TCONS_00060025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060025
Unique NameTCONS_00060025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1901

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060025 ID=TCONS_00060025|Name=TCONS_00060025|organism=Clytia hemisphaerica|type=transcript|length=1901bp
AAAGTACATTACTCTGAGTTTCGTGTTTTCACACTAGTCATTATGTACAA
AATGATTGGAAAAAATTTACCCTTTAGTTATTGAAGCGACATCCAGATAG
CAGGCTGGGCGGTGGAACTGACGATGCAGATCCTTTAAAGAAACATGCAT
TCTTCCGACACATTGATTGGAAAGATTTGTATGACAGGAATGTGGAGCCA
CCCTTTAAACCAGCCGTTTCATGCGAAGAAGATGTCAGCCAATTCGATCA
ACGCTTCACCAAAGAAACACCAGTAGATTCACCTTGTGATAAAATGCTCA
GTGACAGTGTTGATAAAATCTTCCAGGGTTTCACTTACGTGGCTCCATCA
ATTTTCGAGAATTGGGGAAAAGGAGGTCGGCAATCCTTCTCAGAACTTCA
CCTGTCACGCTCACTAAAgtcACCGAGAAAAACACAAGCTATGAGttttg
aattttgagagaaacaatggtggaacaaaaacaattTGGACGTGTggaaa
aaatgatcaaaatgaggaaaaagGATGTACGAAAGTAACTAGTCACTAGG
CTATgtggaaaatttagaaaaatgggATTTGTTAAGATGATAAAATGATT
ATTTGGAGTTGAATTTGTACTGTTGATGAAGAATAATGGCGGATATTGTT
AAGATTCCGATTTTGAGAAAGTCGGTTTTCAAAATTCCGATACAAATCCG
AATCGGGATTTCGGATTAATGCTACTTGAGATTTTATACAAAATGTAAAC
TTGCGAGAAAAgacaattattattttttgaattattatagctgaaatatt
tatttaaagaatgtattttgaagtaaaaaaggaATATTGTTTCTTGCAAA
TAAAACCAAACTATATTTGTTTGCAAGCTGAATGGTAAATCACTCAGATT
CAAATTTCTCTCTGATGGGAATTAGtactaaaaaatctttattttggaAT
ATGGATTTGTCACTTTTAGAATTGATGCTACAATAGATACTGTTTTCCGT
TGTTTTGACTAAAATTTTTTTGGATCCATTTATTATCTTAGNGATACTGT
TTTCCGTTGTTTTGACTAAAATTCTTTTGGATCCATTTATTATCTTACCC
TTAAatattttaatagattttacaCTTATAATACtcacattttgatttta
atatcaTCCCCTAGTTATCACAATTTTATTACCATTTATTTCGCTAATTT
TTGGTAGAATAATCAATTTACAAGAGTTTATTTTTCATCGATGTAATTTT
TAGGACCATGTCATCCTTGAGTCGCCACGAGATCGTAAAACAAAATTACG
AAGCAGGGGAGGGTTTGCGAGGCTGCAAAGTACCGGAATATTGGTAACTT
TTCATGCCTGCGTTCCGGCCAAATACCGGACAAAATGTTCCACCGAGTGC
TAGAATTTAAGCCTTTCTAAACCAGAATATCGGTTAATACCGGAATCTCA
GTGACCCCTCTTCAAAGGCATGAAAAAGTAGTGTTTAAAAAGCTggaaga
aagaattttttttattcatcgGACACTAAGGCAATGCCAATAGCATTTAC
AATAAACTGTATCAACAAAGCAACAGACATTTTGTCATGTAGATTTGTGT
TGACTCTTTCGACCTTCAAACTGTTTTATTTCAGTTATGATTCCAAACTA
CCGAACTATTTGACCCATGGAGGAgtgtatttttcaacttttgcaTGCAT
