TCONS_00060026 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060026
Unique NameTCONS_00060026
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1698

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060026 ID=TCONS_00060026|Name=TCONS_00060026|organism=Clytia hemisphaerica|type=transcript|length=1698bp
AAAGTACATTACTCTGAGTTTCGTGTTTTCACACTAGTCATTATGTACAA
AATGATTGGAAAAAATTTACCCTTTAGTTATTGAAGCGACATCCAGATAG
CAGGCTGGGCGGTGGAACTGACGATGCAGATCCTTTAAAGAAACATGCAT
TCTTCCGACACATTGATTGGAAAGATTTGTATGACAGGAATGTGGAGCCA
CCCTTTAAACCAGCCGTTTCATGCGAAGAAGATGTCAGCCAATTCGATCA
ACGCTTCACCAAAGAAACACCAGTAGATTCACCTTGTGATAAAATGCTCA
GTGACAGTGTTGATAAAATCTTCCAGGGTTTCACTTACGTGGCTCCATCA
ATTTTCGAGAATTGGGGAAAAGGAGGTCGGCAATCCTTCTCAGAACTTCA
CCTGTCACGCTCACTAAAgtcACCGAGAAAAACACAAGCTATGAGCCCAA
CCAAGGTTCAACCGTCAGGCGAAACACAATTTGGTTTCAACCAAAAAGAA
TCTGATTCTGGTCTACGTAATAAATCACCGCCTAAACAACCAGTCTGCAC
TAATCAAAATGGTAGCAGTAGTACCGCTATACCCGTTCGTTCACAAGAGG
CGTCGCCAAGAATCGCTGCTATAAAAGAAGAGCCTTCCACTGGTGTCGGG
AGTAGCTATTACGAAGTGGGTAGCGTACCTTACACCGGGAGTCAGGCTAA
CGGTTATCACTCCAACACGCCCGCGGGCTACTACGATTATTCGGATAGTT
TTCGAAGCAACGATGGAGCGTTCCCGTCCTCCTTTCACAACAGTAATTAC
CCTCCTTCACTGGGCTTGTTGAAAACGGTTGACACAGGCGAACCGGCACC
TTCACGAATGAATTTCGAAACGGGTAGTTACGATACGTGTGCAGAATATT
TGTCTCATTCCGCTCTTACACATCATTCACAGAACTTTTATCGAAGTAAT
TCTTCGAACAAGTCATCGGCTTCCAGTCTACCTCACCACCATCATCATCC
CAATAGCAACGGCTCTCACCATCCGACGCACGCGCATTCTAATAATCACG
ACACGCACGTGCAATCGAGCAGCCACAATTCATTGCATCATGGCAGGTAT
AAAGACAATTACAACCCTCACAACATGAGTATGGACTTAACTTTTGAGAA
TAGCATGTACGGGCTTGCTGGTCCTGTCCCGACCTCAAATTACGAGTCAA
CTAACGGTGCTTCAAATGTGGACCGAATGGATGACTTTGAACCGTTCGAN
ACGGGCTTGCTGGTCCTGTCCCGACCTCAAATTACGAGTCAACTAACGGT
GCTTCAAATGTGGACCGAATGGATGACTTTGAACCGTTCGAATTTTTACA
ATGTGATAACAGTATGTCGCCTAGGCAACCACCCGTTGCGACGTCAACAC
ATCAAACGACCAGTCAGAATCAAGAACCTCGCTTTCGTATACCGTTACTG
TAAGTGGTTGGCTTTAGGTGTAAATCTTGTTGTCAGAAATCTAGTTTTCT
AGTTCTTGGTAGTTgtacgtttttttatgaaataaaatgaaCCGACCTCC
TTTTGAAAGGCTCCAAACATTATAGAtactatttttttactttttttttc
actGCATTATTTTGATTCACTCCCGTCCTGAGAAAATTAATGATATTCTT
CATATGGAAAGTATAGTGATTTAGATTCCAGGTATACAACTGGGAGTA
Run BLAST on NCBI

protein sequence of TCONS_00060026-protein

>TCONS_00060026-protein ID=TCONS_00060026-protein|Name=TCONS_00060026-protein|organism=Clytia hemisphaerica|type=polypeptide|length=402bp
MLSDSVDKIFQGFTYVAPSIFENWGKGGRQSFSELHLSRSLKSPRKTQAM
