|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059974 ID=TCONS_00059974|Name=TCONS_00059974|organism=Clytia hemisphaerica|type=transcript|length=764bp
TATAAACTGGTAATATGAtattcaaaatatcataaacatATATAGCCGAG
AAATACGCTATGCAACCAAAAATTCTTGTCAGAATATAACGATAAGATTC
TACGATACTGGACGAATGTGATGGAGTGATTGAAAACATGAGCCACTGGC
AATAAACTTGTGATCCGAAGCCGTGAATGATGGTCCATAGTTGAACAATG
AAAATGATTGCGTATTTTAAAGTTGTTTTGTCGCGCTCGAGGTTTACATT
TGTTGTAAATAACAACATTGATTGTATGGCTGCCACTATGAGTAATCCGT
ACAAATACAGgaagaaaatattcaaattattgGTCATCAGTTTCTTTTGG
ACAACGAAAAGAATGAGTGAAGATGTGGCTAGCACCATAATGGTGATCAG
AGTCAGCTGTGTTAAGGTCAAATGAAAATGTTGTACAGCTGTGAAATTGA
TGAGTATATCCATTTGGAAGTACTGGAACGTCAAGTAGACATCTGTACTG
AGTAATAACATGATATAAGAATCTTTAAGAATGTCTTTTGTCGTCCATAG
TTTCTGGCTTTTTTTATCCTTTTGGTTTTTCGGTTCAGGGTCAAATTCCG
TTTCGGGATAATCTAGGTCCGATGTTAAATTATGTAATCCGAAGTAACCG
ATAATCCATAGGATTCCCGATATTGTTGCCAAGAAAATCCCGATAAAATT
ATCTTGATTGATCCACCACGAAGTGCCAATTATGTTAAAATGTATTCCAT
GGAAAAGAAGAGGC Run BLAST on NCBI protein sequence of TCONS_00059974-protein >TCONS_00059974-protein ID=TCONS_00059974-protein|Name=TCONS_00059974-protein|organism=Clytia hemisphaerica|type=polypeptide|length=254bp
PLLFHGIHFNIIGTSWWINQDNFIGIFLATISGILWIIGYFGLHNLTSDL
DYPETEFDPEPKNQKDKKSQKLWTTKDILKDSYIMLLLSTDVYLTFQYFQ
MDILINFTAVQHFHLTLTQLTLITIMVLATSSLILFVVQKKLMTNNLNIF
FLYLYGLLIVAAIQSMLLFTTNVNLERDKTTLKYAIIFIVQLWTIIHGFG
SQVYCQWLMFSITPSHSSSIVESYRYILTRIFGCIAYFSAIYVYDILNII
LPVY Run BLAST on NCBI transcript from alignment at scaffold_331:972295..973058 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059974 ID=TCONS_00059974|Name=TCONS_00059974|organism=Clytia hemisphaerica|type=transcript|length=764bp|location=Sequence derived from alignment at scaffold_331:972295..973058 (Clytia hemisphaerica)
GCCTCTTCTTTTCCATGGAATACATTTTAACATAATTGGCACTTCGTGGT
GGATCAATCAAGATAATTTTATCGGGATTTTCTTGGCAACAATATCGGGA
ATCCTATGGATTATCGGTTACTTCGGATTACATAATTTAACATCGGACCT
AGATTATCCCGAAACGGAATTTGACCCTGAACCGAAAAACCAAAAGGATA
AAAAAAGCCAGAAACTATGGACGACAAAAGACATTCTTAAAGATTCTTAT
ATCATGTTATTACTCAGTACAGATGTCTACTTGACGTTCCAGTACTTCCA
AATGGATATACTCATCAATTTCACAGCTGTACAACATTTTCATTTGACCT
TAACACAGCTGACTCTGATCACCATTATGGTGCTAGCCACATCTTCACTC
ATTCTTTTCGTTGTCCAAAAGAAACTGATGACcaataatttgaatatttt
cttcCTGTATTTGTACGGATTACTCATAGTGGCAGCCATACAATCAATGT
TGTTATTTACAACAAATGTAAACCTCGAGCGCGACAAAACAACTTTAAAA
TACGCAATCATTTTCATTGTTCAACTATGGACCATCATTCACGGCTTCGG
ATCACAAGTTTATTGCCAGTGGCTCATGTTTTCAATCACTCCATCACATT
CGTCCAGTATCGTAGAATCTTATCGTTATATTCTGACAAGAATTTTTGGT
TGCATAGCGTATTTCTCGGCTATATatgtttatgatattttgaataTCAT
ATTACCAGTTTATA Coding sequence (CDS) from alignment at scaffold_331:972295..973058 >TCONS_00059974 ID=TCONS_00059974|Name=TCONS_00059974|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at scaffold_331:972295..973058 (Clytia hemisphaerica)
CCTCTTCTTTTCCATGGAATACATTTTAACATAATTGGCACTTCGTGGTG
GATCAATCAAGATAATTTTATCGGGATTTTCTTGGCAACAATATCGGGAA
TCCTATGGATTATCGGTTACTTCGGATTACATAATTTAACATCGGACCTA
GATTATCCCGAAACGGAATTTGACCCTGAACCGAAAAACCAAAAGGATAA
AAAAAGCCAGAAACTATGGACGACAAAAGACATTCTTAAAGATTCTTATA
TCATGTTATTACTCAGTACAGATGTCTACTTGACGTTCCAGTACTTCCAA
ATGGATATACTCATCAATTTCACAGCTGTACAACATTTTCATTTGACCTT
AACACAGCTGACTCTGATCACCATTATGGTGCTAGCCACATCTTCACTCA
TTCTTTTCGTTGTCCAAAAGAAACTGATGACcaataatttgaatattttc
ttcCTGTATTTGTACGGATTACTCATAGTGGCAGCCATACAATCAATGTT
GTTATTTACAACAAATGTAAACCTCGAGCGCGACAAAACAACTTTAAAAT
ACGCAATCATTTTCATTGTTCAACTATGGACCATCATTCACGGCTTCGGA
TCACAAGTTTATTGCCAGTGGCTCATGTTTTCAATCACTCCATCACATTC
GTCCAGTATCGTAGAATCTTATCGTTATATTCTGACAAGAATTTTTGGTT
GCATAGCGTATTTCTCGGCTATATatgtttatgatattttgaataTCATA
TTACCAGTTTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059974-exon-scaffold_331-1491911889:972295..973058 | TCONS_00059974-exon-scaffold_331-1491911889:972295..973058 | Clytia hemisphaerica | exon |
| TCONS_00059974-exon-scaffold_331-1510915933:972295..973058 | TCONS_00059974-exon-scaffold_331-1510915933:972295..973058 | Clytia hemisphaerica | exon |
| TCONS_00059974-exon-scaffold_331-1575043694:972295..973058 | TCONS_00059974-exon-scaffold_331-1575043694:972295..973058 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:972295..973058 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR020846 | MFS_dom |
Blast
The following BLAST results are available for this feature:
|
