TCONS_00060008 (transcript) - C. hemisphaerica

Overview
NameTCONS_00060008
Unique NameTCONS_00060008
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2032

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00060008 ID=TCONS_00060008|Name=TCONS_00060008|organism=Clytia hemisphaerica|type=transcript|length=2032bp
CTGCTGGCCATCAGGAGATGATTGGGAAGGCTTGAATAAAACATTGAATG
GAAATTTGAAGGATCCTGTTAATCCGATATCGGCATGTTTCAAACCAGCT
GGAGAGACTGATGCAATGAGCAAGGAGCGAGAAGCAGAATGTTCACAGCA
ATTACAAGACTTCAAATCAGATCCGTACTGGGTGCGAAAACATTCCGGAC
TCACACAATCAGCAGGTCAAGTAGGGGCATGGAATTCAACGGAAAGTGTC
AAGGTAGTAGAAGCCAGGACAGTCGCACACATCAAAACCGCCGTCGACTT
TGCACGCAAACACAATATGCGTATAGTTGTTAAAGGCACAGGTCACGAAT
ACAACGGCCGTTCCAATGCACCTGATTCACTCCTTATATGGACATATCAC
ATGAGCGAGATTATATTCCACGATCAACTCTCATGGGATTGTCCTGCATG
CAAAGACGAGAAGGTTACCAGTGTCACTGTAGGCGCTGGTGTCGTTTGGG
GAGATATCTATGCTGCGGCAAACAGGAAAAACTTGTACGTTCAAGGAGGA
ACATGCCCAACAGTCGGTGTCGTTGGATTCACCCTGGGAGGAGGAATTGG
TATCTGGTCCAGAAAATATGGTCTTGGTTCCACCAACTTATTACAAGCGA
CTGTTGTGACGGCTGACGGCGACATTAAACGAGCGTCCAAAGTCGAGAAT
CCTGAATTATACTATGCTCTTCGTGGAGGTGGTTTTGGATTTGGCATTGT
TGCTGACATGACCATTCGAACCCACCCATCACCTAAACAAGTCATCCTTG
TGAAAGGCGACATTAGTACCTATTGTGAGAGCTCATTCAAAAAACTACTC
GCACACTTTTTCACAATCTACAAAGAAGATTTGGTTGGACCACACTGGGG
TGATTATGCGAGAGTGAAAGTCCCCGGCAAACATTCAGGAGAGAAATACA
AATGGGTATTGTCAATTAACATGAAAGCTGTGGACATTTCATTAGAAACA
GCGAAAAGAGAGTGGGCGTCTTTCATTCGGTTCGTCAGTATCGGAGATCT
CAGCCACATGTACAAATTCGAAAAATCTAAATATGATGTGTTAAAGTTCT
TGACTATGCCTGGAAATACATTCTGGAGCCGTGCCAATCCTGGTACAGTA
CCAACACTGCAAGATGAATTTGAGCCACATGCAGCTTACAACTGGGGTAC
GGAATTGGACAAGGGATCTGAACAGTTCAAATACTGGCTTCAATTCGGTA
CACGAAACTTGAGAAATGACCAAATATTGACCGACCCAACAACAGGTGCA
GACAAACTCATAACATTCTTTAAAGAGCTCGGCGATCTACCCAGCACAGC
ACGCCTTAGCATGGTGTTTAAGGGTGAGGACAACATATTCAACTGTGCAA
GCAACGAACTGGCAAACACTCCAATGGCCCGAATGAACGAAAGCTTCGCA
ATGATTTGGGCGTGGGTCGGAGTCCGCAGATTTCATCCAGATATACCCAT
atcattacagaaagattctaAAAATACCACATATACAGAAATCAAGGATG
AATTCTGTAAAGGTAACAGTCTCGAAGCCTGTCCTGCAtcaaaaaaagta
caaaaagcaTTTCAGAAATTTAGAGAAGCAACACCAGGAGCGGGGTCTTA
CTTCAACATTGCCGATTATTTTGAGAAGGATTTTAAAGAAGCTTTCTGGG
GAAAAGAGATTTATAAGAAGTTGAGGAAATTAAAGGATAAGTATGATCCA
CATGGATTGTTCTACTGTCACCATTGCGTTGGATCAGAAGATTGGGAATA
TAAGAGCGAAAAGCTATGCAAAAAAGGACCAGCAAATGAAGAAACGGCCC
AAAAAGCACCAACGCCAAACAATGAAGAACTCTAAGAAGAATTCTTTTTT
CGAATtatatcatgaatttttcaaTATCGCACTAGACGCGATTTTACTGA
CAACGTGGGAGGACGaataattttcttcattttccagaGTGCATTATTCC
GACTCTCGTTATCGTATTACTTAGTACATTGG
Run BLAST on NCBI

protein sequence of TCONS_00060008-protein

>TCONS_00060008-protein ID=TCONS_00060008-protein|Name=TCONS_00060008-protein|organism=Clytia hemisphaerica|type=polypeptide|length=627bp
CWPSGDDWEGLNKTLNGNLKDPVNPISACFKPAGETDAMSKEREAECSQQ
LQDFKSDPYWVRKHSGLTQSAGQVGAWNSTESVKVVEARTVAHIKTAVDF
ARKHNMRIVVKGTGHEYNGRSNAPDSLLIWTYHMSEIIFHDQLSWDCPAC
KDEKVTSVTVGAGVVWGDIYAAANRKNLYVQGGTCPTVGVVGFTLGGGIG
IWSRKYGLGSTNLLQATVVTADGDIKRASKVENPELYYALRGGGFGFGIV
ADMTIRTHPSPKQVILVKGDISTYCESSFKKLLAHFFTIYKEDLVGPHWG
DYARVKVPGKHSGEKYKWVLSINMKAVDISLETAKREWASFIRFVSIGDL