CAACCCCTTGGGAAGTGTACTTCACCGTTGTGCTTTTAATTTACCTGTGT
ATGATAGATTACAAGCTTTTTGCTTGGATGAAACAAAGATTAAGTAGAGA
TATCAATTTTTAGCATTATTTACTtaggttttagattttttgctttaaat
tttttcgtttttttgtatggttttataagaaaaaagaaagccATCCCTCT
G
Run BLAST on NCBI

transcript from alignment at scaffold_333:165877..175403-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060025 ID=TCONS_00060025|Name=TCONS_00060025|organism=Clytia hemisphaerica|type=transcript|length=9527bp|location=Sequence derived from alignment at scaffold_333:165877..175403- (Clytia hemisphaerica)
AAAGTACATTACTCTGAGTTTCGTGTTTTCACACTAGTCATTATGTACAA
AATGATTGGAAAAAATTTACCCTTTAGTTATTGAAGCGACATCCAGATAG
CAGGCTGGGCGGTGGAACTGACGATGCAGATCCTTTAAAGGTACATGCCC
TTCATCACGTTCCGCACTCGTAGATACTGGTTTAATCGGAATAATTTTTT
TGCCAAATTTAATTTCGCGGTCCCAAAAAGTTGTGAAATTTCTGTATATA
TTTTATTATTATGCCAATTGGCTTTTTAAAAATTGCGTTTAGATTAAATT
TGTGAAACCAGCTAAAAATAGCGAGAAAATATTAATGTTAGCCTAAATCG
AAAGATCTTGGTGTAAAATTTTTATTTTACAATCATTTTTGTTGTCATAG
AAACATGCATTCTTCCGACACATTGATTGGAAAGATTTGTATGACAGGAA
TGTGGAGCCACCCTTTAAACCAGCCGTTGTAAGTTTTTGTTTGTTATTAC
ATTGCAAGTCAAATTGCGAAAAATTATAGTTATATATATCTTAATTTCAT
TTGTAGAATCTTTCATTTGTGGTACTGAGCTTTGCTAAGCATTTCTGTCT
TGGAATCTGCTATAGTTACAATAAGAGCTAATAATGAGTTTATGTATGTG
TGGTGTTCTACGACGAAGACGGTAAATTTGACTAGCTCCTGGCTAGCTGA
GGACAACGGTAAATCAGCACTTTTACCGTCCTCGATTTGCGGGTCAGAAG
TGCGGGTTATTACAAAATACTGCAAACTCGCTAATATGTGTTACAAACCA
GTATGCGTCAAAGAATTAGAGAAAAGATTGTTGACCTCTTATTCTGGACG
TCTTTTAAAATTCTCTATCATACTACAGTCGCAGTCGTAGTCGGAATACA
TCTTAAGTGATAGTAGTTCGAAATGCATTTTTGAGTCTTGTTTATCCTAT
CCTTCTCACATACAGTCATGCGAAGAAGATGTCAGCCAATTCGATCAACG
CTTCACCAAAGAAACACCAGTAGATTCACCTTGTGATAAAATGCTCAGTG
ACAGTGTTGATAAAATCTTCCAGGTAGGTTTCCCATATCACGCGACAGGA
CAATCTCCCCACCAAAAATAATGTCTTTTTTTCATTTCTTTTCAGCACGT
ATCCTATTTTTAATCAAATAGAGAACCTTTATGAACAAAACATTGTGAAC
CTTTCATTTACTTCTTCACAGGGTTTCACTTACGTGGCTCCATCAATTTT
CGAGAATTGGGGAAAAGGAGGTCGGCAATCCTTCTCAGAACTTCACCTGT
CACGCTCACTAAAGTAAGTATTTTTATACAGTCTTCATAACTCGAGCACG
AACGGGGAACATAAATTTGTTCGAGTTATGGAGTATGGCTTATAAGTAAT
TGTTAACTAAGGGAACGAGAAAAACGTGCTAAGGAGATATTCGAGTTATG