SPTKVQPSGETQFGFNQKESDSGLRNKSPPKQPVCTNQNGSSSTAIPVRS
QEASPRIAAIKEEPSTGVGSSYYEVGSVPYTGSQANGYHSNTPAGYYDYS
DSFRSNDGAFPSSFHNSNYPPSLGLLKTVDTGEPAPSRMNFETGSYDTCA
EYLSHSALTHHSQNFYRSNSSNKSSASSLPHHHHHPNSNGSHHPTHAHSN
NHDTHVQSSSHNSLHHGRYKDNYNPHNMSMDLTFENSMYGLAGPVPTSNY
ESTNGASNVDRMDDFEPFXTGLLVLSRPQITSQLTVLQMWTEWMTLNRSN
FYNVITVCRLGNHPLRRQHIKRPVRIKNLAFVYRYCKWLALGVNLVVRNL
VF
Run BLAST on NCBI

transcript from alignment at scaffold_333:171774..175403-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060026 ID=TCONS_00060026|Name=TCONS_00060026|organism=Clytia hemisphaerica|type=transcript|length=3630bp|location=Sequence derived from alignment at scaffold_333:171774..175403- (Clytia hemisphaerica)
AAAGTACATTACTCTGAGTTTCGTGTTTTCACACTAGTCATTATGTACAA
AATGATTGGAAAAAATTTACCCTTTAGTTATTGAAGCGACATCCAGATAG
CAGGCTGGGCGGTGGAACTGACGATGCAGATCCTTTAAAGGTACATGCCC
TTCATCACGTTCCGCACTCGTAGATACTGGTTTAATCGGAATAATTTTTT
TGCCAAATTTAATTTCGCGGTCCCAAAAAGTTGTGAAATTTCTGTATATA
TTTTATTATTATGCCAATTGGCTTTTTAAAAATTGCGTTTAGATTAAATT
TGTGAAACCAGCTAAAAATAGCGAGAAAATATTAATGTTAGCCTAAATCG
AAAGATCTTGGTGTAAAATTTTTATTTTACAATCATTTTTGTTGTCATAG
AAACATGCATTCTTCCGACACATTGATTGGAAAGATTTGTATGACAGGAA
TGTGGAGCCACCCTTTAAACCAGCCGTTGTAAGTTTTTGTTTGTTATTAC
ATTGCAAGTCAAATTGCGAAAAATTATAGTTATATATATCTTAATTTCAT
TTGTAGAATCTTTCATTTGTGGTACTGAGCTTTGCTAAGCATTTCTGTCT
TGGAATCTGCTATAGTTACAATAAGAGCTAATAATGAGTTTATGTATGTG
TGGTGTTCTACGACGAAGACGGTAAATTTGACTAGCTCCTGGCTAGCTGA
GGACAACGGTAAATCAGCACTTTTACCGTCCTCGATTTGCGGGTCAGAAG
TGCGGGTTATTACAAAATACTGCAAACTCGCTAATATGTGTTACAAACCA
GTATGCGTCAAAGAATTAGAGAAAAGATTGTTGACCTCTTATTCTGGACG
TCTTTTAAAATTCTCTATCATACTACAGTCGCAGTCGTAGTCGGAATACA
TCTTAAGTGATAGTAGTTCGAAATGCATTTTTGAGTCTTGTTTATCCTAT
CCTTCTCACATACAGTCATGCGAAGAAGATGTCAGCCAATTCGATCAACG
CTTCACCAAAGAAACACCAGTAGATTCACCTTGTGATAAAATGCTCAGTG
ACAGTGTTGATAAAATCTTCCAGGTAGGTTTCCCATATCACGCGACAGGA
CAATCTCCCCACCAAAAATAATGTCTTTTTTTCATTTCTTTTCAGCACGT
ATCCTATTTTTAATCAAATAGAGAACCTTTATGAACAAAACATTGTGAAC
CTTTCATTTACTTCTTCACAGGGTTTCACTTACGTGGCTCCATCAATTTT
CGAGAATTGGGGAAAAGGAGGTCGGCAATCCTTCTCAGAACTTCACCTGT
CACGCTCACTAAAGTAAGTATTTTTATACAGTCTTCATAACTCGAGCACG
AACGGGGAACATAAATTTGTTCGAGTTATGGAGTATGGCTTATAAGTAAT
TGTTAACTAAGGGAACGAGAAAAACGTGCTAAGGAGATATTCGAGTTATG
GAGGTTTGATTTAAAGAAACTCTACTGTATTATAATAATTTTAAAAACTT
AAAAACCTGTGTGTTACCTTTCCACATTCAGTTATAGAAATGGACGTTTG
TGATGTCGGATGGGAGCCACTTTTACAGAAAATCTTTTTCAATATACATA
