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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059980 ID=TCONS_00059980|Name=TCONS_00059980|organism=Clytia hemisphaerica|type=transcript|length=2739bp
aacttttAATATTAAACTATTATATGTTTCGATATATTAATATCATCATC
AGTAATTATTtagtgttttgaaaaataaatcctTCTTTTGTATTGTTTCA
GGaggaaaacaaaataaatcaataaaaatgTATATGAAACTTTTGCCAAT
CGCAGTGTTGCTACTCCAACAATCTTTTGTTGCAGCTCAGAAACGTGTTT
GCGTGGAAGGCTTCATTATGGATCAATTTTGCATCGAGCGTAAAACATTA
CTCGACGCCGGACAGTTCGAAACGCTTAAAAACCCTGAACAACATTCCGT
TCATTGTTTAATAGATGTGCCTTTTTGCGTTGACAGTGGTTTTAGTGTAT
TGCTTCCAGCTCCTGCAGGtagtgaaaataattattttgaagctTATCGA
TTCAATGAAGAAGATACACAAAAATTAGTGACATTGGGAAAAGAGCATGG
TGCTTGTACAGTCTGTAAGAAACAAACTGACgaatttagaaaaaaaggaT
TTCGAGCAACTATCGTTGGAATTGAAGAAGGAGAAAGATATCCTAAAAAT
TTAACAATCGAAGCAGCTAACCTTTCACAAAAATGGGTGGATCCATCTTC
AACTGATGACGGATGTTCTGCTTTCAAAGATCTCATAACGACAACCACCC
CTCAACCTACAACTACAACGATCGCACCAGTTGAAAACACAACGGCAACT
GTTAACATTACAGTAACAACAACGGCCGTCCCAACCGAAAATACAACGAC
CACCATGTTGCCAAGCAACAACACAACGACCACCATGGTACCCGAAGCCA
ACATGACAACAACAGACAACACAACAGTCACGATCCCGCCCAAAGCTACA
GATCCTGTAGAAAACACAACAACTGTTGCCATAACTACAACGCCCCCAAG
TCTCCCTACTACCACCCAACGCACGATTATTAAGACCGAAAAACGATGCG
TCGAGGGCCATATTATGGATCGTAAATGTATCATAGACACCGTCCTCTTG
GATGCACCAACTGTCAAANGACAACACAACGACCACCATGGTACCTAAAG
ACAACATGACAACAACAGACAACACAACAGTCACGATCCCGCCCAAAGCT
ACAGATCCTGTAGAAAACACAACAACTGTTGCCATAACTACAACGCCCAC
AAGTCGCCCTACTACCACCCAACGCACGATTATTAAGACCGAAAAACGAT
GCGTCGAGGGCCATATTATGGATCGTAAATGTATCATAGACACCGTCCTC
TTGGATGCACCAACTgtcaaaacattggaaaatccgGAAGTCCATTCAGT
CCATTGTCTGATTGGAGTTCGTGTATGCGTTGTAAGTGGCTTCAGCGTAT
TacttaaaaatgaagatcaaaaTGTAACATCAGCATACTATGAAGCATAT
GAATTGGATGAGCGAGGTCTACAAATGGTTATCGAGGATGCAAAGAAAGT
TGGCGTTTGCCGTAGTTGCGATAGTACTGGGAATATCACTAAAGGATATC
GCGCTACCATTTATGGTACTGCCACCATATTCTCGTCACCACCTCATCAG
TTGAAAgttaagaaattgaaattatctcCAAGAGTCTGGGACGAGACTGT
GGCTGAAGATGGATGTGAAAATGACTTTGGTAAAGATGAAGCAACAACGA
CAGCAACTCCAACTGAGGCTCCAACAACTACGGCCATCAACGCTTCACCA
AAATCGACCACTGAGCCAGGTGGCAGCAGTGGACAATGGCTTCAATCTGA
TTTGTTGATCTCATTGATCTTGCCAATGTTGAGCTATCTATTGAAGTATC
TCTTCTAGAATTTACATATACATTAATAATATGACATTGAAAATGACTCA
CGAAAGTAACGGCACATTTTTCATATTATGGACTGATGTCTTTCGTAACT