GAGGTTTGATTTAAAGAAACTCTACTGTATTATAATAATTTTAAAAACTT
AAAAACCTGTGTGTTACCTTTCCACATTCAGTTATAGAAATGGACGTTTG
TGATGTCGGATGGGAGCCACTTTTACAGAAAATCTTTTTCAATATACATA
TTCTCTGTAAAAGCTCGGTTCAGACTTTTTTCATAAGATTATTCTATTGC
ATCAGTTCTAATCCAGAGTTTTCTTTTTTTCAGGTCACCGAGAAAAACAC
AAGCTATGAGGTAAGCTGGAGATTTAGTAACTTTTTTAATTATTCCTATG
TTTTATACAACATAGTGTGGTGTTAGTCCAGTATCATCTAGGTAATGAAT
GACTTTTTACAAACCTAGTTAAAAAGTTCTTATCTTCACAATAGTATATT
AATTAAAATTGGTTGTGATCACACACCCAATTGATAATGGACAAACCAGA
AAAAAAGGAGCTCAAAACTATTGGACCTTACTATATACACTTTGCACCAA
ATAAGCCTCTATTTTACTTAAAGATTTGTGTCCTAATGAATGGTGAGTGA
GCTGAGAATACCACTTGTACTTAAACCTCCGTGTATCTTTTGATTCGACC
TGTTATTCGAGTACTTCATTTAGGCTACTTATTAAGGTCCATGCTCACTT
TTGAATTTATAACCCATTATGAAAGGATGGTTTACACTACACGTAAATTA
ACCAAAATCTAAATAACAATATAGATAAAACTTAAACCACATCTGCAAAT
ACACAAAATACCTTGGTTGGGCTTTTAAAACTTTTAAACAATAATCGCAA
ATGTAATACATAATGATAATTTAAATACCGTAATGTAATGTAAAACAGGC
CCAACGAAGGTAGCATAAAAGAATAACAATAACGAATATATATAAAGCAC
ATATTTTCTTCCCCTCCTTTTTTGTAGCCCAACCAAGGTTCAACCGTCAG
GCGAAACACAATTTGGTTTCAACCAAAAAGAATCTGATTCTGGTCTACGT
AATAAATCACCGCCTAAACAACCAGTCTGCACTAATCAAAATGGTAGCAG
TAGTACCGCTATACCCGTTCGTTCACAAGAGGCGTCGCCAAGAATCGCTG
CTATAAAAGAAGAGCCTTCCACTGGTGTCGGGAGTAGCTATTACGAAGTG
GGTAGCGTACCTTACACCGGGAGTCAGGCTAACGGTTATCACTCCAACAC
GCCCGCGGGCTACTACGATTATTCGGATAGTTTTCGAAGCAACGATGGAG
CGTTCCCGTCCTCCTTTCACAACAGTAATTACCCTCCTTCACTGGGCTTG
TTGAAAACGGTTGACACAGGCGAACCGGCACCTTCACGAATGAATTTCGA
AACGGGTAGTTACGATACGTGTGCAGAATATTTGTCTCATTCCGCTCTTA
CACATCATTCACAGAACTTTTATCGAAGTAATTCTTCGAACAAGTCATCG
GCTTCCAGTCTACCTCACCACCATCATCATCCCAATAGCAACGGCTCTCA
CCATCCGACGCACGCGCATTCTAATAATCACGACACGCACGTGCAATCGA
GCAGCCACAATTCATTGCATCATGGCAGGTATAAAGACAATTACAACCCT
CACAACATGAGTATGGACTTAACTTTTGAGAATAGCATGTACGGGCTTGC
TGGTCCTGTCCCGACCTCAAATTACGAGTCAACTAACGGTGCTTCAAATG
TGGACCGAATGGATGACTTTGAACCGTTCGANACGGGCTTGCTGGTCCTG
TCCCGACCTCAAATTACGAGTCAACTAACGGTGCTTCAAATGTGGACCGA
ATGGATGACTTTGAACCGTTCGAATTTTTACAATGTGATAACAGTATGTC
GCCTAGGCAACCACCCGTTGCGACGTCAACACATCAAACGACCAGTCAGA
ATCAAGAACCTCGCTTTCGTATACCGTTACTGTAAGTGGTTGGCTTTAGG
TGTAAATCTTGTTGTCAGAAATCTAGTTTTCTAGTTCTTGGTAGTTGTAC
