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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059993 ID=TCONS_00059993|Name=TCONS_00059993|organism=Clytia hemisphaerica|type=transcript|length=2722bp AAAATCTCTAGTTCTTTTTTTTGATCTGATAAtatcacaaaacaaaaaat gataagAGATGATAAAAAGCGGACGCAAGGTATTTATATGAGATTGTCAA GCTGATAAAGTAGCGAAGAGAGCGTATTAAACTAAAGGATAAGTATTGCT AATAAAATAGCAGTTCTCGGAGACtgtttcaacaaaaacatttcaaatac aAATTGATAATGAACCAATCGTACTGCATCGACTGTGGATTTTATAATCA AGGAGCGTCATGGGCCCAGAGCACCACCTGCGACCGCTGCAATATACCGA GTATAAATTGTTACCGACGAAGGATCGAAATCTGGTCTTTGAACACAGAA AGGCGAACTTTGATTTGTTCGTTTGATATTCATCCGTCTAGCTACATCGA AGATGTCAAACAAAGAGTGTCAAAAAAAACCGGAATCTCTTTTAAAGATT ATAGATTGTATCGTTTTCGTGAAGACCGTCCCGCTGAGCGAGAAAGTCAA TTAATGGAATGGCACCCGTTGGATGATTATGAGACAATAGATTACCATTA CAGCAATACAGTGAATTATGGTTTGAAAGTAAACAAGTATATGATGGTTG AAAATAAAGCCAAAATTTCAATCATGTCTAATACCTTACCTTACCGGGTC GAGCGAGCTCGGCATAAGATGTCTAATAAAAACTCACAAAAGATACGTGA TAGGTACAATATAAACTGTATATCAACATTTCGATTAAATTTCTTGACAA AAACAGTGGAGTTGAAGTTCAAAAACTTTCGGTTAATAAGAGATGTGAAA ATTCATATTCAAAAGGAATTTAACATCAGAGTTGGTGACcaagttttgat ttataaagGTAAAAAATTGATGGAGAATCAATTGACAAGAGATGTGTTtc ttgaaaatcaaataaattcaTTAAGAGACGTATCTATTAGCTTGGTGATT GAAAAAAAGCCATTCATGCTCAAAATATCACCTCAAATACGTTCTCAGTC ATGGTTTAGCATTTCTATCAATGATTCTGACAACATTGAAGAGGTGAAGC AGCAAATACAAGCAGAAACAGAAATTCCTATCCAAAACATACATCTCATT GACCAAAAGATGCAAGACATTTTGTGTGATACAAAAAAAGTCGAAGAATA TAAGTTTCTGGATCAATCAGTGATAACTTTGCAACAAAAACTATCCATTA GACTTCACTTTGCGAAAGATAATCGAGTCGAGGAGAGAGTTGAAATTTTA CCAGAGTATGAAAAAAGAACCGTCTTAGACCTCTTGGAAGAAATCCGCGA ATCTTTCTTGCCGAAGGAAATGAATGTTGAGGAAATTAGATATCATCGTT ATGGCACCCTGATTACAAGAATCTatgaaatagactttagaatcaagaaa attaaaaaatgctcaATAATGTAGCtcaaaatgtatataatatctGATCC AAACTTTTAAAACGATGCCATTAATCTTGAATAAGGTTAACTCCGTCGTT TATgcaattatctcaaaataagaaaaatgcaGTTACTTCCTTTTTTCAGA TCACGGCAGTAATAGAGCATAAAATTCTGAGcgaaaaaatgtattacaac aactctctgactaaaacacacaaagaaatacagccgctttaagaccaact aactgtcagctctactgtgatttattaacgtcaaatcttgtcttaACCGA AAAAAATCGACGTTAACGGCATAAAGTCCTCTTtttcttaaccctatttt tacaAGGCTTTTTCGAATTTTGTAACAGGAAGCATACAATTCAAGCGTCT GATAAAAACTTACTTTAAATCCAAACGTCCACACATAAGTACCAAGCtga ttattttagttttttgcaagtTCTCATTGTTTTATTCTTATTAAGGGCTT taaccatagtgaatttttaatacttgccatgtacaaaatataaatttctg ccTGATGGATGTAGCTAACNATCGCAACGAGAAAatctgatgaagaagaa