TTCTCTGTAAAAGCTCGGTTCAGACTTTTTTCATAAGATTATTCTATTGC
ATCAGTTCTAATCCAGAGTTTTCTTTTTTTCAGGTCACCGAGAAAAACAC
AAGCTATGAGGTAAGCTGGAGATTTAGTAACTTTTTTAATTATTCCTATG
TTTTATACAACATAGTGTGGTGTTAGTCCAGTATCATCTAGGTAATGAAT
GACTTTTTACAAACCTAGTTAAAAAGTTCTTATCTTCACAATAGTATATT
AATTAAAATTGGTTGTGATCACACACCCAATTGATAATGGACAAACCAGA
AAAAAAGGAGCTCAAAACTATTGGACCTTACTATATACACTTTGCACCAA
ATAAGCCTCTATTTTACTTAAAGATTTGTGTCCTAATGAATGGTGAGTGA
GCTGAGAATACCACTTGTACTTAAACCTCCGTGTATCTTTTGATTCGACC
TGTTATTCGAGTACTTCATTTAGGCTACTTATTAAGGTCCATGCTCACTT
TTGAATTTATAACCCATTATGAAAGGATGGTTTACACTACACGTAAATTA
ACCAAAATCTAAATAACAATATAGATAAAACTTAAACCACATCTGCAAAT
ACACAAAATACCTTGGTTGGGCTTTTAAAACTTTTAAACAATAATCGCAA
ATGTAATACATAATGATAATTTAAATACCGTAATGTAATGTAAAACAGGC
CCAACGAAGGTAGCATAAAAGAATAACAATAACGAATATATATAAAGCAC
ATATTTTCTTCCCCTCCTTTTTTGTAGCCCAACCAAGGTTCAACCGTCAG
GCGAAACACAATTTGGTTTCAACCAAAAAGAATCTGATTCTGGTCTACGT
AATAAATCACCGCCTAAACAACCAGTCTGCACTAATCAAAATGGTAGCAG
TAGTACCGCTATACCCGTTCGTTCACAAGAGGCGTCGCCAAGAATCGCTG
CTATAAAAGAAGAGCCTTCCACTGGTGTCGGGAGTAGCTATTACGAAGTG
GGTAGCGTACCTTACACCGGGAGTCAGGCTAACGGTTATCACTCCAACAC
GCCCGCGGGCTACTACGATTATTCGGATAGTTTTCGAAGCAACGATGGAG
CGTTCCCGTCCTCCTTTCACAACAGTAATTACCCTCCTTCACTGGGCTTG
TTGAAAACGGTTGACACAGGCGAACCGGCACCTTCACGAATGAATTTCGA
AACGGGTAGTTACGATACGTGTGCAGAATATTTGTCTCATTCCGCTCTTA
CACATCATTCACAGAACTTTTATCGAAGTAATTCTTCGAACAAGTCATCG
GCTTCCAGTCTACCTCACCACCATCATCATCCCAATAGCAACGGCTCTCA
CCATCCGACGCACGCGCATTCTAATAATCACGACACGCACGTGCAATCGA
GCAGCCACAATTCATTGCATCATGGCAGGTATAAAGACAATTACAACCCT
CACAACATGAGTATGGACTTAACTTTTGAGAATAGCATGTACGGGCTTGC
TGGTCCTGTCCCGACCTCAAATTACGAGTCAACTAACGGTGCTTCAAATG
TGGACCGAATGGATGACTTTGAACCGTTCGANACGGGCTTGCTGGTCCTG
TCCCGACCTCAAATTACGAGTCAACTAACGGTGCTTCAAATGTGGACCGA
ATGGATGACTTTGAACCGTTCGAATTTTTACAATGTGATAACAGTATGTC
GCCTAGGCAACCACCCGTTGCGACGTCAACACATCAAACGACCAGTCAGA
ATCAAGAACCTCGCTTTCGTATACCGTTACTGTAAGTGGTTGGCTTTAGG
TGTAAATCTTGTTGTCAGAAATCTAGTTTTCTAGTTCTTGGTAGTTGTAC
GTTTTTTTATGAAATAAAATGAACCGACCTCCTTTTGAAAGGCTCCAAAC
ATTATAGATACTATTTTTTTACTTTTTTTTTCACTGCATTATTTTGATTC
ACTCCCGTCCTGAGAAAATTAATGATATTCTTCATATGGAAAGTATAGTG
ATTTAGATTCCAGGTATACAACTGGGAGTA

Coding sequence (CDS) from alignment at scaffold_333:171774..175403-

>TCONS_00060026 ID=TCONS_00060026|Name=TCONS_00060026|organism=Clytia hemisphaerica|type=CDS|length=4836bp|location=Sequence derived from alignment at scaffold_333:171774..175403- (Clytia hemisphaerica)
