TCONS_00059991 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059991
Unique NameTCONS_00059991
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length529

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059991 ID=TCONS_00059991|Name=TCONS_00059991|organism=Clytia hemisphaerica|type=transcript|length=529bp
TCagtaatccaaagaaaattaATAAGACAATAGCCAAAGAATCAGCCAAG
GACAAAGCGCGAATCAGATAATAATTATTGCTCGTGTGTAAGCGAATTTT
GTAGATGCTCCACTGAACGGCAAGATGAAGACATAAAGTCAAACAAAAGA
TTACTAAAAGGACCAGAAAACCAGGCTCAATGTCCTTTGAAAACAAGCTG
ATTTGTGGTCCAGTTGAGTTGTTCATATTCTGCCACAAGTTATAGTTGGT
AATCTAACTAAACAAATGTGAAGAAAAGAGAGGGGACGCTGGCTAATTTA
AGGTAGATAAAAAACTTGTAAGAGGGAAAAAAAGGAATTAAAATGCACCA
ATCAAAATGCACCGAGCCACCTGCATTCCATTAGTAATAAAGTAGTCCTA
CCTGACACTAAATCCCATCTGCATTATCCCTTAGACTCCGTTTTCATTCC
ATAAAATCAACCCTACAGCGGGCatggattttttcaaaaatggacgTTTT
ACGAGAATGGtcatactcttgtctcccga
Run BLAST on NCBI

transcript from alignment at scaffold_331:1245045..1245573

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059991 ID=TCONS_00059991|Name=TCONS_00059991|organism=Clytia hemisphaerica|type=transcript|length=529bp|location=Sequence derived from alignment at scaffold_331:1245045..1245573 (Clytia hemisphaerica)
tcgggagacaagagtatgaCCATTCTCGTAAAAcgtccatttttgaaaaa
atccatGCCCGCTGTAGGGTTGATTTTATGGAATGAAAACGGAGTCTAAG
GGATAATGCAGATGGGATTTAGTGTCAGGTAGGACTACTTTATTACTAAT
GGAATGCAGGTGGCTCGGTGCATTTTGATTGGTGCATTTTAATTCCTTTT
TTTCCCTCTTACAAGTTTTTTATCTACCTTAAATTAGCCAGCGTCCCCTC
TCTTTTCTTCACATTTGTTTAGTTAGATTACCAACTATAACTTGTGGCAG
AATATGAACAACTCAACTGGACCACAAATCAGCTTGTTTTCAAAGGACAT
TGAGCCTGGTTTTCTGGTCCTTTTAGTAATCTTTTGTTTGACTTTATGTC
TTCATCTTGCCGTTCAGTGGAGCATCTACAAAATTCGCTTACACACGAGC
AATAATTATTATCTGATTCGCGCTTTGTCCTTGGCTGATTCTTTGGCTAT
TGTCTTATtaattttctttggattactGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037747XLOC_037747Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059991-exon-scaffold_331-1491911889:1245045..1245573TCONS_00059991-exon-scaffold_331-1491911889:1245045..1245573Clytia hemisphaericaexon
TCONS_00059991-exon-scaffold_331-1510915933:1245045..1245573TCONS_00059991-exon-scaffold_331-1510915933:1245045..1245573Clytia hemisphaericaexon
TCONS_00059991-exon-scaffold_331-1575043694:1245045..1245573TCONS_00059991-exon-scaffold_331-1575043694:1245045..1245573Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:1245045..1245573 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.110868	0.383702	0	0	0.149512	0	0.142538	0.133443	0.106535	0	0	0	0.287617	0.382872	0.188863	0	0.0832281	0	0.353565	0.0440807	0	0.587646	0.254238	0.11557	0.35952	0.367135	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059991 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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