GTTTTTTTATGAAATAAAATGAACCGACCTCCTTTTGAAAGGCTCCAAAC
ATTATAGATACTATTTTTTTACTTTTTTTTTCACTGCATTATTTTGATTC
ACTCCCGTCCTGAGAAAATTAATGATATTCTTCATATGGAAAGTATAGTG
ATTTAGATTCCAGGTATACAACTGGGAGTAGTTTTTAATCAGAAAGACAC
TTCAAAGATTATTTATTTACATTTCATACTTAACTCTAAACTTTCTTACA
TTATTGTATCGCATTTCAAATGAAAAGTTTTGTGTTATACTCAAGCTTTT
TAGTGTTTGAGCTATGCATACTCAACATTTTTGCAACGCTGTTCATACAG
TAGGCTGCTCTTTGTATTCATTTGGGCAAGTTGATGAAGAGGGGTTCATT
TTTTGACTTCAATGATCACTGGAGAAAGGCTTCACTACGACTCTGATGGT
GATAGCCCAAAACAATTGATTGATTGCTTCGAGAGAAATTATTTTGGGAA
ACTGTAGATTGGGTTTTTCCCTAATCGAGTCTTCCTAAAGTTTCTATTCT
TGATAAGGGCCGATCACAATCTAAATATATAGCGGCCTTTCAAATTTCTT
AATTTTTTTTCAGTTCAGACAGATTGTAGGCAATTTTAATAAAGTAAATG
TGTTAAAATTTTTGTACGCTCTTTGAAAATGTTACCGTTTTTAACGAATA
TTATTAATTTATTGATATTTCAAAGATTTTTTTGCGTGTCAGTACTAGAG
TATTTAAAAGGAAACAGTTTAAATTATATTTAGTGTATAACGTTTATTCA
TTTGATAGTGTCTTAGTTCCTTTTTTCACTACGTTAATATTATATATTCT
CAATTATATTTTTTATTTATCACCCGGATTTGTCTAGATTTTTTATTATA
CTTAGGTCAACGCTCAAAAGCTACAAAACACGCCCACTCAAAAAGGGGAG
CTTCTCAGTGGACATATATATATATTCCAAAAGTTGAATTTTCGTGTGAT
ACTTGTGAGAACTTTTTCTATGAATGGGCTCTTCCAAAAAATGTTCGTAC
ATGAGGGGTGGAGGATATAGTGTCCGGGGGGGGGTAGTTAAACATCTGCA
ACTAGCTCTGTTTTGGGGTAATTTTGCTCTGTTTGAAGCTGATGCTTGTT
TGGTGGGGGGGGTTAGACCTGCTGTCTGGGGGGTCAAAAGTCACGATATG
TCCGGAGGTAAATTTCCAAAAAATGTTATATCCTCCACCCCCTCCCCCTC
CCCCATATTCAATTTCTTTCTGGAAAAGCCCAATGCGTTTATTAATTTGT
GAAACCTGGACACAAAGCTGAATGGGATTTTGTGAAGGTGATCAAAGATA
TTGGTTTTGTGTTGTTTGCATTATCCAGAGACAATCCCTATGCCATTTAG
GTCCTCTTGGCCGAAATCTCAGAGTAAAAACGGGGAGAAATCTGCAATAT
TTAATAGAGAAATAGTCTGTATGTTGAGGAGGTGTGACGTCCAGGCTGAT
CTAGAAAATAAAAAATCCAAGGTGGTCAGTAAAATGAGGTTGAAAATCCA
GGGGTTAGTAAAACAAAAATCTAGGTTGGTCCTAAAAATGAGAGAAAAAA
ATCCAAGGCGGTCCTGAAAAATTGGGAAAAAATCCAGGGGGTCACCTATT
TTGAAAAAGACCTCAACCTGCCTCAACATAGTGATACAATTTTTTTCTGG
AATAACCCATTGAATTCCCTTCTATACAAAAAAACAACAATCAATGAGTA
TTTCGAATAATGAATCTCTGGGAATGACTTTTAGTAGTTTTGTGTGTTTA
TTTTTAAAGAATTATTATTATTGATTTAGAGCAACGTATTGTTTATTGTA
TTTTGAACGTTTTACCTTAGACATACATTTTTATAGAAAAACTTTTAAAA
ACTTAAAGGTCATCTTCTTGTTCTTGAGCTTTTTAGCTCACACTTCACTG
ACGATAACGAATTAAATCCACAATGCAGAAATGCAAAAATAAATTTCATA