CCCAACCAAGGTTCAACCGTCAGGCGAAACACAATTTGGTTTCAACCAAA
AAGAATCTGATTCTGGTCTACGTAATAAATCACCGCCTAAACAACCAGTC
TGCACTAATCAAAATGGTAGCAGTAGTACCGCTATACCCGTTCGTTCACA
AGAGGCGTCGCCAAGAATCGCTGCTATAAAAGAAGAGCCTTCCACTGGTG
TCGGGAGTAGCTATTACGAAGTGGGTAGCGTACCTTACACCGGGAGTCAG
GCTAACGGTTATCACTCCAACACGCCCGCGGGCTACTACGATTATTCGGA
TAGTTTTCGAAGCAACGATGGAGCGTTCCCGTCCTCCTTTCACAACAGTA
ATTACCCTCCTTCACTGGGCTTGTTGAAAACGGTTGACACAGGCGAACCG
GCACCTTCACGAATGAATTTCGAAACGGGTAGTTACGATACGTGTGCAGA
ATATTTGTCTCATTCCGCTCTTACACATCATTCACAGAACTTTTATCGAA
GTAATTCTTCGAACAAGTCATCGGCTTCCAGTCTACCTCACCACCATCAT
CATCCCAATAGCAACGGCTCTCACCATCCGACGCACGCGCATTCTAATAA
TCACGACACGCACGTGCAATCGAGCAGCCACAATTCATTGCATCATGGCA
GGTATAAAGACAATTACAACCCTCACAACATGAGTATGGACTTAACTTTT
GAGAATAGCATGTACGGGCTTGCTGGTCCTGTCCCGACCTCAAATTACGA
GTCAACTAACGGTGCTTCAAATGTGGACCGAATGGATGACTTTGAACCGT
TCGANACGGGCTTGCTGGTCCTGTCCCGACCTCAAATTACGAGTCAACTA
ACGGTGCTTCAAATGTGGACCGAATGGATGACTTTGAACCGTTCGAATTT
TTACAATGTGATAACAGTATGTCGCCTAGGCAACCACCCGTTGCGACGTC
AACACATCAAACGACCAGTCAGAATCAAGAACCTCGCTTTCGTATACCGT
TACTGTAAGTGGTTGGCTTTAGGTGTAAATCTTGTTGTCAGAAATCTAGT
TTTCTAGGTCACCGAGAAAAACACAAGCTATGAGGGTTTCACTTACGTGG
CTCCATCAATTTTCGAGAATTGGGGAAAAGGAGGTCGGCAATCCTTCTCA
GAACTTCACCTGTCACGCTCACTAAAATGCTCAGTGACAGTGTTGATAAA
ATCTTCCAGCCCAACCAAGGTTCAACCGTCAGGCGAAACACAATTTGGTT
TCAACCAAAAAGAATCTGATTCTGGTCTACGTAATAAATCACCGCCTAAA
CAACCAGTCTGCACTAATCAAAATGGTAGCAGTAGTACCGCTATACCCGT
TCGTTCACAAGAGGCGTCGCCAAGAATCGCTGCTATAAAAGAAGAGCCTT
CCACTGGTGTCGGGAGTAGCTATTACGAAGTGGGTAGCGTACCTTACACC
GGGAGTCAGGCTAACGGTTATCACTCCAACACGCCCGCGGGCTACTACGA
TTATTCGGATAGTTTTCGAAGCAACGATGGAGCGTTCCCGTCCTCCTTTC
ACAACAGTAATTACCCTCCTTCACTGGGCTTGTTGAAAACGGTTGACACA
GGCGAACCGGCACCTTCACGAATGAATTTCGAAACGGGTAGTTACGATAC
GTGTGCAGAATATTTGTCTCATTCCGCTCTTACACATCATTCACAGAACT
TTTATCGAAGTAATTCTTCGAACAAGTCATCGGCTTCCAGTCTACCTCAC
CACCATCATCATCCCAATAGCAACGGCTCTCACCATCCGACGCACGCGCA
TTCTAATAATCACGACACGCACGTGCAATCGAGCAGCCACAATTCATTGC
ATCATGGCAGGTATAAAGACAATTACAACCCTCACAACATGAGTATGGAC
TTAACTTTTGAGAATAGCATGTACGGGCTTGCTGGTCCTGTCCCGACCTC
AAATTACGAGTCAACTAACGGTGCTTCAAATGTGGACCGAATGGATGACT
TTGAACCGTTCGANACGGGCTTGCTGGTCCTGTCCCGACCTCAAATTACG
AGTCAACTAACGGTGCTTCAAATGTGGACCGAATGGATGACTTTGAACCG
TTCGAATTTTTACAATGTGATAACAGTATGTCGCCTAGGCAACCACCCGT
TGCGACGTCAACACATCAAACGACCAGTCAGAATCAAGAACCTCGCTTTC
