGAAGAC
AGCAGTTGGTGAAAGTTGGAATAACAACGAACATGCACTGAAATTTGGTG
AAAATGAAAAGAAAGTCAACGTGAGCTTATCACATACCATGATTGATCTG
TTTAAAATAATCATAGTCCTTGTAAAAAACACTGGTCTGGAAGCTTATTG
TTTTAACTTTTTTTTAGCCTTTCCTTTGTTNTGATTGATCTGTTTAAAAT
AATCATAGTCCTTGTAAAAAACACTGGTCTGGAAGCTTATTGTTTTAACT
TTTTTTTAGCCTTTCCTTTGTTCTAATCAAAAGATGAAAATCGACTTGCA
TAGTTTTTGATCACGTTACCAAGTAGTACTCCTCTTGGGATTGGTTTAAG
ATTTAATCACATGATCAAAAAGTGAGCAAAACAAACTAACTTCTCAACAC
AAGTTCAAGTAATAAACAATGGACAAAAACAAAATGCTTCCAGACCGGGG
TTTTTTATACGGACTATGAAATGATTGAATAAGATAAGTTATAGATCCAA
AGCAAAATAATTGCTTAGATTCTAGGTGTTTGCTTAAAAGAATTACAATA
AAGAAGGACTCTAGTCTACATTACTAAACTCAATGTTGTCAGACATTATT
TTAATAAAAGATTGGGCAAAAAAATAGCTCTTAACACTAACAATTAGGAA
AAATTGTAACCCTTTTCTCAATCTTTTTTTTCCAGACTTTGACCAATTTA
TTACAATATTCAAAAGACGAGAACGGGAGGTTGAAAACAGATCTGGAGAA
TATTCGCCAATTGTATAACGATTCCCAGAAAGACAACATTTTGCTAAGAA
ACAGTCTCACAAGACAAGAAGAGACGAAGAAAGTCAATGAAAATGGAGTC
AACGATAAAGAGAAACTAATTATACAACTGGAAGAATCTTTGGCAAAGGT
AAGTGAGAGTATCTTAGAAAGAAGTTATTTTACCGTTGGAAAGATAATTA
TCCAGTATTGCTAAATAAAAAATTGATTGGGAAGAATTTTTGAAATTGAA
AAATGAAAGAATTTGTTCACGTGTTTTACAACTCTTTCTAAATGAAAACA
ATTCAATGAAGTTATGAATTTAAACCATTGCAGATAGATCAAGAGTATCG
GGTCATTCGTTTAGTGTTTTTTATCTGTTGTCCATTTGGCAACGAATTCA
GACGAGATGGAGTTTTTATAAGACACTTTAATAATTGGTCATTAAGAATA
ATAAAAATGACGCGTTCTTTAGAAAAAGTAACAAAATTGTTTTATTACTG
GTTAACGACTAACCAAATCAAGTAATAGCTTGTAAAAACTCAAAAATAAA
AATAAATTAAAAATAATGTTATTTTTAATGAAAAAATCGTTTCTTTTTAT
TCTCAGCTGCATGATTTGGAAGATGAAGTAGAAGTATTACGAGAAGAAAA
CAAACAGATTGAGGACGAGGTAACTTTTCGTTTTGATTTCCATATGTAAC
TGTATTTAGCATTAAGGCCGGTCTCCACTTTCGAGCGACACGAGCCAAAA
CTTTTTGACGTTTTTGTAAGATCATTGGTCGGTTGAAAAATGAAGCAATT
CCATTGATCGAAATTGAGGTAACGGATGAAAAAAGAGGCAAATTGTTTCG
CTTACACTTTTGCCACTTTTGCCATTGTTCCCACTTCTGCCACCATCATG
TTGAAAAATTTTTTAAAAGTGTGAAAAGTGGCTCCTTCAGCTAACTTGTG
TCAGGCAATGTGTAAAAACGAGACCATGTTCCTTCTAATACGGGCCCGAA
ACAGTNGTAAGCCACATGATGGCCTCATTCTATGAGCAAAATAGTGGATG
ACATCAAAAATGTCACAAAACAGGGGTTAATTTTTGATTAGCATCAAGAA
TTTGTTCGCGTGTTTACAACTCTTTTTAAATGAAAACAATTCAATGAAGT
TATGAATTTAAACCATTGCAGATAGATCAAGAGTATCGGGTCATTCGTTT
AGTGTTTTTTATCTGTTGTCCATTTGCTAACCAATGTGCAACGAATTCAG
ACGAGATGGAGTTTTTATAAGATACTTTAATAATTGGTCATTAAGAAGTA
ATAAAAATGACAGCGTTCTTTAGAAAAAGTAACAAAATTGTTTTATTACT
GGTTAACGACTAACCAAATCAAGTAAGAGCTTGTAAAAACTCAAAAATAA
AAATAAATTAAAAATAATGTTATTTTTAATGAAAAAATCGTTTCTTTTTA
TTCTCAGCTGCATGATTTGGAAGATGAAGTAGAAGTATTACGAGAAGAAA
ACAAACAGATTGAGGACGAGGTAAC

Coding sequence (CDS) from alignment at scaffold_333:427254..431878-

>TCONS_00060061 ID=TCONS_00060061|Name=TCONS_00060061|organism=Clytia hemisphaerica|type=CDS|length=2700bp|location=Sequence derived from alignment at scaffold_333:427254..431878- (Clytia hemisphaerica)
CTGCATGATTTGGAAGATGAAGTAGAAGTATTACGAGAAGAAAACAAACA
GATTGAGGACGAGGTAACTTTGACCAATTTATTACAATATTCAAAAGACG
AGAACGGGAGGTTGAAAACAGATCTGGAGAATATTCGCCAATTGTATAAC