SHMYKFEKSKYDVLKFLTMPGNTFWSRANPGTVPTLQDEFEPHAAYNWGT
ELDKGSEQFKYWLQFGTRNLRNDQILTDPTTGADKLITFFKELGDLPSTA
RLSMVFKGEDNIFNCASNELANTPMARMNESFAMIWAWVGVRRFHPDIPI
SLQKDSKNTTYTEIKDEFCKGNSLEACPASKKVQKAFQKFREATPGAGSY
FNIADYFEKDFKEAFWGKEIYKKLRKLKDKYDPHGLFYCHHCVGSEDWEY
KSEKLCKKGPANEETAQKAPTPNNEEL
Run BLAST on NCBI

transcript from alignment at scaffold_333:179466..184017+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00060008 ID=TCONS_00060008|Name=TCONS_00060008|organism=Clytia hemisphaerica|type=transcript|length=4552bp|location=Sequence derived from alignment at scaffold_333:179466..184017+ (Clytia hemisphaerica)
CTGCTGGCCATCAGGAGATGATTGGGAAGGCTTGAATAAAACATTGAATG
GAAATTTGAAGGATCCTGTTAATCCGATATCGGCATGTTTCAAACCAGCT
GGAGAGACTGATGCAATGAGCAAGGAGCGAGAAGCAGAATGTTCACAGCA
ATTACAAGACTTCAAATCAGATCCGTACTGGGTGCGAAAACATTCCGGAC
TCACACAATCAGCAGGTATGTATAGGTTTAAATATAGACATTAGTAGGTT
TAATTAAGTCTGGTTGATTTTCAGGTTTTCATTGATTTTGCCCAATTTCC
CCGATAAGGCCTTTTTGACAGTTTAATCATTATGTATATATTTGAAGAAC
AAATGATCGAAAGTGgcaaaaaatttctaaaagtagacaaaaatttaaaa
atcttccaaTTTACACCTTTCAAATTGTCCAGAATAACCAAAAGTCGACt
ctgtcagatacacatcttgaaaattgtggaatttggagcctgtcagatat
cttcagagccaaaaaaatgaccctgaccagcggcatggcttttattctta
aaataaaatttatattctttttaaatcaaaaataatgtaaaaaataGATA
TCCTCATTTCAGATTTATTTCTTCgaaaaaagagaatttgacTATTCTAT
ATCCCTGTAACATCTAAGATCTGATTTTATATTTTAGGTCAAGTAGGGGC
ATGGAATTCAACGGAAAGTGTCAAGGTAGTAGAAGCCAGGACAGTCGCAC
ACATCAAAACCGCCGTCGACTTTGCACGCAAACACAATATGCGTATAGTT
GTTAAAGGCACAGGTAGGTATCTCACATCTTTTTACCAAAGAAATTGATT
CGTACTTTATTCAAGGAAAtatatgtttttgaaatttatatatgTTTATT
GATTGATAAAATTGCGTGATGTCGCttagaaaaacttaaaaaagcctcCA
GAAACTTAAACTTTGATCACTTCTATTGGATCGTCAATCTTTTTTACTCA
GAGAAATTATTACGTCGAGGGCCAAAAAGATCGTCAAACTATCATACAAA
ATATCTTTCTGAATCTTTCAGGTCACGAATACAACGGCCGTTCCAATGCA
CCTGATTCACTCCTTATATGGACATATCACATGAGCGAGATTATATTCCA
CGATCAACTCTCATGGGATTGTCCTGCATGCAAAGACGAGAAGGTTACCA
GTGTCACTGTAGGCGCTGGTGTCGTTTGGGGAGATATCTATGCTGCGGCA
AACAGGAAAAACTTGGTAAGattattacacgcttttttataagaacaaac
tatataagaatctTTTAAGGCTTGGataaccaaaatgttaagaacaaatt
aaaaacattttaaggctttgtggactcaaaaacaccttttttaggaaaat
gggtaaaaatggtccacaagatggtgaaaataagaacatttcaagaacat
ttttaggcttgaaacctaaaaagttaagaacatcccaaggcttcaaaaat
tttggatgttcttataaatgaaaacgtgtacacgcttttttaaaagaaag
aagCACAAGAGGCTCAATTATAAAAGCAATCCCAACCTCACCTTTCGAAA
TGGCTAAGATAATACTGACTTTAAGTCCTTTTCGAATCAATAAGTGAATA
AACGAAGCAAAATCCGGAAATTATGACCGAACCGCCACAGCCAAAATCCa
taggttcttataaaaaaacgtatattgCCGTACTTTAGTACGTTCAAGGA
GGAACATGCCCAACAGTCGGTGTCGTTGGATTCACCCTGGGAGGAGGAAT
TGGTATCTGGTCCAGAAAATATGGTCTTGGTTCCACCAACTTATTACAAG
CGACTGTTGTGACGGCTGACGGCGACATTAAACGAGCGTCCAAAGTCGAG
AATCCTGAATTATACTATGCTCTTCGTGGAGGTTAGTATTTTTTTAGCAT
GTTTATCTTATTTTTTGTTCGTAGGTTTTTTGCTTTTAAacactcttttt
tttctcagtttCTAAAATCAGTATTATCTTACTTTATATAAATCTAAGCT
CTTGTGCCGTGTCAAAAGTTAGAATTTAATTTCCCATGTACGAAGATTTC
GCCTCTAGCTTTATTTCATACTGATTGTCAGATTGTTATTATATTTAACT
GAAGAATCTTTCTGTACATACTCCATTTGTGGGTAAAGAAGAGGAAGTCC
GATACCAACTTCTGCTTTCAACGACAAAAATTTACTTCTACTTCTGTATG
TACTTTACGGACCAGAATAGATAGAAAGTctcagaagaaaaaaaagaaga
