|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059986 ID=TCONS_00059986|Name=TCONS_00059986|organism=Clytia hemisphaerica|type=transcript|length=1893bp
ATGAAAGACTTTGATTTTTCTATTACTGGCATTATTGACAAGGAGTAAAT
GAAACGCTTTGCTCGTATTTACATAAGTATAAAATTCAGCATAGCAACTA
TTATTGAAGACTTTATGTGATTAGCATTTGCTAAAACATTGTATTTACCA
AAGATTTGCTTTTCTATAAATTTTAAGTTATTTCACCGTGAATCTGGTTT
CCTAGTTTCAATCTTTACGAGAGACAAAGAATTTAAAGTTTTGGCTATAC
GGTATGAATGGTTCATCCACGAGAAACGATACTTTTTGTTACGATTTACC
GATTGCAGTTGGCAACTCGACATTTTGTGGATTGACAGAAAAATGGAGTC
CACGTTTCTCTGAAGGGAAATTATTGGCAATGGCAATCATTCCTGTGTTT
GTCTACTGGATTATTCTCCTCAAGATGATTAAGGAACTGTACAAATCAAT
CCTCCAATCATGGGAGAAACACATTGACAAAACTACAAAGGAATACTGGG
CTCTAAGCACTGCTCAAAATCCATACCAATATCTTGAGGGAGTCGAATTG
CtttataaagaagaaaaatgggCTGCTGCAGTAAACAGCTCATGGATATA
TTATTTTAAGAATCATATTAGTAACCTTTCAGCCTTTCTCAGACGCTCTA
ACGAAGTAGGATTTATCCTTCGGGCTAAATCTTATTTTTCGTTAGTCGTT
CttgttttggtgaaatatttttggGATGCAATTGATTTGACTTTGGATGT
CTACATTTTCTACCGGCTTGAGAGAGGTGACATTTTAGATACTGTTATAT
ATCGAAATGATCATGTCAATGACTCAATCTATGCTTTTGCCGTTCTTGGT
TGCCTGACGAAAATCGGTGCCTGGAAACTATATCAAATTTCAGCAATAAG
CAAAGAAGAAGAATTTTTAAGCTTTATTAAAAATGTCATTGTTTTGGTTG
GGTTTCTCTTTGAAGATGGCCCTGAATTAATCTTGGAATATTTCTAcgtc
gaaaaatatatcacatCTTATACTGCGCTAATGGTTGCAAAAGATTGTAT
GATCGCTATTTTATTGGTGCAAACTGCTATCAAAACAATGGCTTACTGTT
TCAGAGAGTACAAAGGTTGGGATCGTGTAATTCATATATTGATAAACGTT
GTAGTTCTTTTCTCGGTATTATCCTCTATCCTGCGTGTGGCTGGTTCTTT
GTATCAATACATCACCAAGAAATTGAGACGGTCTTGTTTCGAAATTACAG
GAGAAAAGATTTTACAAACACCGTTTGACTCAGAGTGCATGCGTGGTATC
GATTATGCGGTTCTCGTCACCTCGCTTGTACCGTTGAGTgtgctttcttt
ttttttgagtgTGGTTCTCATATTTATGATTGAAAacatgtttgaaaata
tatgGAGTTATATAACGACNGTTCTCATATTTATGATTTTCGtgatgttt
gaaaatatattgagTTATATAACGAAACGGGACATATGTAAACATTTCTG
ACCAAGAGGTTAACCTTGTGACGAGGTACAATTAATTTATCGAAGAAAAT
CTGATTTCGTGGACACTGCTGTCGAGACATTCTCGGAATGAAACCTTTAA
TCACAGACGTAATATCTTTTGAGACTCTCTGACCAACCTTTATCGATCAG
GTGGTTAAAGGATGGTCACTGCACCATTTCGGGAATTATGGATAAAAATA
TTCGATTACAATATTAcataaaatacaagaaaaattatttttactaaatt
tgaattttctcaACGAAACTGTTAAACATACGATAAAGTGATTTCTTTTT
ATTCCTGACTGGAACGTGTTATTGTCTGGATATTTTTACCAGAAACCCCC
ACCCTTTACCTTTGGTCAACAAGTCAACAAGGAATGATTAAAT Run BLAST on NCBI protein sequence of TCONS_00059986-protein >TCONS_00059986-protein ID=TCONS_00059986-protein|Name=TCONS_00059986-protein|organism=Clytia hemisphaerica|type=polypeptide|length=415bp
MNGSSTRNDTFCYDLPIAVGNSTFCGLTEKWSPRFSEGKLLAMAIIPVFV
YWIILLKMIKELYKSILQSWEKHIDKTTKEYWALSTAQNPYQYLEGVELL