AAATGTTATCTATCACATATACATTTGTCAAAAGGAAAGTTTGTTTCTAA
AAATGACTTTAATTTATACGATATTATGATAAGCAGTAgcagatttttgg
attttttaaaaattttatacaaatttccaaatttttactttttagaaaag
aataaaattccaaaaaaataaataagaatgGATACATATCCTTTCCCCgt
ttgaaatcaaagtcagAACTTGGACTATAGAGATGCAGACAATCTTTCTG
GGATGACCTGacaggaccaaaaaaattagaataaatatttccaaatatat
aatattatctTTTTAAAAGCTTCTTATCTCCTTTTACTTCATATAATATC
TAGTTACAtgatcaaaaaaaagaaaaaataataacaatattattattaca
agtagaaaattattttgaaataatcatatttttgaaatcagtAAAAGCAA
TAATTATTTTGTCATAATCGGTAAtgattcaaattttaattttccaattt
tactttgatttctaaataaCTTGAAATTACATTGGATGATCCAAGATGAA
TGAACGATCCAGATTTCAGCTCATATTCAGCGTGAAGGGAGGGGGTTGAG
GAATTTGCAAAAGATATTACACGATTAGTATTTCAATAATTTACTAATAT
AATAATATTAGAAAGTAGATTGTTTTCAATACGTCCTAAAACAACCCCGA
AACTCTCAATTTATCTCTAGTTAACACGTAATGTTGAAGAGATTGATTCT
AATTATGTatgtaatttatctgaaaaactGTTTATTGGTAAGGCAAGTCG
CCTTTTGAATGATCTCCCAAAGGCTATTCGGGAAGAGGT Run BLAST on NCBI protein sequence of TCONS_00059980-protein >TCONS_00059980-protein ID=TCONS_00059980-protein|Name=TCONS_00059980-protein|organism=Clytia hemisphaerica|type=polypeptide|length=306bp
MYMKLLPIAVLLLQQSFVAAQKRVCVEGFIMDQFCIERKTLLDAGQFETL
KNPEQHSVHCLIDVPFCVDSGFSVLLPAPAGSENNYFEAYRFNEEDTQKL
VTLGKEHGACTVCKKQTDEFRKKGFRATIVGIEEGERYPKNLTIEAANLS
QKWVDPSSTDDGCSAFKDLITTTTPQPTTTTIAPVENTTATVNITVTTTA
VPTENTTTTMLPSNNTTTTMVPEANMTTTDNTTVTIPPKATDPVENTTTV
AITTTPPSLPTTTQRTIIKTEKRCVEGHIMDRKCIIDTVLLDAPTVKXQH
NDHHGT Run BLAST on NCBI transcript from alignment at scaffold_331:1081174..1083912 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059980 ID=TCONS_00059980|Name=TCONS_00059980|organism=Clytia hemisphaerica|type=transcript|length=2739bp|location=Sequence derived from alignment at scaffold_331:1081174..1083912 (Clytia hemisphaerica)
ACCTCTTCCCGAATAGCCTTTGGGAGATCATTCAAAAGGCGACTTGCCTT
ACCAATAAACagtttttcagataaattacatACATAATTAGAATCAATCT
CTTCAACATTACGTGTTAACTAGAGATAAATTGAGAGTTTCGGGGTTGTT
TTAGGACGTATTGAAAACAATCTACTTTCTAATATTATTATATTAGTAAA
TTATTGAAATACTAATCGTGTAATATCTTTTGCAAATTCCTCAACCCCCT
CCCTTCACGCTGAATATGAGCTGAAATCTGGATCGTTCATTCATCTTGGA
TCATCCAATGTAATTTCAAGttatttagaaatcaaagtaaaattggaaaa
ttaaaatttgaatcaTTACCGATTATGACAAAATAATTATTGCTTTTact