GATTCCCAGAAAGACAACATTTTGCTAAGAAACAGTCTCACAAGACAAGA
AGAGACGAAGAAAGTCAATGAAAATGGAGTCAACGATAAAGAGAAACTAA
TTATACAACTGGAAGAATCTTTGGCAAAGCAACGTGATTTTGAAGAGTTG
AAGACAGCAGTTGGTGAAAGTTGGAATAACAACGAACATGCACTGAAATT
TGGTGAAAATGAAAAGAAAGTCAACTTCAACATTTGTAAACAGAAGCTAC
AAAGCAAACGAGAAAGCTTGAAAATCATGATGAAAGAATTGGATCAAGCA
CAAATTGAAAAAGATGTCTACAAAAACAAAGCTCGCCAGCTAATGGCACT
CAGTCGAAGTGAAGAAAATTGGTCAGTCTTGATAAATGAGCTGCATGATT
TGGAAGATGAAGTAGAAGTATTACGAGAAGAAAACAAACAGATTGAGGAC
GAGGTAACTTTGACCAATTTATTACAATATTCAAAAGACGAGAACGGGAG
GTTGAAAACAGATCTGGAGAATATTCGCCAATTGTATAACGATTCCCAGA
AAGACAACATTTTGCTAAGAAACAGTCTCACAAGACAAGAAGAGACGAAG
AAAGTCAATGAAAATGGAGTCAACGATAAAGAGAAACTAATTATACAACT
GGAAGAATCTTTGGCAAAGCAACGTGATTTTGAAGAGTTGAAGACAGCAG
TTGGTGAAAGTTGGAATAACAACGAACATGCACTGAAATTTGGTGAAAAT
GAAAAGAAAGTCAACTTCAACATTTGTAAACAGAAGCTACAAAGCAAACG
AGAAAGCTTGAAAATCATGATGAAAGAATTGGATCAAGCACAAATTGAAA
AAGATGTCTACAAAAACAAAGCTCGCCAGCTAATGGCACTCAGTCGAAGT
GAAGAAAATTGGTCAGTCTTGATAAATGAGCTGCATGATTTGGAAGATGA
AGTAGAAGTATTACGAGAAGAAAACAAACAGATTGAGGACGAGGTAACTT
TGACCAATTTATTACAATATTCAAAAGACGAGAACGGGAGGTTGAAAACA
GATCTGGAGAATATTCGCCAATTGTATAACGATTCCCAGAAAGACAACAT
TTTGCTAAGAAACAGTCTCACAAGACAAGAAGAGACGAAGAAAGTCAATG
AAAATGGAGTCAACGATAAAGAGAAACTAATTATACAACTGGAAGAATCT
TTGGCAAAGCAACGTGATTTTGAAGAGTTGAAGACAGCAGTTGGTGAAAG
TTGGAATAACAACGAACATGCACTGAAATTTGGTGAAAATGAAAAGAAAG
TCAACTTCAACATTTGTAAACAGAAGCTACAAAGCAAACGAGAAAGCTTG
AAAATCATGATGAAAGAATTGGATCAAGCACAAATTGAAAAAGATGTCTA
CAAAAACAAAGCTCGCCAGCTAATGGCACTCAGTCGAAGTGAAGAAAATT
GGTCAGTCTTGATAAATGAGCTGCATGATTTGGAAGATGAAGTAGAAGTA
TTACGAGAAGAAAACAAACAGATTGAGGACGAGGTAACTTTGACCAATTT
ATTACAATATTCAAAAGACGAGAACGGGAGGTTGAAAACAGATCTGGAGA
ATATTCGCCAATTGTATAACGATTCCCAGAAAGACAACATTTTGCTAAGA
AACAGTCTCACAAGACAAGAAGAGACGAAGAAAGTCAATGAAAATGGAGT
CAACGATAAAGAGAAACTAATTATACAACTGGAAGAATCTTTGGCAAAGC
AACGTGATTTTGAAGAGTTGAAGACAGCAGTTGGTGAAAGTTGGAATAAC
AACGAACATGCACTGAAATTTGGTGAAAATGAAAAGAAAGTCAACTTCAA
CATTTGTAAACAGAAGCTACAAAGCAAACGAGAAAGCTTGAAAATCATGA
TGAAAGAATTGGATCAAGCACAAATTGAAAAAGATGTCTACAAAAACAAA
GCTCGCCAGCTAATGGCACTCAGTCGAAGTGAAGAAAATTGGTCAGTCTT
GATAAATGAGCTGCATGATTTGGAAGATGAAGTAGAAGTATTACGAGAAG
AAAACAAACAGATTGAGGACGAGGTAACTTTGACCAATTTATTACAATAT
TCAAAAGACGAGAACGGGAGGTTGAAAACAGATCTGGAGAATATTCGCCA
ATTGTATAACGATTCCCAGAAAGACAACATTTTGCTAAGAAACAGTCTCA
CAAGACAAGAAGAGACGAAGAAAGTCAATGAAAATGGAGTCAACGATAAA
GAGAAACTAATTATACAACTGGAAGAATCTTTGGCAAAGCAACGTGATTT
TGAAGAGTTGAAGACAGCAGTTGGTGAAAGTTGGAATAACAACGAACATG
CACTGAAATTTGGTGAAAATGAAAAGAAAGTCAACTTCAACATTTGTAAA
CAGAAGCTACAAAGCAAACGAGAAAGCTTGAAAATCATGATGAAAGAATT
GGATCAAGCACAAATTGAAAAAGATGTCTACAAAAACAAAGCTCGCCAGC
TAATGGCACTCAGTCGAAGTGAAGAAAATTGGTCAGTCTTGATAAATGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037778XLOC_037778Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060061-exon-scaffold_333-1575043694:431497..431878TCONS_00060061-exon-scaffold_333-1575043694:431497..431878Clytia hemisphaericaexon