GTATACCGTTACTGTAAGTGGTTGGCTTTAGGTGTAAATCTTGTTGTCAG
AAATCTAGTTTTCTAGGTCACCGAGAAAAACACAAGCTATGAGGGTTTCA
CTTACGTGGCTCCATCAATTTTCGAGAATTGGGGAAAAGGAGGTCGGCAA
TCCTTCTCAGAACTTCACCTGTCACGCTCACTAAAATGCTCAGTGACAGT
GTTGATAAAATCTTCCAGCCCAACCAAGGTTCAACCGTCAGGCGAAACAC
AATTTGGTTTCAACCAAAAAGAATCTGATTCTGGTCTACGTAATAAATCA
CCGCCTAAACAACCAGTCTGCACTAATCAAAATGGTAGCAGTAGTACCGC
TATACCCGTTCGTTCACAAGAGGCGTCGCCAAGAATCGCTGCTATAAAAG
AAGAGCCTTCCACTGGTGTCGGGAGTAGCTATTACGAAGTGGGTAGCGTA
CCTTACACCGGGAGTCAGGCTAACGGTTATCACTCCAACACGCCCGCGGG
CTACTACGATTATTCGGATAGTTTTCGAAGCAACGATGGAGCGTTCCCGT
CCTCCTTTCACAACAGTAATTACCCTCCTTCACTGGGCTTGTTGAAAACG
GTTGACACAGGCGAACCGGCACCTTCACGAATGAATTTCGAAACGGGTAG
TTACGATACGTGTGCAGAATATTTGTCTCATTCCGCTCTTACACATCATT
CACAGAACTTTTATCGAAGTAATTCTTCGAACAAGTCATCGGCTTCCAGT
CTACCTCACCACCATCATCATCCCAATAGCAACGGCTCTCACCATCCGAC
GCACGCGCATTCTAATAATCACGACACGCACGTGCAATCGAGCAGCCACA
ATTCATTGCATCATGGCAGGTATAAAGACAATTACAACCCTCACAACATG
AGTATGGACTTAACTTTTGAGAATAGCATGTACGGGCTTGCTGGTCCTGT
CCCGACCTCAAATTACGAGTCAACTAACGGTGCTTCAAATGTGGACCGAA
TGGATGACTTTGAACCGTTCGANACGGGCTTGCTGGTCCTGTCCCGACCT
CAAATTACGAGTCAACTAACGGTGCTTCAAATGTGGACCGAATGGATGAC
TTTGAACCGTTCGAATTTTTACAATGTGATAACAGTATGTCGCCTAGGCA
ACCACCCGTTGCGACGTCAACACATCAAACGACCAGTCAGAATCAAGAAC
CTCGCTTTCGTATACCGTTACTGTAAGTGGTTGGCTTTAGGTGTAAATCT
TGTTGTCAGAAATCTAGTTTTCTAGGTCACCGAGAAAAACACAAGCTATG
AGGGTTTCACTTACGTGGCTCCATCAATTTTCGAGAATTGGGGAAAAGGA
GGTCGGCAATCCTTCTCAGAACTTCACCTGTCACGCTCACTAAAATGCTC
AGTGACAGTGTTGATAAAATCTTCCAGCCCAACCAAGGTTCAACCGTCAG
GCGAAACACAATTTGGTTTCAACCAAAAAGAATCTGATTCTGGTCTACGT
AATAAATCACCGCCTAAACAACCAGTCTGCACTAATCAAAATGGTAGCAG
TAGTACCGCTATACCCGTTCGTTCACAAGAGGCGTCGCCAAGAATCGCTG
CTATAAAAGAAGAGCCTTCCACTGGTGTCGGGAGTAGCTATTACGAAGTG
GGTAGCGTACCTTACACCGGGAGTCAGGCTAACGGTTATCACTCCAACAC
GCCCGCGGGCTACTACGATTATTCGGATAGTTTTCGAAGCAACGATGGAG
CGTTCCCGTCCTCCTTTCACAACAGTAATTACCCTCCTTCACTGGGCTTG
TTGAAAACGGTTGACACAGGCGAACCGGCACCTTCACGAATGAATTTCGA
AACGGGTAGTTACGATACGTGTGCAGAATATTTGTCTCATTCCGCTCTTA
CACATCATTCACAGAACTTTTATCGAAGTAATTCTTCGAACAAGTCATCG
GCTTCCAGTCTACCTCACCACCATCATCATCCCAATAGCAACGGCTCTCA
CCATCCGACGCACGCGCATTCTAATAATCACGACACGCACGTGCAATCGA
GCAGCCACAATTCATTGCATCATGGCAGGTATAAAGACAATTACAACCCT
CACAACATGAGTATGGACTTAACTTTTGAGAATAGCATGTACGGGCTTGC
TGGTCCTGTCCCGACCTCAAATTACGAGTCAACTAACGGTGCTTCAAATG
TGGACCGAATGGATGACTTTGAACCGTTCGANACGGGCTTGCTGGTCCTG