taaagtGATCGAAGACTTTTAGTGGGTCACGGGATTTGCAGCCAGTTGGT
TCCGCTAAATCTGATCTGATCTAAGCAGGAAGGGAGAGGGCGAATTTGTC
TTGAACGCCCTCACGACGCCCTCTTGGTTATTGCTCTTTATTTAGCTTAT
GCTTTATATAGACCCTAGAAGCAGTTTCTCAATCCCgccaatcaaaatat
ttttaacggagtttttttttaaagtgataGCTACATCGATAGTGTAAGAT
CTACTTTAACTTGCATACTAGCAATGTAGCGTagtttgtcgttaggcaaa
gtgttaacactacaatggcttctttgtgggcaccactttcaaaaaaactt
cgatcaaagatggcgaaaATAGCTCGGTCCAGTGTtaataaaggtcagtg
cttacaattaatgttttctttttctgatcAAATCAGGTGGTTTTGGATTT
GGCATTGTTGCTGACATGACCATTCGAACCCACCCATCACCTAAACAAGT
CATCCTTGTGAAAGGCGACATTAGTACCTATTGTGAGAGCTCATTCAAAA
AACTACTCGCACACTTTTTCACAATCTACAAAGAAGATTTGGTTGGACCA
CACTGGGGTGATTATGCGAGAGTGAAAGTCCCCGGCAAACATTCAGGAGA
GAAATACAAATGGGTATTGTCAATTAACATGAAAGCTGTGGACATTTCAT
TAGAAACAGCGAAAAGAGAGTGGGCGTCTTTCATTCGGTTCGTCAGTATC
GGAGATCTCAGCCACATGTACAAATTCGAAAAATCTAAATATGATGTGTT
AAAGTTCTTGACTATGCCTGGAAATACATTCTGGAGCCGTGCCAATCCTG
GTACAGTACCAACACTGCAAGATGAATTTGAGCCACATGCAGCTTACAAC
TGGGGTACGGAATTGGACAAGGGATCTGAACAGTTCAAATACTGGCTTCA
ATTCGGTACACGAAACTTGAGAAATGACCAAATATTGACCGACCCAACAA
CAGGTGCAGACAAACTCATAACATTCTTTAAAGAGCTCGGCGATCTACCC
AGCACAGCACGCCTTAGCATGGTGTTTAAGGGTGAGGACAACATATTCAA
CTGTGCAAGCAACGAACTGGCAAACACTCCAATGGCCCGAATGAACGAAA
GCTTCGCAATGATTTGGGCGTGGGTCGGAGTCCGCAGATTTCATCCAGAT
ATACCCATatcattacagaaagattctaAAAATACCACATATACAGAAAT
CAAGGATGAATTCTGTAAAGGTAACAGTCTCGAAGCCTGTCCTGCAtcaa
aaaaagtacaaaaagcaTTTCAGAAATTTAGAGAAGCAACACCAGGAGCG
GGGTCTTACTTCAACATTGCCGATTATTTTGAGAAGGATTTTAAAGAAGC
TTTCTGGGGAAAAGAGGTGAGTTCATTGTTAACAGATATCTTATCTAAAT
ATCTAGATGGAGCTAATCTTATCTTTGTCAGGCTATAGGTCATAAAGCAA
TATTGAATACCAAAAGATGTCACGCTAGACCACAGTAAATCTTCGCAAAA
CAAGTCAACTCAAAATATTGGTATATGATAATAGGAACATTGTCGAATTT
AGTTTAGATGGTTAAACGTTCCCGGTGGTGTCGTTTCAGTGTGATTTCCC
ACACTGTGACCTGGTTACTACCAAAAAAttttaaccggttactttttcgt
agcggctttttgcgcaatgcaaaaGGAAAAGGAAACGGTTaataaataca
ataatgaccggttctttcgggctgtactgtgaaatattgccctcggtcaa
cgcaacagcCTCGCAAGCTCGgccgttacttgacctcgggcaatatttct
cggtaaagccctcactaaccggtcattgtactaataataaaaaattgttt
ctaTTTTGTATGTTTTTTCTTTACACAGATTTATAAGAAGTTGAGGAAAT
TAAAGGATAAGTATGATCCACATGGATTGTTCTACTGTCACCATTGCGTT
GGATCAGAAGATTGGGAATATAAGAGCGAAAAGCTATGCAAAAAAGGACC
AGCAAATGAAGAAACGGCCCAAAAAGCACCAACGCCAAACAATGAAGAAC
TCTAAGAAGAATTCTTTTTTCGAATtatatcatgaatttttcaaTATCGC
ACTAGACGCGATTTTACTGACAACGTGGGAGGACGaataattttcttcat
tttccagaGTGCATTATTCCGACTCTCGTTATCGTATTACTTAGTACATT
GG

Coding sequence (CDS) from alignment at scaffold_333:179466..184017+

>TCONS_00060008 ID=TCONS_00060008|Name=TCONS_00060008|organism=Clytia hemisphaerica|type=CDS|length=11304bp|location=Sequence derived from alignment at scaffold_333:179466..184017+ (Clytia hemisphaerica)
TGCTGGCCATCAGGAGATGATTGGGAAGGCTTGAATAAAACATTGAATGG
AAATTTGAAGGATCCTGTTAATCCGATATCGGCATGTTTCAAACCAGCTG
GAGAGACTGATGCAATGAGCAAGGAGCGAGAAGCAGAATGTTCACAGCAA
TTACAAGACTTCAAATCAGATCCGTACTGGGTGCGAAAACATTCCGGACT
CACACAATCAGCAGGTCAAGTAGGGGCATGGAATTCAACGGAAAGTGTCA
AGGTAGTAGAAGCCAGGACAGTCGCACACATCAAAACCGCCGTCGACTTT
GCACGCAAACACAATATGCGTATAGTTGTTAAAGGCACAGGTCACGAATA