ATGTATGTATATATGGCACCCCTCTTTCACTGATATGGAAATATCCACAA
AACGTTTTACCCATTGTTTACTTTATGGGGAGAATTTTGCCCTTTTTTCG
ACAAAGTTTCTGCCAAGTAAGAAATTACACGAGAAATTCGAGAAAGTTTT
TTCCGCGACAAGTACACTTTTTTTGCTATTTTATACTCAAATTTCAGTTT
TTGTGCATTTTATCGCTTTTTTTGCCTGAAAAATTAAATAACATTCTAAA
ATTCGCAAGAGCAGCCACCGGCTAGGAAGTATGAAATATCTGTTCTTGAG
GTTCCTTTCTCCTGAAAAAAACTATCTGTTCTGTATCCTTGGCTCTCCTG
GATTGTATTTCTGTTCTGGGAAAAAATGGGACTCCTGGAAAATGTATATC
TGTTCTCTAGAAATATTATGCTCCTGGAAAAATATAACAGCTATTCTCTA
AGAAAGTTAAAATGTTCATAGAAAATGAGACCTTTTAAGAAAATTATGAA
GCTCCCTGCAAAAAAAAATCTGGCATCTGGTTGTGTTTTTCACAATTTAG
CTCCTGGATTTTTTTGAACAGATTGTCCGCTGGAAAATTGTATGTGTATG
TAAATTATTTTTCCCTAAAATGTGCTGCTAGGTGTTTTGAGGAAAGTCTC
TCCTAGATTTATCCATAAAATTTACTCTCCTGGGAAAAAAGAACAGATAT
TTAAAAAAAATCTACAGGCGGCTGCTCTTGAAGTTATATCCACTTAATTC
GTTCCAAAAGTAAAATTTGTGAAAGTAAAATTCGCTAAGTTTCGCGATTT
TGCAATCTAGCGAAAGTTTCTGCTCTCGAAAGTATTTGATACAGTGATGT
GTCCAAAAGGCTATCGTCTGGTTTATAGATCAAGAACAAGTACAATGGAG
TACACCCAAAAAGTTATCTTCTTTCTTGGATGCAGAGATGTGCTCAAAAG
GCTATCCAAAGTTTCTTTGATACAGGGGTGTGCACAAAATGCTATCCAAA
GTTTCTTTGATACAGTGGTGTGCACAAAATGCTATGCAAAGTTTCTTTGA
TACAGGGGTGTGCACAAAATGCTATCCAAAGTTTCTTTGATACAGGGGTG
TGCACAAAATGCTATCCAAAGTTTCTTTGATACAGTGTGCACAAAACATA
TTCAAGGTTGCTTTGATACAGAAGTGCACAAAATGCTATCTAAAGTTTCT
TGATACAAGGATGTGTTCAAAAGGTTATGAGCTCAAAACTCAAAACTTTT
ACATTATTTCGATCTAAACTTCGTTAGTAAAATCATTGAAATTGATAGGA
AATCAACCGTGTGTGCAATTTCAAAAACAATTTCATTTCGACAGAAACCG
AAACGAACCCTATGCATATAGTTTTTCGAACATTTCGCATTCCTTATTTT
TTGTTTGATGGAAGATGCTTTGAGGTTTCTTATAAAAACCTAACGTATCA
AATGGTTTGTGAGTACTTGACTTCAGAAGAGAGAAGAGCTGCGTTTAGAC
GGAGCATCGAATGTCAAGTTATAATTATATGAAGTTGTCGCTATGACAAC
TCACTGATGATTTACTTTATTTTATAAGAACTTTACAAATCAACTGAAGG
CTCTACAAAGATTACTTTGATTGTATTATGTTTTCTTGTGGCTATCTTTT
ATTCAACATTGGGCATTCTTCAGTCATTTTTGAGATCACATATAATTGTG
AAGAAATGTAGCAGCCATTTCACGCATCTTTTCACGATTGTCCTTATAAA
ATGTCCTTCAACATTAAGAAAATTGCTGTCATGATAATTTCTCTAAGTCT
GACGTCAACAATTGTAAAAAGTTTTTGTCATGATCTGCCTTCAATAAAAA
TGTCGATGTCATTGCAGTGTTTATCTTTTCCATTGTATTGTGACATTTTG
AACGCCATATCTCCATAAAAGGAGAAATGTCAAAACTTGAAATGATATCG
CTTGTGTGTACTGCACAAATTTAGCATGTTCGCATTCTTGTTTATTTGTT