aatgaagacttttccAAAGAAGAGTATTGCAACTTCAGaacttattttcg gcgaagaaaaaaacattttgaaaagactttCGAGTTAAATGGTGTATCTA TTACCAAACCAAGCCATTCTGCACAAGAGGTGCTTATattatctattttt cttataatcaCAAAGTTTATAAGAAACCTACAATCAAGATCATactattt gagaaaaaaggataattcccaggaagttttgaaaccacaatcgatttgta ggtgctctaaagtaggttcgaagaattgagttttaactctgagttttaac gctagacttatgACTTAGCTTAGggtctgaggatccaaaagttcaaaaat agtccaataaggctcagaatatagccttaAATTGAAGTCTGCCAACcgct cccaaattgaaatattcaattaaattaaagagatcaactttctcgccgga actttaaatcttgaaaaacgttaaaataaccggaattctcaatatatttc tggAGCTTATTTATTGtttcttataagcaccaacTTTATAGGAAACTTAT CAATAGCTTGTTAAGGGGAATTTTGCCGATTGGAAACGAAATGGCTAGGA AAAATGCCTTAATTTTTACGTCAAAAAGTCGAAATGTTTAAGAAATGTAG TCAGGTGAAGGCTTCATGAAGTTGAATAAAGACGTAATGTGCACTTCAAG TGTAAAAAGTGAGCAATACGAA Run BLAST on NCBI protein sequence of TCONS_00059993-protein >TCONS_00059993-protein ID=TCONS_00059993-protein|Name=TCONS_00059993-protein|organism=Clytia hemisphaerica|type=polypeptide|length=404bp
MNQSYCIDCGFYNQGASWAQSTTCDRCNIPSINCYRRRIEIWSLNTERRT LICSFDIHPSSYIEDVKQRVSKKTGISFKDYRLYRFREDRPAERESQLME WHPLDDYETIDYHYSNTVNYGLKVNKYMMVENKAKISIMSNTLPYRVERA RHKMSNKNSQKIRDRYNINCISTFRLNFLTKTVELKFKNFRLIRDVKIHI QKEFNIRVGDQVLIYKGKKLMENQLTRDVFLENQINSLRDVSISLVIEKK PFMLKISPQIRSQSWFSISINDSDNIEEVKQQIQAETEIPIQNIHLIDQK MQDILCDTKKVEEYKFLDQSVITLQQKLSIRLHFAKDNRVEERVEILPEY EKRTVLDLLEEIRESFLPKEMNVEEIRYHRYGTLITRIYEIDFRIKKIKK CSIM Run BLAST on NCBI transcript from alignment at scaffold_331:1257189..1259910 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059993 ID=TCONS_00059993|Name=TCONS_00059993|organism=Clytia hemisphaerica|type=transcript|length=2722bp|location=Sequence derived from alignment at scaffold_331:1257189..1259910 (Clytia hemisphaerica) TTCGTATTGCTCACTTTTTACACTTGAAGTGCACATTACGTCTTTATTCA
ACTTCATGAAGCCTTCACCTGACTACATTTCTTAAACATTTCGACTTTTT
GACGTAAAAATTAAGGCATTTTTCCTAGCCATTTCGTTTCCAATCGGCAA
AATTCCCCTTAACAAGCTATTGATAAGTTTCCTATAAAgttggtgcttat
aagaaaCAATAAATAAGCTccagaaatatattgagaattccggttatttt
aacgtttttcaagatttaaagttccggcgagaaagttgatctctttaatt
taattgaatatttcaatttgggagcgGTTGGCAGACTTCAATTtaaggct
atattctgagccttattggactatttttgaacttttggatcctcagaccC
TAAGCTAAGTcataagtctagcgttaaaactcagagttaaaactcaattc
ttcgaacctactttagagcacctacaaatcgattgtggtttcaaaacttc