CAACGGCCGTTCCAATGCACCTGATTCACTCCTTATATGGACATATCACA
TGAGCGAGATTATATTCCACGATCAACTCTCATGGGATTGTCCTGCATGC
AAAGACGAGAAGGTTACCAGTGTCACTGTAGGCGCTGGTGTCGTTTGGGG
AGATATCTATGCTGCGGCAAACAGGAAAAACTTGTACGTTCAAGGAGGAA
CATGCCCAACAGTCGGTGTCGTTGGATTCACCCTGGGAGGAGGAATTGGT
ATCTGGTCCAGAAAATATGGTCTTGGTTCCACCAACTTATTACAAGCGAC
TGTTGTGACGGCTGACGGCGACATTAAACGAGCGTCCAAAGTCGAGAATC
CTGAATTATACTATGCTCTTCGTGGAGGTGGTTTTGGATTTGGCATTGTT
GCTGACATGACCATTCGAACCCACCCATCACCTAAACAAGTCATCCTTGT
GAAAGGCGACATTAGTACCTATTGTGAGAGCTCATTCAAAAAACTACTCG
CACACTTTTTCACAATCTACAAAGAAGATTTGGTTGGACCACACTGGGGT
GATTATGCGAGAGTGAAAGTCCCCGGCAAACATTCAGGAGAGAAATACAA
ATGGGTATTGTCAATTAACATGAAAGCTGTGGACATTTCATTAGAAACAG
CGAAAAGAGAGTGGGCGTCTTTCATTCGGTTCGTCAGTATCGGAGATCTC
AGCCACATGTACAAATTCGAAAAATCTAAATATGATGTGTTAAAGTTCTT
GACTATGCCTGGAAATACATTCTGGAGCCGTGCCAATCCTGGTACAGTAC
CAACACTGCAAGATGAATTTGAGCCACATGCAGCTTACAACTGGGGTACG
GAATTGGACAAGGGATCTGAACAGTTCAAATACTGGCTTCAATTCGGTAC
ACGAAACTTGAGAAATGACCAAATATTGACCGACCCAACAACAGGTGCAG
ACAAACTCATAACATTCTTTAAAGAGCTCGGCGATCTACCCAGCACAGCA
CGCCTTAGCATGGTGTTTAAGGGTGAGGACAACATATTCAACTGTGCAAG
CAACGAACTGGCAAACACTCCAATGGCCCGAATGAACGAAAGCTTCGCAA
TGATTTGGGCGTGGGTCGGAGTCCGCAGATTTCATCCAGATATACCCATa
tcattacagaaagattctaAAAATACCACATATACAGAAATCAAGGATGA
ATTCTGTAAAGGTAACAGTCTCGAAGCCTGTCCTGCAtcaaaaaaagtac
aaaaagcaTTTCAGAAATTTAGAGAAGCAACACCAGGAGCGGGGTCTTAC
TTCAACATTGCCGATTATTTTGAGAAGGATTTTAAAGAAGCTTTCTGGGG
AAAAGAGATTTATAAGAAGTTGAGGAAATTAAAGGATAAGTATGATCCAC
ATGGATTGTTCTACTGTCACCATTGCGTTGGATCAGAAGATTGGGAATAT
AAGAGCGAAAAGCTATGCAAAAAAGGACCAGCAAATGAAGAAACGGCCCA
AAAAGCACCAACGCCAAACAATGAAGAACTCTAATGCTGGCCATCAGGAG
ATGATTGGGAAGGCTTGAATAAAACATTGAATGGAAATTTGAAGGATCCT
GTTAATCCGATATCGGCATGTTTCAAACCAGCTGGAGAGACTGATGCAAT
GAGCAAGGAGCGAGAAGCAGAATGTTCACAGCAATTACAAGACTTCAAAT
CAGATCCGTACTGGGTGCGAAAACATTCCGGACTCACACAATCAGCAGGT
CAAGTAGGGGCATGGAATTCAACGGAAAGTGTCAAGGTAGTAGAAGCCAG
GACAGTCGCACACATCAAAACCGCCGTCGACTTTGCACGCAAACACAATA
TGCGTATAGTTGTTAAAGGCACAGGTCACGAATACAACGGCCGTTCCAAT
GCACCTGATTCACTCCTTATATGGACATATCACATGAGCGAGATTATATT
CCACGATCAACTCTCATGGGATTGTCCTGCATGCAAAGACGAGAAGGTTA
CCAGTGTCACTGTAGGCGCTGGTGTCGTTTGGGGAGATATCTATGCTGCG
GCAAACAGGAAAAACTTGTACGTTCAAGGAGGAACATGCCCAACAGTCGG
TGTCGTTGGATTCACCCTGGGAGGAGGAATTGGTATCTGGTCCAGAAAAT
ATGGTCTTGGTTCCACCAACTTATTACAAGCGACTGTTGTGACGGCTGAC
GGCGACATTAAACGAGCGTCCAAAGTCGAGAATCCTGAATTATACTATGC
TCTTCGTGGAGGTGGTTTTGGATTTGGCATTGTTGCTGACATGACCATTC
GAACCCACCCATCACCTAAACAAGTCATCCTTGTGAAAGGCGACATTAGT
ACCTATTGTGAGAGCTCATTCAAAAAACTACTCGCACACTTTTTCACAAT
CTACAAAGAAGATTTGGTTGGACCACACTGGGGTGATTATGCGAGAGTGA
AAGTCCCCGGCAAACATTCAGGAGAGAAATACAAATGGGTATTGTCAATT
AACATGAAAGCTGTGGACATTTCATTAGAAACAGCGAAAAGAGAGTGGGC
GTCTTTCATTCGGTTCGTCAGTATCGGAGATCTCAGCCACATGTACAAAT
TCGAAAAATCTAAATATGATGTGTTAAAGTTCTTGACTATGCCTGGAAAT
ACATTCTGGAGCCGTGCCAATCCTGGTACAGTACCAACACTGCAAGATGA
ATTTGAGCCACATGCAGCTTACAACTGGGGTACGGAATTGGACAAGGGAT
CTGAACAGTTCAAATACTGGCTTCAATTCGGTACACGAAACTTGAGAAAT
GACCAAATATTGACCGACCCAACAACAGGTGCAGACAAACTCATAACATT
CTTTAAAGAGCTCGGCGATCTACCCAGCACAGCACGCCTTAGCATGGTGT