TGTTTAATTCACGTCAGTCAACCTTCATCGTTTGATATAATTATGATGAA
ATCTCTCTAAGTAGCTTTAGCATAACGGTGGTTAATTTCTAAGCTTTTAA
GAATTTTGATTAAACCTTAAAACCTTCATAAACCTTAAAACACCCACTAC
TTGTCAAGAATTAGCCACCTACGCAGAGTTATATATTGGGCTATTAGGGA
AGGCGGGGTAAGGGTGTCAGTGTATTCAAAACCTTTCATCAGGTCAAACA
GTCTATGACTATATTTAGACCGTAATGGCAATAATGCTCAGTAACTAATA
TCTTTCTAACGACCTACCAAAACGTTAAACTTCTGTTCATGAGGATATCA
CAAATCCCTACAAAACAGTTATCTTAAAATATCTCTCCAATATCTTTCCA
ACGAGCTAACAAAATGTTCAAACAGATTGTTTCAAAACCTTACCACTTTA
TGCTTTATGTTACAAACCCCTACATTGTCAGTTACATACAAATACCTAAA
ATTAGAAATCCAGTAATATCTTTCCAACAAGTTTATCAAAGTGTTTCAGT
ACTTAGTACAAAGTATAAGTTCAAAATTCTCGCAAAATGTTGATTTCATT
GTTAACTCGTATTTTTTCTAGTTTTGAATTTTGAGAGAAACAATGGTGGA
ACAAAAACAATTTGGACGTGTGGAAAAAATGATCAAAATGAGGAAAAAGG
ATGTACGAAAGTAACTAGTCACTAGGCTATGTGGAAAATTTAGAAAAATG
GGATTTGTTAAGATGATAAAATGATTATTTGGAGTTGAATTTGTACTGTT
GATGAAGAATAATGGCGGATATTGTTAAGATTCCGATTTTGAGAAAGTCG
GTTTTCAAAATTCCGATACAAATCCGAATCGGGATTTCGGATTAATGCTA
CTTGAGATTTTATACAAAATGTAAACTTGCGAGAAAAGACAATTATTATT
TTTTGAATTATTATAGCTGAAATATTTATTTAAAGAATGTATTTTGAAGT
AAAAAAGGAATATTGTTTCTTGCAAATAAAACCAAACTATATTTGTTTGC
AAGCTGAATGGTAAATCACTCAGATTCAAATTTCTCTCTGATGGGAATTA
GTACTAAAAAATCTTTATTTTGGAATATGGATTTGTCACTTTTAGAATTG
ATGCTACAATAGATACTGTTTTCCGTTGTTTTGACTAAAATTTTTTTGGA
TCCATTTATTATCTTAGNGATACTGTTTTCCGTTGTTTTGACTAAAATTC
TTTTGGATCCATTTATTATCTTACCCTTAAATATTTTAATAGATTTTACA
CTTATAATACTCACATTTTGATTTTAATATCATCCCCTAGTTATCACAAT
TTTATTACCATTTATTTCGCTAATTTTTGGTAGAATAATCAATTTACAAG
AGTTTATTTTTCATCGATGTAATTTTTAGGACCATGTCATCCTTGAGTCG
CCACGAGATCGTAAAACAAAATTACGAAGCAGGGGAGGGTTTGCGAGGCT
GCAAAGTACCGGAATATTGGTAACTTTTCATGCCTGCGTTCCGGCCAAAT
ACCGGACAAAATGTTCCACCGAGTGCTAGAATTTAAGCCTTTCTAAACCA
GAATATCGGTTAATACCGGAATCTCAGTGACCCCTCTTCAAAGGCATGAA
AAAGTAGTGTTTAAAAAGCTGGAAGAAAGAATTTTTTTTATTCATCGGAC
ACTAAGGCAATGCCAATAGCATTTACAATAAACTGTATCAACAAAGCAAC
AGACATTTTGTCATGTAGATTTGTGTTGACTCTTTCGACCTTCAAACTGT
TTTATTTCAGTTATGATTCCAAACTACCGAACTATTTGACCCATGGAGGA
GTGTATTTTTCAACTTTTGCATGCATCAACCCCTTGGGAAGTGTACTTCA
CCGTTGTGCTTTTAATTTACCTGTGTATGATAGATTACAAGCTTTTTGCT
TGGATGAAACAAAGATTAAGTAGAGATATCAATTTTTAGCATTATTTACT