ctgggaattatccttttttctcaaatagtATGATCTTGATTGTAGGTTTC
TTATAAACTTTGtgattataagaaaaatagataatATAAGCACCTCTTGT
GCAGAATGGCTTGGTTTGGTAATAGATACACCATTTAACTCGaaagtctt
ttcaaaatgtttttttcttcgccgaaaataagttCTGAAGTTGCAATACT
CTTCTTTggaaaagtcttcattttcttcttcatcagatTTTCTCGTTGCG
ATNGTTAGCTACATCCATCAggcagaaatttatattttgtacatggcaag
tattaaaaattcactatggttaAAGCCCTTAATAAGAATAAAACAATGAG
AacttgcaaaaaactaaaataatcaGCTTGGTACTTATGTGTGGACGTTT
GGATTTAAAGTAAGTTTTTATCAGACGCTTGAATTGTATGCTTCCTGTTA
CAAAATTCGAAAAAGCCTtgtaaaaatagggttaagaaaAAGAGGACTTT
ATGCCGTTAACGTCGATTTTTTTCGGTtaagacaagatttgacgttaata
aatcacagtagagctgacagttagttggtcttaaagcggctgtatttctt
tgtgtgttttagtcagagagttgttgtaatacattttttcgCTCAGAATT
TTATGCTCTATTACTGCCGTGATCTGAAAAAAGGAAGTAACtgcattttt
cttattttgagataattgcATAAACGACGGAGTTAACCTTATTCAAGATT
AATGGCATCGTTTTAAAAGTTTGGATCagatattatatacattttgaGCT
ACATTATtgagcattttttaattttcttgattctaaagtctatttcatAG
ATTCTTGTAATCAGGGTGCCATAACGATGATATCTAATTTCCTCAACATT
CATTTCCTTCGGCAAGAAAGATTCGCGGATTTCTTCCAAGAGGTCTAAGA
CGGTTCTTTTTTCATACTCTGGTAAAATTTCAACTCTCTCCTCGACTCGA
TTATCTTTCGCAAAGTGAAGTCTAATGGATAGTTTTTGTTGCAAAGTTAT
CACTGATTGATCCAGAAACTTATATTCTTCGACTTTTTTTGTATCACACA
AAATGTCTTGCATCTTTTGGTCAATGAGATGTATGTTTTGGATAGGAATT
TCTGTTTCTGCTTGTATTTGCTGCTTCACCTCTTCAATGTTGTCAGAATC
ATTGATAGAAATGCTAAACCATGACTGAGAACGTATTTGAGGTGATATTT
TGAGCATGAATGGCTTTTTTTCAATCACCAAGCTAATAGATACGTCTCTT
AAtgaatttatttgattttcaagaAACACATCTCTTGTCAATTGATTCTC
CATCAATTTTTTACctttataaatcaaaacttgGTCACCAACTCTGATGT
TAAATTCCTTTTGAATATGAATTTTCACATCTCTTATTAACCGAAAGTTT
TTGAACTTCAACTCCACTGTTTTTGTCAAGAAATTTAATCGAAATGTTGA
TATACAGTTTATATTGTACCTATCACGTATCTTTTGTGAGTTTTTATTAG
ACATCTTATGCCGAGCTCGCTCGACCCGGTAAGGTAAGGTATTAGACATG
ATTGAAATTTTGGCTTTATTTTCAACCATCATATACTTGTTTACTTTCAA
ACCATAATTCACTGTATTGCTGTAATGGTAATCTATTGTCTCATAATCAT
CCAACGGGTGCCATTCCATTAATTGACTTTCTCGCTCAGCGGGACGGTCT
TCACGAAAACGATACAATCTATAATCTTTAAAAGAGATTCCGGTTTTTTT
TGACACTCTTTGTTTGACATCTTCGATGTAGCTAGACGGATGAATATCAA
ACGAACAAATCAAAGTTCGCCTTTCTGTGTTCAAAGACCAGATTTCGATC
CTTCGTCGGTAACAATTTATACTCGGTATATTGCAGCGGTCGCAGGTGGT
GCTCTGGGCCCATGACGCTCCTTGATTATAAAATCCACAGTCGATGCAGT
ACGATTGGTTCATTATCAATTtgtatttgaaatgtttttgttgaaacaGT
CTCCGAGAACTGCTATTTTATTAGCAATACTTATCCTTTAGTTTAATACG
CTCTCTTCGCTACTTTATCAGCTTGACAATCTCATATAAATACCTTGCGT
CCGCTTTTTATCATCTcttatcattttttgttttgtgataTTATCAGATC