TTAAGGGTGAGGACAACATATTCAACTGTGCAAGCAACGAACTGGCAAAC
ACTCCAATGGCCCGAATGAACGAAAGCTTCGCAATGATTTGGGCGTGGGT
CGGAGTCCGCAGATTTCATCCAGATATACCCATatcattacagaaagatt
ctaAAAATACCACATATACAGAAATCAAGGATGAATTCTGTAAAGGTAAC
AGTCTCGAAGCCTGTCCTGCAtcaaaaaaagtacaaaaagcaTTTCAGAA
ATTTAGAGAAGCAACACCAGGAGCGGGGTCTTACTTCAACATTGCCGATT
ATTTTGAGAAGGATTTTAAAGAAGCTTTCTGGGGAAAAGAGATTTATAAG
AAGTTGAGGAAATTAAAGGATAAGTATGATCCACATGGATTGTTCTACTG
TCACCATTGCGTTGGATCAGAAGATTGGGAATATAAGAGCGAAAAGCTAT
GCAAAAAAGGACCAGCAAATGAAGAAACGGCCCAAAAAGCACCAACGCCA
AACAATGAAGAACTCTAATGCTGGCCATCAGGAGATGATTGGGAAGGCTT
GAATAAAACATTGAATGGAAATTTGAAGGATCCTGTTAATCCGATATCGG
CATGTTTCAAACCAGCTGGAGAGACTGATGCAATGAGCAAGGAGCGAGAA
GCAGAATGTTCACAGCAATTACAAGACTTCAAATCAGATCCGTACTGGGT
GCGAAAACATTCCGGACTCACACAATCAGCAGGTCAAGTAGGGGCATGGA
ATTCAACGGAAAGTGTCAAGGTAGTAGAAGCCAGGACAGTCGCACACATC
AAAACCGCCGTCGACTTTGCACGCAAACACAATATGCGTATAGTTGTTAA
AGGCACAGGTCACGAATACAACGGCCGTTCCAATGCACCTGATTCACTCC
TTATATGGACATATCACATGAGCGAGATTATATTCCACGATCAACTCTCA
TGGGATTGTCCTGCATGCAAAGACGAGAAGGTTACCAGTGTCACTGTAGG
CGCTGGTGTCGTTTGGGGAGATATCTATGCTGCGGCAAACAGGAAAAACT
TGTACGTTCAAGGAGGAACATGCCCAACAGTCGGTGTCGTTGGATTCACC
CTGGGAGGAGGAATTGGTATCTGGTCCAGAAAATATGGTCTTGGTTCCAC
CAACTTATTACAAGCGACTGTTGTGACGGCTGACGGCGACATTAAACGAG
CGTCCAAAGTCGAGAATCCTGAATTATACTATGCTCTTCGTGGAGGTGGT
TTTGGATTTGGCATTGTTGCTGACATGACCATTCGAACCCACCCATCACC
TAAACAAGTCATCCTTGTGAAAGGCGACATTAGTACCTATTGTGAGAGCT
CATTCAAAAAACTACTCGCACACTTTTTCACAATCTACAAAGAAGATTTG
GTTGGACCACACTGGGGTGATTATGCGAGAGTGAAAGTCCCCGGCAAACA
TTCAGGAGAGAAATACAAATGGGTATTGTCAATTAACATGAAAGCTGTGG
ACATTTCATTAGAAACAGCGAAAAGAGAGTGGGCGTCTTTCATTCGGTTC
GTCAGTATCGGAGATCTCAGCCACATGTACAAATTCGAAAAATCTAAATA
TGATGTGTTAAAGTTCTTGACTATGCCTGGAAATACATTCTGGAGCCGTG
CCAATCCTGGTACAGTACCAACACTGCAAGATGAATTTGAGCCACATGCA
GCTTACAACTGGGGTACGGAATTGGACAAGGGATCTGAACAGTTCAAATA
CTGGCTTCAATTCGGTACACGAAACTTGAGAAATGACCAAATATTGACCG
ACCCAACAACAGGTGCAGACAAACTCATAACATTCTTTAAAGAGCTCGGC
GATCTACCCAGCACAGCACGCCTTAGCATGGTGTTTAAGGGTGAGGACAA
CATATTCAACTGTGCAAGCAACGAACTGGCAAACACTCCAATGGCCCGAA
TGAACGAAAGCTTCGCAATGATTTGGGCGTGGGTCGGAGTCCGCAGATTT
CATCCAGATATACCCATatcattacagaaagattctaAAAATACCACATA
TACAGAAATCAAGGATGAATTCTGTAAAGGTAACAGTCTCGAAGCCTGTC
CTGCAtcaaaaaaagtacaaaaagcaTTTCAGAAATTTAGAGAAGCAACA
CCAGGAGCGGGGTCTTACTTCAACATTGCCGATTATTTTGAGAAGGATTT
TAAAGAAGCTTTCTGGGGAAAAGAGATTTATAAGAAGTTGAGGAAATTAA
AGGATAAGTATGATCCACATGGATTGTTCTACTGTCACCATTGCGTTGGA
TCAGAAGATTGGGAATATAAGAGCGAAAAGCTATGCAAAAAAGGACCAGC
AAATGAAGAAACGGCCCAAAAAGCACCAACGCCAAACAATGAAGAACTCT
AATGCTGGCCATCAGGAGATGATTGGGAAGGCTTGAATAAAACATTGAAT
GGAAATTTGAAGGATCCTGTTAATCCGATATCGGCATGTTTCAAACCAGC
TGGAGAGACTGATGCAATGAGCAAGGAGCGAGAAGCAGAATGTTCACAGC
AATTACAAGACTTCAAATCAGATCCGTACTGGGTGCGAAAACATTCCGGA
CTCACACAATCAGCAGGTCAAGTAGGGGCATGGAATTCAACGGAAAGTGT
CAAGGTAGTAGAAGCCAGGACAGTCGCACACATCAAAACCGCCGTCGACT
TTGCACGCAAACACAATATGCGTATAGTTGTTAAAGGCACAGGTCACGAA
TACAACGGCCGTTCCAATGCACCTGATTCACTCCTTATATGGACATATCA
CATGAGCGAGATTATATTCCACGATCAACTCTCATGGGATTGTCCTGCAT
GCAAAGACGAGAAGGTTACCAGTGTCACTGTAGGCGCTGGTGTCGTTTGG