TCCCGACCTCAAATTACGAGTCAACTAACGGTGCTTCAAATGTGGACCGA
ATGGATGACTTTGAACCGTTCGAATTTTTACAATGTGATAACAGTATGTC
GCCTAGGCAACCACCCGTTGCGACGTCAACACATCAAACGACCAGTCAGA
ATCAAGAACCTCGCTTTCGTATACCGTTACTGTAAGTGGTTGGCTTTAGG
TGTAAATCTTGTTGTCAGAAATCTAGTTTTCTAGGTCACCGAGAAAAACA
CAAGCTATGAGGGTTTCACTTACGTGGCTCCATCAATTTTCGAGAATTGG
GGAAAAGGAGGTCGGCAATCCTTCTCAGAACTTCACCTGTCACGCTCACT
AAAATGCTCAGTGACAGTGTTGATAAAATCTTCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037770XLOC_037770Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060026-exon-scaffold_333-1575043694:175264..175403TCONS_00060026-exon-scaffold_333-1575043694:175264..175403Clytia hemisphaericaexon
TCONS_00060026-exon-scaffold_333-1575043694:174926..175003TCONS_00060026-exon-scaffold_333-1575043694:174926..175003Clytia hemisphaericaexon
TCONS_00060026-exon-scaffold_333-1575043694:174331..174438TCONS_00060026-exon-scaffold_333-1575043694:174331..174438Clytia hemisphaericaexon
TCONS_00060026-exon-scaffold_333-1575043694:174091..174182TCONS_00060026-exon-scaffold_333-1575043694:174091..174182Clytia hemisphaericaexon
TCONS_00060026-exon-scaffold_333-1575043694:173694..173720TCONS_00060026-exon-scaffold_333-1575043694:173694..173720Clytia hemisphaericaexon
TCONS_00060026-exon-scaffold_333-1575043694:171774..173026TCONS_00060026-exon-scaffold_333-1575043694:171774..173026Clytia hemisphaericaexon
TCONS_00060026-exon-scaffold_333-1510915933:175264..175403TCONS_00060026-exon-scaffold_333-1510915933:175264..175403Clytia hemisphaericaexon
TCONS_00060026-exon-scaffold_333-1510915933:174926..175003TCONS_00060026-exon-scaffold_333-1510915933:174926..175003Clytia hemisphaericaexon
TCONS_00060026-exon-scaffold_333-1510915933:174331..174438TCONS_00060026-exon-scaffold_333-1510915933:174331..174438Clytia hemisphaericaexon
TCONS_00060026-exon-scaffold_333-1510915933:174091..174182TCONS_00060026-exon-scaffold_333-1510915933:174091..174182Clytia hemisphaericaexon
TCONS_00060026-exon-scaffold_333-1510915933:173694..173720TCONS_00060026-exon-scaffold_333-1510915933:173694..173720Clytia hemisphaericaexon
TCONS_00060026-exon-scaffold_333-1510915933:171774..173026TCONS_00060026-exon-scaffold_333-1510915933:171774..173026Clytia hemisphaericaexon
TCONS_00060026-exon-scaffold_333-1491911889:175264..175403TCONS_00060026-exon-scaffold_333-1491911889:175264..175403Clytia hemisphaericaexon