TAGGTTTTAGATTTTTTGCTTTAAATTTTTTCGTTTTTTTGTATGGTTTT
ATAAGAAAAAAGAAAGCCATCCCTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037770XLOC_037770Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060025-exon-scaffold_333-1575043694:175264..175403TCONS_00060025-exon-scaffold_333-1575043694:175264..175403Clytia hemisphaericaexon
TCONS_00060025-exon-scaffold_333-1575043694:174926..175003TCONS_00060025-exon-scaffold_333-1575043694:174926..175003Clytia hemisphaericaexon
TCONS_00060025-exon-scaffold_333-1575043694:174331..174438TCONS_00060025-exon-scaffold_333-1575043694:174331..174438Clytia hemisphaericaexon
TCONS_00060025-exon-scaffold_333-1575043694:174091..174182TCONS_00060025-exon-scaffold_333-1575043694:174091..174182Clytia hemisphaericaexon
TCONS_00060025-exon-scaffold_333-1575043694:173694..173720TCONS_00060025-exon-scaffold_333-1575043694:173694..173720Clytia hemisphaericaexon
TCONS_00060025-exon-scaffold_333-1575043694:165877..167332TCONS_00060025-exon-scaffold_333-1575043694:165877..167332Clytia hemisphaericaexon
TCONS_00060025-exon-scaffold_333-1510915933:175264..175403TCONS_00060025-exon-scaffold_333-1510915933:175264..175403Clytia hemisphaericaexon
TCONS_00060025-exon-scaffold_333-1510915933:174926..175003TCONS_00060025-exon-scaffold_333-1510915933:174926..175003Clytia hemisphaericaexon
TCONS_00060025-exon-scaffold_333-1510915933:174331..174438TCONS_00060025-exon-scaffold_333-1510915933:174331..174438Clytia hemisphaericaexon
TCONS_00060025-exon-scaffold_333-1510915933:174091..174182TCONS_00060025-exon-scaffold_333-1510915933:174091..174182Clytia hemisphaericaexon
TCONS_00060025-exon-scaffold_333-1510915933:173694..173720TCONS_00060025-exon-scaffold_333-1510915933:173694..173720Clytia hemisphaericaexon
TCONS_00060025-exon-scaffold_333-1510915933:165877..167332TCONS_00060025-exon-scaffold_333-1510915933:165877..167332Clytia hemisphaericaexon
TCONS_00060025-exon-scaffold_333-1491911889:175264..175403TCONS_00060025-exon-scaffold_333-1491911889:175264..175403Clytia hemisphaericaexon