gatttcaaaaatatgattatttcaaaataattttctacttgtaataataa
tattgttattattttttcttttttttgatcaTGTAACTAGATATTATATG
AAGTAAAAGGAGATAAGAAGCTTTTAAAAagataatattatatatttgga
aatatttattctaatttttttggtcctgtCAGGTCATCCCAGAAAGATTG
TCTGCATCTCTATAGTCCAAGTTctgactttgatttcaaacGGGGAAAGG
ATATGTATCcattcttatttatttttttggaattttattcttttctaaaa
agtaaaaatttggaaatttgtataaaatttttaaaaaatccaaaaatctg
cTACTGCTTATCATAATATCGTATAAATTAAAGTCATTTTTAGAAACAAA
CTTTCCTTTTGACAAATGTATATGTGATAGATAACATTTAGTTACGAAAG
ACATCAGTCCATAATATGAAAAATGTGCCGTTACTTTCGTGAGTCATTTT
CAATGTCATATTATTAATGTATATGTAAATTCTAGAAGAGATACTTCAAT
AGATAGCTCAACATTGGCAAGATCAATGAGATCAACAAATCAGATTGAAG
CCATTGTCCACTGCTGCCACCTGGCTCAGTGGTCGATTTTGGTGAAGCGT
TGATGGCCGTAGTTGTTGGAGCCTCAGTTGGAGTTGCTGTCGTTGTTGCT
TCATCTTTACCAAAGTCATTTTCACATCCATCTTCAGCCACAGTCTCGTC
CCAGACTCTTGgagataatttcaatttcttaacTTTCAACTGATGAGGTG
GTGACGAGAATATGGTGGCAGTACCATAAATGGTAGCGCGATATCCTTTA
GTGATATTCCCAGTACTATCGCAACTACGGCAAACGCCAACTTTCTTTGC
ATCCTCGATAACCATTTGTAGACCTCGCTCATCCAATTCATATGCTTCAT
AGTATGCTGATGTTACAttttgatcttcatttttaagtAATACGCTGAAG
CCACTTACAACGCATACACGAACTCCAATCAGACAATGGACTGAATGGAC
TTCcggattttccaatgttttgacAGTTGGTGCATCCAAGAGGACGGTGT
CTATGATACATTTACGATCCATAATATGGCCCTCGACGCATCGTTTTTCG
GTCTTAATAATCGTGCGTTGGGTGGTAGTAGGGCGACTTGTGGGCGTTGT
AGTTATGGCAACAGTTGTTGTGTTTTCTACAGGATCTGTAGCTTTGGGCG
GGATCGTGACTGTTGTGTTGTCTGTTGTTGTCATGTTGTCTTTAGGTACC
ATGGTGGTCGTTGTGTTGTCNTTTGACAGTTGGTGCATCCAAGAGGACGG
TGTCTATGATACATTTACGATCCATAATATGGCCCTCGACGCATCGTTTT
TCGGTCTTAATAATCGTGCGTTGGGTGGTAGTAGGGAGACTTGGGGGCGT
TGTAGTTATGGCAACAGTTGTTGTGTTTTCTACAGGATCTGTAGCTTTGG
GCGGGATCGTGACTGTTGTGTTGTCTGTTGTTGTCATGTTGGCTTCGGGT
ACCATGGTGGTCGTTGTGTTGTTGCTTGGCAACATGGTGGTCGTTGTATT
TTCGGTTGGGACGGCCGTTGTTGTTACTGTAATGTTAACAGTTGCCGTTG
TGTTTTCAACTGGTGCGATCGTTGTAGTTGTAGGTTGAGGGGTGGTTGTC
GTTATGAGATCTTTGAAAGCAGAACATCCGTCATCAGTTGAAGATGGATC
CACCCATTTTTGTGAAAGGTTAGCTGCTTCGATTGTTAAATTTTTAGGAT
ATCTTTCTCCTTCTTCAATTCCAACGATAGTTGCTCGAAAtccttttttt
ctaaattcGTCAGTTTGTTTCTTACAGACTGTACAAGCACCATGCTCTTT
TCCCAATGTCACTAATTTTTGTGTATCTTCTTCATTGAATCGATAagctt
caaaataattattttcactaCCTGCAGGAGCTGGAAGCAATACACTAAAA
CCACTGTCAACGCAAAAAGGCACATCTATTAAACAATGAACGGAATGTTG
TTCAGGGTTTTTAAGCGTTTCGAACTGTCCGGCGTCGAGTAATGTTTTAC
