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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00060024 ID=TCONS_00060024|Name=TCONS_00060024|organism=Clytia hemisphaerica|type=transcript|length=2805bpRun BLAST on NCBI protein sequence of TCONS_00060024-protein >TCONS_00060024-protein ID=TCONS_00060024-protein|Name=TCONS_00060024-protein|organism=Clytia hemisphaerica|type=polypeptide|length=437bp MDDLDALLADLQNSSRSTGKSKPADDFPPPPSGNLTNGTVGKQEPGSTVQRun BLAST on NCBI transcript from alignment at scaffold_333:145020..163937- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00060024 ID=TCONS_00060024|Name=TCONS_00060024|organism=Clytia hemisphaerica|type=transcript|length=18918bp|location=Sequence derived from alignment at scaffold_333:145020..163937- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_333:145020..163937- >TCONS_00060024 ID=TCONS_00060024|Name=TCONS_00060024|organism=Clytia hemisphaerica|type=CDS|length=14454bp|location=Sequence derived from alignment at scaffold_333:145020..163937- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00060024 vs. Swiss-Prot (Human)
Match: PAXI (Paxillin OS=Homo sapiens GN=PXN PE=1 SV=3) HSP 1 Score: 468.003 bits (1203), Expect = 5.190e-153 Identity = 225/403 (55.83%), Postives = 272/403 (67.49%), Query Frame = 2
Query: 302 KQEPGSTVQVSVTAVEALLNELDTQVSNSKSSAQTNGPPMPEPQHANATR-----TASTATKELDDLMASLSDFKVNTGEQPVNNR---TPSVPEADETDAPPEKPAITSTTHTYHVSSNDDYAKVEKRXXXXXXXXXXXXXXXXXLDSMLGSLQTTMSKQGVATVTKGTCAGCNKPIIGQVCTALGKTWHPEHFSCCICDMELGTKTFFERDGKPYCENDYHEIFAPKCFACNGPILDSCVTSMDRTWHPEHFVCQECGRPFGDSGFHEKDGKAYCREDYFRLFAPKCSGCNKAIIENYISALNGHWHPHCFACMECHQPFQNGSFFEHEGMPYCEMHYHSRRGSLCYSCQKPITGRCITAMHRKFHPEHFICAFCLKQLNKGTFKEQNDKPYCHGCFVKLF 1486
K+ G ++ +VE+LL+EL++ V + + N M PQ +T+ +AS+AT+ELD+LMASLSDFK+ EQ + P +P D+ + + + S LDSMLGSLQ+ ++K GVATV KG C C KPI GQV TA+GKTWHPEHF C C E+G++ FFERDG+PYCE DYH +F+P+C+ CNGPILD VT++DRTWHPEHF C +CG FG GFHEKDGKAYCR+DYF +FAPKC GC +AI+ENYISALN WHP CF C EC PF NGSFFEH+G PYCE+HYH RRGSLC CQKPITGRCITAM +KFHPEHF+CAFCLKQLNKGTFKEQNDKPYC CF+KLF
Sbjct: 203 KRNGGRGLEDVRPSVESLLDELESSVPSPVPAITVNQGEMSSPQRVTSTQQQTRISASSATRELDELMASLSDFKIQGLEQRADGERCWAAGWPRDGGRSSP---------------GGQDEGGFMAQGKTGSSSPPGGPPKPGSQLDSMLGSLQSDLNKLGVATVAKGVCGACKKPIAGQVVTAMGKTWHPEHFVCTHCQEEIGSRNFFERDGQPYCEKDYHNLFSPRCYYCNGPILDKVVTALDRTWHPEHFFCAQCGAFFGPEGFHEKDGKAYCRKDYFDMFAPKCGGCARAILENYISALNTLWHPECFVCRECFTPFVNGSFFEHDGQPYCEVHYHERRGSLCSGCQKPITGRCITAMAKKFHPEHFVCAFCLKQLNKGTFKEQNDKPYCQNCFLKLF 590 The following BLAST results are available for this feature:
BLAST of TCONS_00060024 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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