AAAAAAAAGAACTAGAGATTTT Coding sequence (CDS) from alignment at scaffold_331:1257189..1259910 >TCONS_00059993 ID=TCONS_00059993|Name=TCONS_00059993|organism=Clytia hemisphaerica|type=CDS|length=1215bp|location=Sequence derived from alignment at scaffold_331:1257189..1259910 (Clytia hemisphaerica) CTACATTATtgagcattttttaattttcttgattctaaagtctatttcat AGATTCTTGTAATCAGGGTGCCATAACGATGATATCTAATTTCCTCAACA TTCATTTCCTTCGGCAAGAAAGATTCGCGGATTTCTTCCAAGAGGTCTAA GACGGTTCTTTTTTCATACTCTGGTAAAATTTCAACTCTCTCCTCGACTC GATTATCTTTCGCAAAGTGAAGTCTAATGGATAGTTTTTGTTGCAAAGTT ATCACTGATTGATCCAGAAACTTATATTCTTCGACTTTTTTTGTATCACA CAAAATGTCTTGCATCTTTTGGTCAATGAGATGTATGTTTTGGATAGGAA TTTCTGTTTCTGCTTGTATTTGCTGCTTCACCTCTTCAATGTTGTCAGAA TCATTGATAGAAATGCTAAACCATGACTGAGAACGTATTTGAGGTGATAT TTTGAGCATGAATGGCTTTTTTTCAATCACCAAGCTAATAGATACGTCTC TTAAtgaatttatttgattttcaagaAACACATCTCTTGTCAATTGATTC TCCATCAATTTTTTACctttataaatcaaaacttgGTCACCAACTCTGAT GTTAAATTCCTTTTGAATATGAATTTTCACATCTCTTATTAACCGAAAGT TTTTGAACTTCAACTCCACTGTTTTTGTCAAGAAATTTAATCGAAATGTT GATATACAGTTTATATTGTACCTATCACGTATCTTTTGTGAGTTTTTATT AGACATCTTATGCCGAGCTCGCTCGACCCGGTAAGGTAAGGTATTAGACA TGATTGAAATTTTGGCTTTATTTTCAACCATCATATACTTGTTTACTTTC AAACCATAATTCACTGTATTGCTGTAATGGTAATCTATTGTCTCATAATC ATCCAACGGGTGCCATTCCATTAATTGACTTTCTCGCTCAGCGGGACGGT CTTCACGAAAACGATACAATCTATAATCTTTAAAAGAGATTCCGGTTTTT TTTGACACTCTTTGTTTGACATCTTCGATGTAGCTAGACGGATGAATATC AAACGAACAAATCAAAGTTCGCCTTTCTGTGTTCAAAGACCAGATTTCGA TCCTTCGTCGGTAACAATTTATACTCGGTATATTGCAGCGGTCGCAGGTG GTGCTCTGGGCCCATGACGCTCCTTGATTATAAAATCCACAGTCGATGCA GTACGATTGGTTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00059993-exon-scaffold_331-1491911889:1257189..1259910 | TCONS_00059993-exon-scaffold_331-1491911889:1257189..1259910 | Clytia hemisphaerica | exon |
TCONS_00059993-exon-scaffold_331-1510915933:1257189..1259910 | TCONS_00059993-exon-scaffold_331-1510915933:1257189..1259910 | Clytia hemisphaerica | exon |
TCONS_00059993-exon-scaffold_331-1575043694:1257189..1259910 | TCONS_00059993-exon-scaffold_331-1575043694:1257189..1259910 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_331 | supercontig | scaffold_331:1257189..1259910 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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