GGAGATATCTATGCTGCGGCAAACAGGAAAAACTTGTACGTTCAAGGAGG
AACATGCCCAACAGTCGGTGTCGTTGGATTCACCCTGGGAGGAGGAATTG
GTATCTGGTCCAGAAAATATGGTCTTGGTTCCACCAACTTATTACAAGCG
ACTGTTGTGACGGCTGACGGCGACATTAAACGAGCGTCCAAAGTCGAGAA
TCCTGAATTATACTATGCTCTTCGTGGAGGTGGTTTTGGATTTGGCATTG
TTGCTGACATGACCATTCGAACCCACCCATCACCTAAACAAGTCATCCTT
GTGAAAGGCGACATTAGTACCTATTGTGAGAGCTCATTCAAAAAACTACT
CGCACACTTTTTCACAATCTACAAAGAAGATTTGGTTGGACCACACTGGG
GTGATTATGCGAGAGTGAAAGTCCCCGGCAAACATTCAGGAGAGAAATAC
AAATGGGTATTGTCAATTAACATGAAAGCTGTGGACATTTCATTAGAAAC
AGCGAAAAGAGAGTGGGCGTCTTTCATTCGGTTCGTCAGTATCGGAGATC
TCAGCCACATGTACAAATTCGAAAAATCTAAATATGATGTGTTAAAGTTC
TTGACTATGCCTGGAAATACATTCTGGAGCCGTGCCAATCCTGGTACAGT
ACCAACACTGCAAGATGAATTTGAGCCACATGCAGCTTACAACTGGGGTA
CGGAATTGGACAAGGGATCTGAACAGTTCAAATACTGGCTTCAATTCGGT
ACACGAAACTTGAGAAATGACCAAATATTGACCGACCCAACAACAGGTGC
AGACAAACTCATAACATTCTTTAAAGAGCTCGGCGATCTACCCAGCACAG
CACGCCTTAGCATGGTGTTTAAGGGTGAGGACAACATATTCAACTGTGCA
AGCAACGAACTGGCAAACACTCCAATGGCCCGAATGAACGAAAGCTTCGC
AATGATTTGGGCGTGGGTCGGAGTCCGCAGATTTCATCCAGATATACCCA
TatcattacagaaagattctaAAAATACCACATATACAGAAATCAAGGAT
GAATTCTGTAAAGGTAACAGTCTCGAAGCCTGTCCTGCAtcaaaaaaagt
acaaaaagcaTTTCAGAAATTTAGAGAAGCAACACCAGGAGCGGGGTCTT
ACTTCAACATTGCCGATTATTTTGAGAAGGATTTTAAAGAAGCTTTCTGG
GGAAAAGAGATTTATAAGAAGTTGAGGAAATTAAAGGATAAGTATGATCC
ACATGGATTGTTCTACTGTCACCATTGCGTTGGATCAGAAGATTGGGAAT
ATAAGAGCGAAAAGCTATGCAAAAAAGGACCAGCAAATGAAGAAACGGCC
CAAAAAGCACCAACGCCAAACAATGAAGAACTCTAATGCTGGCCATCAGG
AGATGATTGGGAAGGCTTGAATAAAACATTGAATGGAAATTTGAAGGATC
CTGTTAATCCGATATCGGCATGTTTCAAACCAGCTGGAGAGACTGATGCA
ATGAGCAAGGAGCGAGAAGCAGAATGTTCACAGCAATTACAAGACTTCAA
ATCAGATCCGTACTGGGTGCGAAAACATTCCGGACTCACACAATCAGCAG
GTCAAGTAGGGGCATGGAATTCAACGGAAAGTGTCAAGGTAGTAGAAGCC
AGGACAGTCGCACACATCAAAACCGCCGTCGACTTTGCACGCAAACACAA
TATGCGTATAGTTGTTAAAGGCACAGGTCACGAATACAACGGCCGTTCCA
ATGCACCTGATTCACTCCTTATATGGACATATCACATGAGCGAGATTATA
TTCCACGATCAACTCTCATGGGATTGTCCTGCATGCAAAGACGAGAAGGT
TACCAGTGTCACTGTAGGCGCTGGTGTCGTTTGGGGAGATATCTATGCTG
CGGCAAACAGGAAAAACTTGTACGTTCAAGGAGGAACATGCCCAACAGTC
GGTGTCGTTGGATTCACCCTGGGAGGAGGAATTGGTATCTGGTCCAGAAA
ATATGGTCTTGGTTCCACCAACTTATTACAAGCGACTGTTGTGACGGCTG
ACGGCGACATTAAACGAGCGTCCAAAGTCGAGAATCCTGAATTATACTAT
GCTCTTCGTGGAGGTGGTTTTGGATTTGGCATTGTTGCTGACATGACCAT
TCGAACCCACCCATCACCTAAACAAGTCATCCTTGTGAAAGGCGACATTA
GTACCTATTGTGAGAGCTCATTCAAAAAACTACTCGCACACTTTTTCACA
ATCTACAAAGAAGATTTGGTTGGACCACACTGGGGTGATTATGCGAGAGT
GAAAGTCCCCGGCAAACATTCAGGAGAGAAATACAAATGGGTATTGTCAA
TTAACATGAAAGCTGTGGACATTTCATTAGAAACAGCGAAAAGAGAGTGG
GCGTCTTTCATTCGGTTCGTCAGTATCGGAGATCTCAGCCACATGTACAA
ATTCGAAAAATCTAAATATGATGTGTTAAAGTTCTTGACTATGCCTGGAA
ATACATTCTGGAGCCGTGCCAATCCTGGTACAGTACCAACACTGCAAGAT
GAATTTGAGCCACATGCAGCTTACAACTGGGGTACGGAATTGGACAAGGG
ATCTGAACAGTTCAAATACTGGCTTCAATTCGGTACACGAAACTTGAGAA
ATGACCAAATATTGACCGACCCAACAACAGGTGCAGACAAACTCATAACA
TTCTTTAAAGAGCTCGGCGATCTACCCAGCACAGCACGCCTTAGCATGGT
GTTTAAGGGTGAGGACAACATATTCAACTGTGCAAGCAACGAACTGGCAA
ACACTCCAATGGCCCGAATGAACGAAAGCTTCGCAATGATTTGGGCGTGG
GTCGGAGTCCGCAGATTTCATCCAGATATACCCATatcattacagaaaga