TCONS_00060061-exon-scaffold_333-1575043694:430081..430197TCONS_00060061-exon-scaffold_333-1575043694:430081..430197Clytia hemisphaericaexon
TCONS_00060061-exon-scaffold_333-1575043694:429459..429554TCONS_00060061-exon-scaffold_333-1575043694:429459..429554Clytia hemisphaericaexon
TCONS_00060061-exon-scaffold_333-1575043694:428631..428843TCONS_00060061-exon-scaffold_333-1575043694:428631..428843Clytia hemisphaericaexon
TCONS_00060061-exon-scaffold_333-1575043694:427254..427321TCONS_00060061-exon-scaffold_333-1575043694:427254..427321Clytia hemisphaericaexon
TCONS_00060061-exon-scaffold_333-1510915933:431497..431878TCONS_00060061-exon-scaffold_333-1510915933:431497..431878Clytia hemisphaericaexon
TCONS_00060061-exon-scaffold_333-1510915933:430081..430197TCONS_00060061-exon-scaffold_333-1510915933:430081..430197Clytia hemisphaericaexon
TCONS_00060061-exon-scaffold_333-1510915933:429459..429554TCONS_00060061-exon-scaffold_333-1510915933:429459..429554Clytia hemisphaericaexon
TCONS_00060061-exon-scaffold_333-1510915933:428631..428843TCONS_00060061-exon-scaffold_333-1510915933:428631..428843Clytia hemisphaericaexon
TCONS_00060061-exon-scaffold_333-1510915933:427254..427321TCONS_00060061-exon-scaffold_333-1510915933:427254..427321Clytia hemisphaericaexon
TCONS_00060061-exon-scaffold_333-1491911889:431497..431878TCONS_00060061-exon-scaffold_333-1491911889:431497..431878Clytia hemisphaericaexon
TCONS_00060061-exon-scaffold_333-1491911889:430081..430197TCONS_00060061-exon-scaffold_333-1491911889:430081..430197Clytia hemisphaericaexon
TCONS_00060061-exon-scaffold_333-1491911889:429459..429554TCONS_00060061-exon-scaffold_333-1491911889:429459..429554Clytia hemisphaericaexon
TCONS_00060061-exon-scaffold_333-1491911889:428631..428843TCONS_00060061-exon-scaffold_333-1491911889:428631..428843Clytia hemisphaericaexon
TCONS_00060061-exon-scaffold_333-1491911889:427254..427321TCONS_00060061-exon-scaffold_333-1491911889:427254..427321Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060061-proteinTCONS_00060061-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_333supercontigscaffold_333:427254..431878 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
11.888	12.5263	3.58336	1.88545	7.56749	6.49006	10.7021	10.3073	6.34234	5.99611	4.76914	4.16235	3.20144	2.38792	3.17132	4.11639	3.79331	4.50191	2.62921	3.90504	3.65133	3.123	16.8628	15.0812	5.73933	5.55544	3.90197	4.31997	7.76334	8.21036
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019179Coiled-coil_dom-contain_pr_149
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060061 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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