YKEEKWAAAVNSSWIYYFKNHISNLSAFLRRSNEVGFILRAKSYFSLVVL
VLVKYFWDAIDLTLDVYIFYRLERGDILDTVIYRNDHVNDSIYAFAVLGC
LTKIGAWKLYQISAISKEEEFLSFIKNVIVLVGFLFEDGPELILEYFYVE
KYITSYTALMVAKDCMIAILLVQTAIKTMAYCFREYKGWDRVIHILINVV
VLFSVLSSILRVAGSLYQYITKKLRRSCFEITGEKILQTPFDSECMRGID
YAVLVTSLVPLSVLSFFLSVVLIFMIENMFENIWSYITXVLIFMIFVMFE
NILSYITKRDICKHF Run BLAST on NCBI transcript from alignment at scaffold_331:1142992..1144884 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059986 ID=TCONS_00059986|Name=TCONS_00059986|organism=Clytia hemisphaerica|type=transcript|length=1893bp|location=Sequence derived from alignment at scaffold_331:1142992..1144884 (Clytia hemisphaerica)
ATTTAATCATTCCTTGTTGACTTGTTGACCAAAGGTAAAGGGTGGGGGTT
TCTGGTAAAAATATCCAGACAATAACACGTTCCAGTCAGGAATAAAAAGA
AATCACTTTATCGTATGTTTAACAGTTTCGTtgagaaaattcaaatttag
taaaaataatttttcttgtattttatgTAATATTGTAATCGAATATTTTT
ATCCATAATTCCCGAAATGGTGCAGTGACCATCCTTTAACCACCTGATCG
ATAAAGGTTGGTCAGAGAGTCTCAAAAGATATTACGTCTGTGATTAAAGG
TTTCATTCCGAGAATGTCTCGACAGCAGTGTCCACGAAATCAGATTTTCT
TCGATAAATTAATTGTACCTCGTCACAAGGTTAACCTCTTGGTCAGAAAT
GTTTACATATGTCCCGTTTCGTTATATAActcaatatattttcaaacatc
aCGAAAATCATAAATATGAGAACNGTCGTTATATAACTCcatatattttc
aaacatgtTTTCAATCATAAATATGAGAACCAcactcaaaaaaaaagaaa
gcacACTCAACGGTACAAGCGAGGTGACGAGAACCGCATAATCGATACCA
CGCATGCACTCTGAGTCAAACGGTGTTTGTAAAATCTTTTCTCCTGTAAT
TTCGAAACAAGACCGTCTCAATTTCTTGGTGATGTATTGATACAAAGAAC
CAGCCACACGCAGGATAGAGGATAATACCGAGAAAAGAACTACAACGTTT
ATCAATATATGAATTACACGATCCCAACCTTTGTACTCTCTGAAACAGTA
AGCCATTGTTTTGATAGCAGTTTGCACCAATAAAATAGCGATCATACAAT
CTTTTGCAACCATTAGCGCAGTATAAGatgtgatatatttttcgacgTAG
AAATATTCCAAGATTAATTCAGGGCCATCTTCAAAGAGAAACCCAACCAA
AACAATGACATTTTTAATAAAGCTTAAAAATTCTTCTTCTTTGCTTATTG
CTGAAATTTGATATAGTTTCCAGGCACCGATTTTCGTCAGGCAACCAAGA
ACGGCAAAAGCATAGATTGAGTCATTGACATGATCATTTCGATATATAAC
AGTATCTAAAATGTCACCTCTCTCAAGCCGGTAGAAAATGTAGACATCCA
AAGTCAAATCAATTGCATCccaaaaatatttcaccaaaacaaGAACGACT
AACGAAAAATAAGATTTAGCCCGAAGGATAAATCCTACTTCGTTAGAGCG
TCTGAGAAAGGCTGAAAGGTTACTAATATGATTCTTAAAATAATATATCC
ATGAGCTGTTTACTGCAGCAGcccatttttcttctttataaaGCAATTCG
ACTCCCTCAAGATATTGGTATGGATTTTGAGCAGTGCTTAGAGCCCAGTA
TTCCTTTGTAGTTTTGTCAATGTGTTTCTCCCATGATTGGAGGATTGATT
TGTACAGTTCCTTAATCATCTTGAGGAGAATAATCCAGTAGACAAACACA
GGAATGATTGCCATTGCCAATAATTTCCCTTCAGAGAAACGTGGACTCCA
TTTTTCTGTCAATCCACAAAATGTCGAGTTGCCAACTGCAATCGGTAAAT
CGTAACAAAAAGTATCGTTTCTCGTGGATGAACCATTCATACCGTATAGC