ttctaAAAATACCACATATACAGAAATCAAGGATGAATTCTGTAAAGGTA
ACAGTCTCGAAGCCTGTCCTGCAtcaaaaaaagtacaaaaagcaTTTCAG
AAATTTAGAGAAGCAACACCAGGAGCGGGGTCTTACTTCAACATTGCCGA
TTATTTTGAGAAGGATTTTAAAGAAGCTTTCTGGGGAAAAGAGATTTATA
AGAAGTTGAGGAAATTAAAGGATAAGTATGATCCACATGGATTGTTCTAC
TGTCACCATTGCGTTGGATCAGAAGATTGGGAATATAAGAGCGAAAAGCT
ATGCAAAAAAGGACCAGCAAATGAAGAAACGGCCCAAAAAGCACCAACGC
CAAACAATGAAGAACTCTAATGCTGGCCATCAGGAGATGATTGGGAAGGC
TTGAATAAAACATTGAATGGAAATTTGAAGGATCCTGTTAATCCGATATC
GGCATGTTTCAAACCAGCTGGAGAGACTGATGCAATGAGCAAGGAGCGAG
AAGCAGAATGTTCACAGCAATTACAAGACTTCAAATCAGATCCGTACTGG
GTGCGAAAACATTCCGGACTCACACAATCAGCAGGTCAAGTAGGGGCATG
GAATTCAACGGAAAGTGTCAAGGTAGTAGAAGCCAGGACAGTCGCACACA
TCAAAACCGCCGTCGACTTTGCACGCAAACACAATATGCGTATAGTTGTT
AAAGGCACAGGTCACGAATACAACGGCCGTTCCAATGCACCTGATTCACT
CCTTATATGGACATATCACATGAGCGAGATTATATTCCACGATCAACTCT
CATGGGATTGTCCTGCATGCAAAGACGAGAAGGTTACCAGTGTCACTGTA
GGCGCTGGTGTCGTTTGGGGAGATATCTATGCTGCGGCAAACAGGAAAAA
CTTGTACGTTCAAGGAGGAACATGCCCAACAGTCGGTGTCGTTGGATTCA
CCCTGGGAGGAGGAATTGGTATCTGGTCCAGAAAATATGGTCTTGGTTCC
ACCAACTTATTACAAGCGACTGTTGTGACGGCTGACGGCGACATTAAACG
AGCGTCCAAAGTCGAGAATCCTGAATTATACTATGCTCTTCGTGGAGGTG
GTTTTGGATTTGGCATTGTTGCTGACATGACCATTCGAACCCACCCATCA
CCTAAACAAGTCATCCTTGTGAAAGGCGACATTAGTACCTATTGTGAGAG
CTCATTCAAAAAACTACTCGCACACTTTTTCACAATCTACAAAGAAGATT
TGGTTGGACCACACTGGGGTGATTATGCGAGAGTGAAAGTCCCCGGCAAA
CATTCAGGAGAGAAATACAAATGGGTATTGTCAATTAACATGAAAGCTGT
GGACATTTCATTAGAAACAGCGAAAAGAGAGTGGGCGTCTTTCATTCGGT
TCGTCAGTATCGGAGATCTCAGCCACATGTACAAATTCGAAAAATCTAAA
TATGATGTGTTAAAGTTCTTGACTATGCCTGGAAATACATTCTGGAGCCG
TGCCAATCCTGGTACAGTACCAACACTGCAAGATGAATTTGAGCCACATG
CAGCTTACAACTGGGGTACGGAATTGGACAAGGGATCTGAACAGTTCAAA
TACTGGCTTCAATTCGGTACACGAAACTTGAGAAATGACCAAATATTGAC
CGACCCAACAACAGGTGCAGACAAACTCATAACATTCTTTAAAGAGCTCG
GCGATCTACCCAGCACAGCACGCCTTAGCATGGTGTTTAAGGGTGAGGAC
AACATATTCAACTGTGCAAGCAACGAACTGGCAAACACTCCAATGGCCCG
AATGAACGAAAGCTTCGCAATGATTTGGGCGTGGGTCGGAGTCCGCAGAT
TTCATCCAGATATACCCATatcattacagaaagattctaAAAATACCACA
TATACAGAAATCAAGGATGAATTCTGTAAAGGTAACAGTCTCGAAGCCTG
TCCTGCAtcaaaaaaagtacaaaaagcaTTTCAGAAATTTAGAGAAGCAA
CACCAGGAGCGGGGTCTTACTTCAACATTGCCGATTATTTTGAGAAGGAT
TTTAAAGAAGCTTTCTGGGGAAAAGAGATTTATAAGAAGTTGAGGAAATT
AAAGGATAAGTATGATCCACATGGATTGTTCTACTGTCACCATTGCGTTG
GATCAGAAGATTGGGAATATAAGAGCGAAAAGCTATGCAAAAAAGGACCA
GCAAATGAAGAAACGGCCCAAAAAGCACCAACGCCAAACAATGAAGAACT
CTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037760XLOC_037760Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060008-proteinTCONS_00060008-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00060008-exon-scaffold_333-1491911889:179466..179680TCONS_00060008-exon-scaffold_333-1491911889:179466..179680Clytia hemisphaericaexon
TCONS_00060008-exon-scaffold_333-1510915933:179466..179680TCONS_00060008-exon-scaffold_333-1510915933:179466..179680Clytia hemisphaericaexon
TCONS_00060008-exon-scaffold_333-1575043694:179466..179680TCONS_00060008-exon-scaffold_333-1575043694:179466..179680Clytia hemisphaericaexon