GCTCGATGCAAAATTGATCCATAATGAAGCCTTCCACGCAAACACGTTTC
TGAGCTGCAACAAAAGATTGTTGGAGTAGCAACACTGCGATTGGCAAAAG
TTTCATATAcatttttattgatttattttgttttcctCCTGAAACAATAC
AAAAGAaggatttatttttcaaaacactaAATAATTACTGATGATGATAT
TAATATATCGAAACATATAATAGTTTAATATTaaaagtt Coding sequence (CDS) from alignment at scaffold_331:1081174..1083912 >TCONS_00059980 ID=TCONS_00059980|Name=TCONS_00059980|organism=Clytia hemisphaerica|type=CDS|length=921bp|location=Sequence derived from alignment at scaffold_331:1081174..1083912 (Clytia hemisphaerica)
TTAGGTACCATGGTGGTCGTTGTGTTGTCNTTTGACAGTTGGTGCATCCA
AGAGGACGGTGTCTATGATACATTTACGATCCATAATATGGCCCTCGACG
CATCGTTTTTCGGTCTTAATAATCGTGCGTTGGGTGGTAGTAGGGAGACT
TGGGGGCGTTGTAGTTATGGCAACAGTTGTTGTGTTTTCTACAGGATCTG
TAGCTTTGGGCGGGATCGTGACTGTTGTGTTGTCTGTTGTTGTCATGTTG
GCTTCGGGTACCATGGTGGTCGTTGTGTTGTTGCTTGGCAACATGGTGGT
CGTTGTATTTTCGGTTGGGACGGCCGTTGTTGTTACTGTAATGTTAACAG
TTGCCGTTGTGTTTTCAACTGGTGCGATCGTTGTAGTTGTAGGTTGAGGG
GTGGTTGTCGTTATGAGATCTTTGAAAGCAGAACATCCGTCATCAGTTGA
AGATGGATCCACCCATTTTTGTGAAAGGTTAGCTGCTTCGATTGTTAAAT
TTTTAGGATATCTTTCTCCTTCTTCAATTCCAACGATAGTTGCTCGAAAt
cctttttttctaaattcGTCAGTTTGTTTCTTACAGACTGTACAAGCACC
ATGCTCTTTTCCCAATGTCACTAATTTTTGTGTATCTTCTTCATTGAATC
GATAagcttcaaaataattattttcactaCCTGCAGGAGCTGGAAGCAAT
ACACTAAAACCACTGTCAACGCAAAAAGGCACATCTATTAAACAATGAAC
GGAATGTTGTTCAGGGTTTTTAAGCGTTTCGAACTGTCCGGCGTCGAGTA
ATGTTTTACGCTCGATGCAAAATTGATCCATAATGAAGCCTTCCACGCAA
ACACGTTTCTGAGCTGCAACAAAAGATTGTTGGAGTAGCAACACTGCGAT
TGGCAAAAGTTTCATATAcat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059980-exon-scaffold_331-1491911889:1081174..1083912 | TCONS_00059980-exon-scaffold_331-1491911889:1081174..1083912 | Clytia hemisphaerica | exon |
| TCONS_00059980-exon-scaffold_331-1510915933:1081174..1083912 | TCONS_00059980-exon-scaffold_331-1510915933:1081174..1083912 | Clytia hemisphaerica | exon |
| TCONS_00059980-exon-scaffold_331-1575043694:1081174..1083912 | TCONS_00059980-exon-scaffold_331-1575043694:1081174..1083912 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:1081174..1083912 . |
Blast
The following BLAST results are available for this feature:
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