CAAAACTTTAAATTCTTTGTCTCTCGTAAAGATTGAAACTAGGAAACCAG
ATTCACGGTGAAATAACTTAAAATTTATAGAAAAGCAAATCTTTGGTAAA
TACAATGTTTTAGCAAATGCTAATCACATAAAGTCTTCAATAATAGTTGC
TATGCTGAATTTTATACTTATGTAAATACGAGCAAAGCGTTTCATTTACT
CCTTGTCAATAATGCCAGTAATAGAAAAATCAAAGTCTTTCAT Coding sequence (CDS) from alignment at scaffold_331:1142992..1144884 >TCONS_00059986 ID=TCONS_00059986|Name=TCONS_00059986|organism=Clytia hemisphaerica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_331:1142992..1144884 (Clytia hemisphaerica)
TCAGAAATGTTTACATATGTCCCGTTTCGTTATATAActcaatatatttt
caaacatcaCGAAAATCATAAATATGAGAACNGTCGTTATATAACTCcat
atattttcaaacatgtTTTCAATCATAAATATGAGAACCAcactcaaaaa
aaaagaaagcacACTCAACGGTACAAGCGAGGTGACGAGAACCGCATAAT
CGATACCACGCATGCACTCTGAGTCAAACGGTGTTTGTAAAATCTTTTCT
CCTGTAATTTCGAAACAAGACCGTCTCAATTTCTTGGTGATGTATTGATA
CAAAGAACCAGCCACACGCAGGATAGAGGATAATACCGAGAAAAGAACTA
CAACGTTTATCAATATATGAATTACACGATCCCAACCTTTGTACTCTCTG
AAACAGTAAGCCATTGTTTTGATAGCAGTTTGCACCAATAAAATAGCGAT
CATACAATCTTTTGCAACCATTAGCGCAGTATAAGatgtgatatattttt
cgacgTAGAAATATTCCAAGATTAATTCAGGGCCATCTTCAAAGAGAAAC
CCAACCAAAACAATGACATTTTTAATAAAGCTTAAAAATTCTTCTTCTTT
GCTTATTGCTGAAATTTGATATAGTTTCCAGGCACCGATTTTCGTCAGGC
AACCAAGAACGGCAAAAGCATAGATTGAGTCATTGACATGATCATTTCGA
TATATAACAGTATCTAAAATGTCACCTCTCTCAAGCCGGTAGAAAATGTA
GACATCCAAAGTCAAATCAATTGCATCccaaaaatatttcaccaaaacaa
GAACGACTAACGAAAAATAAGATTTAGCCCGAAGGATAAATCCTACTTCG
TTAGAGCGTCTGAGAAAGGCTGAAAGGTTACTAATATGATTCTTAAAATA
ATATATCCATGAGCTGTTTACTGCAGCAGcccatttttcttctttataaa
GCAATTCGACTCCCTCAAGATATTGGTATGGATTTTGAGCAGTGCTTAGA
GCCCAGTATTCCTTTGTAGTTTTGTCAATGTGTTTCTCCCATGATTGGAG
GATTGATTTGTACAGTTCCTTAATCATCTTGAGGAGAATAATCCAGTAGA
CAAACACAGGAATGATTGCCATTGCCAATAATTTCCCTTCAGAGAAACGT
GGACTCCATTTTTCTGTCAATCCACAAAATGTCGAGTTGCCAACTGCAAT
CGGTAAATCGTAACAAAAAGTATCGTTTCTCGTGGATGAACCATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059986-exon-scaffold_331-1491911889:1142992..1144884 | TCONS_00059986-exon-scaffold_331-1491911889:1142992..1144884 | Clytia hemisphaerica | exon |
| TCONS_00059986-exon-scaffold_331-1510915933:1142992..1144884 | TCONS_00059986-exon-scaffold_331-1510915933:1142992..1144884 | Clytia hemisphaerica | exon |
| TCONS_00059986-exon-scaffold_331-1575043694:1142992..1144884 | TCONS_00059986-exon-scaffold_331-1575043694:1142992..1144884 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:1142992..1144884 . |
Blast
The following BLAST results are available for this feature:
|