TCONS_00060008-exon-scaffold_333-1491911889:180153..180278TCONS_00060008-exon-scaffold_333-1491911889:180153..180278Clytia hemisphaericaexon
TCONS_00060008-exon-scaffold_333-1510915933:180153..180278TCONS_00060008-exon-scaffold_333-1510915933:180153..180278Clytia hemisphaericaexon
TCONS_00060008-exon-scaffold_333-1575043694:180153..180278TCONS_00060008-exon-scaffold_333-1575043694:180153..180278Clytia hemisphaericaexon
TCONS_00060008-exon-scaffold_333-1491911889:180537..180730TCONS_00060008-exon-scaffold_333-1491911889:180537..180730Clytia hemisphaericaexon
TCONS_00060008-exon-scaffold_333-1510915933:180537..180730TCONS_00060008-exon-scaffold_333-1510915933:180537..180730Clytia hemisphaericaexon
TCONS_00060008-exon-scaffold_333-1575043694:180537..180730TCONS_00060008-exon-scaffold_333-1575043694:180537..180730Clytia hemisphaericaexon
TCONS_00060008-exon-scaffold_333-1491911889:181204..181396TCONS_00060008-exon-scaffold_333-1491911889:181204..181396Clytia hemisphaericaexon
TCONS_00060008-exon-scaffold_333-1510915933:181204..181396TCONS_00060008-exon-scaffold_333-1510915933:181204..181396Clytia hemisphaericaexon
TCONS_00060008-exon-scaffold_333-1575043694:181204..181396TCONS_00060008-exon-scaffold_333-1575043694:181204..181396Clytia hemisphaericaexon
TCONS_00060008-exon-scaffold_333-1491911889:182202..183181TCONS_00060008-exon-scaffold_333-1491911889:182202..183181Clytia hemisphaericaexon
TCONS_00060008-exon-scaffold_333-1510915933:182202..183181TCONS_00060008-exon-scaffold_333-1510915933:182202..183181Clytia hemisphaericaexon
TCONS_00060008-exon-scaffold_333-1575043694:182202..183181TCONS_00060008-exon-scaffold_333-1575043694:182202..183181Clytia hemisphaericaexon
TCONS_00060008-exon-scaffold_333-1491911889:183694..184017TCONS_00060008-exon-scaffold_333-1491911889:183694..184017Clytia hemisphaericaexon
TCONS_00060008-exon-scaffold_333-1510915933:183694..184017TCONS_00060008-exon-scaffold_333-1510915933:183694..184017Clytia hemisphaericaexon
TCONS_00060008-exon-scaffold_333-1575043694:183694..184017TCONS_00060008-exon-scaffold_333-1575043694:183694..184017Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_333supercontigscaffold_333:179466..184017 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0389224	0.0189777	0.154245	0.150904	0.262445	0.145171	0.0250204	0.163967	0.114797	0.0609405	0.197168	0.12961	0.375348	0.322595	9.00632	11.9065	1.68009	2.24613	1.59295	0.974167	0.0188162	0.0275336	0.223138	0.243438	0.208946	0.130536	0.0533703	0.0569582	0.0216004	0.0220074
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR006094Oxid_FAD_bind_N
IPR016167FAD-bd_2_sub1
IPR016169CO_DH_flavot_FAD-bd_sub2
IPR012951BBE
IPR016166FAD-bd_2
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0050660flavin adenine dinucleotide binding
GO:0003824catalytic activity
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00060008 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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