TCONS_00060025-exon-scaffold_333-1491911889:174926..175003TCONS_00060025-exon-scaffold_333-1491911889:174926..175003Clytia hemisphaericaexon
TCONS_00060025-exon-scaffold_333-1491911889:174331..174438TCONS_00060025-exon-scaffold_333-1491911889:174331..174438Clytia hemisphaericaexon
TCONS_00060025-exon-scaffold_333-1491911889:174091..174182TCONS_00060025-exon-scaffold_333-1491911889:174091..174182Clytia hemisphaericaexon
TCONS_00060025-exon-scaffold_333-1491911889:173694..173720TCONS_00060025-exon-scaffold_333-1491911889:173694..173720Clytia hemisphaericaexon
TCONS_00060025-exon-scaffold_333-1491911889:165877..167332TCONS_00060025-exon-scaffold_333-1491911889:165877..167332Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_333supercontigscaffold_333:165877..175403 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.4496	3.50088	1.61626	1.06949	18.7919	12.4106	15.0485	15.3355	10.6055	10.0076	9.90956	6.79305	9.50695	8.68415	8.3643	7.61747	14.0296	14.3929	7.58825	9.18272	15.3575	16.192	13.7559	14.4946	13.8175	14.0145	21.4501	16.8989	26.0906	22.0585
Blast
[Close]
BLAST of TCONS_00060025 vs. Swiss-Prot (Human)
Match: KS6B1 (Ribosomal protein S6 kinase beta-1 OS=Homo sapiens GN=RPS6KB1 PE=1 SV=2)

HSP 1 Score: 127.102 bits (318), Expect = 5.709e-31
Identity = 63/130 (48.46%), Postives = 87/130 (66.92%), Query Frame = 3 
Query:   42 YVQNDWKKFTL*LLKRHPDSRLGGGTDDADPLKKHAFFRHIDWKDLYDRNVEPPFKPAVSCEEDVSQFDQRFTKETPVDSPCDKMLSDSVDKIFQGFTYVAPSIFENWGKGGRQSFSELHLSRSLKSPRK 431
            Y+  + +     LLKR+  SRLG G  DA  ++ H FFRHI+W++L  R VEPPFKP +  EEDVSQFD +FT++TPVDSP D  LS+S +++F GFTYVAPS+ E+     ++ FS       ++SPR+
Sbjct:  315 YLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQAHPFFRHINWEELLARKVEPPFKPLLQSEEDVSQFDSKFTRQTPVDSPDDSTLSESANQVFLGFTYVAPSVLESV----KEKFS---FEPKIRSPRR 437
The following BLAST results are available for this feature:
BLAST of TCONS_00060025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
KS6B15.709e-3148.46Ribosomal protein S6 kinase beta-1 OS=Homo sapiens... [more]
back to top