TCONS_00060026-exon-scaffold_333-1491911889:174926..175003TCONS_00060026-exon-scaffold_333-1491911889:174926..175003Clytia hemisphaericaexon
TCONS_00060026-exon-scaffold_333-1491911889:174331..174438TCONS_00060026-exon-scaffold_333-1491911889:174331..174438Clytia hemisphaericaexon
TCONS_00060026-exon-scaffold_333-1491911889:174091..174182TCONS_00060026-exon-scaffold_333-1491911889:174091..174182Clytia hemisphaericaexon
TCONS_00060026-exon-scaffold_333-1491911889:173694..173720TCONS_00060026-exon-scaffold_333-1491911889:173694..173720Clytia hemisphaericaexon
TCONS_00060026-exon-scaffold_333-1491911889:171774..173026TCONS_00060026-exon-scaffold_333-1491911889:171774..173026Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060026-proteinTCONS_00060026-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_333supercontigscaffold_333:171774..175403 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.30027	3.89838	3.74777	4.16896	32.6912	27.1573	19.506	22.0347	11.9019	19.2929	14.8825	7.87943	13.3784	11.0482	7.58314	9.26074	15.3948	12.7945	9.58817	14.6912	7.95845	10.6582	8.35484	9.78205	23.771	21.4262	20.9728	18.4888	20.6784	21.8166
Blast
[Close]
BLAST of TCONS_00060026 vs. Swiss-Prot (Human)
Match: KS6B1 (Ribosomal protein S6 kinase beta-1 OS=Homo sapiens GN=RPS6KB1 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 1.116e-32
Identity = 76/198 (38.38%), Postives = 114/198 (57.58%), Query Frame = 3 
Query:   42 YVQNDWKKFTL*LLKRHPDSRLGGGTDDADPLKKHAFFRHIDWKDLYDRNVEPPFKPAVSCEEDVSQFDQRFTKETPVDSPCDKMLSDSVDKIFQGFTYVAPSIFENWGKGGRQSFSELHLSRSLKSPRKTQAMSPTKVQPSGETQFGFNQKESDSGLRN-KSPPKQPVCTN--------QNGSSSTAIPVRSQEASP 608
            Y+  + +     LLKR+  SRLG G  DA  ++ H FFRHI+W++L  R VEPPFKP +  EEDVSQFD +FT++TPVDSP D  LS+S +++F GFTYVAPS+ E+     ++ FS       ++SPR+      T V P   +   F  + + +   N ++P + P+ T+         +G +S  +P+R   + P
Sbjct:  315 YLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQFDSKFTRQTPVDSPDDSTLSESANQVFLGFTYVAPSVLESV----KEKFS---FEPKIRSPRRFIGSPRTPVSPVKFSPGDFWGRGASASTANPQTPVEYPMETSGIEQMDVTMSGEASAPLPIRQPNSGP 505
The following BLAST results are available for this feature:
BLAST of TCONS_00060026 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KS6B11.116e-3238.38Ribosomal protein S6 kinase beta-1 OS=Homo sapiens... [more]
back to top