TCONS_00059963 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059963
Unique NameTCONS_00059963
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1610

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059963 ID=TCONS_00059963|Name=TCONS_00059963|organism=Clytia hemisphaerica|type=transcript|length=1610bp
gctttgttaacaatatttttcatgagATATTTTTCTTCTACAGTTATACA
ATAAATAATTTGATTTCAATAAATTTCCACCTGCAAATCTACTAAATATG
TACATTataaattttcgtttttaaataaattctattgaaaaaatataCTT
AGTCATGAAAGGAATCACATCAATTCACTTGATGATTTCTTTCGGAACAT
GCCTTTCATTTTCTCTGATATTGACGCCCTACGCCCACCATGGGCGTAAA
GGGGTTGTGTGTTATGTACCGGTAGTGAGGCACGGCGACCAGCATTGAAT
TTCTTAGGCATTTCCGGTGAACAATCATCGCTGACTCCACTGTCATTGCT
ACTGTCCGATCTGGTACTATTTGAACGGGTTTTTTGAAGTGGTAGAGCAT
ATCCATTCAGTGTCAATGAATGGCTAATCAGAACAGGATCACCAATTTCT
TGTATACACATCGGGTGTAAAGGTGACGATGTTCGGCGGGAAGCTAATCG
TCGGGAATGTTTCGGTGTACTGGTTGATTCGGGAGATGAACTTTGTTCGA
AAAGTAATTGCGGGACTTTGACGATCGGNCGTTGATTCGGGAGATGAACT
CTGCTCGAAAAGTAATTGCGGGACTTTGACGATCGGTGTACTATCGGCGC
GTCCACGTTTTTGACTTGTGATAATTCGATTGGATTCGGGAGACATCGGT
GTTACAGGGGTCACTTCTGAGTCACTAAAACTTTCATTATTATTGTTCGT
GTCTATACTAACAGGTGCCGACAATTGTCGGTTTAATGTTTGTTTAGCAC
TCGTTCGCCGATAACTTGCTCGTAGTTTTTTCGATAAACTTAATTTTCGC
TTATCGTCTTTTAAAACAGGTACTTCAATTAGAGGCGGTGGTGGTATAAa
catatttaaaagtttttgaataatcTCAGTGACGCTTTCATAATCTTTAG
CACTCGATTCAACAAAAGCTGTAATAACATTTCCTTCGTGTAGATTAGCT
GCAAAGCTTAATGCCTCTGTGTATGGAACTTGACGATCAGATTCTAAGTC
ATTTTTATTTCCGACGAGCACGATTTTAACTTCAGCGCTTTTTTCTTTGA
CTTCTTTAATCTCGTCTATGAATTTCTTGGCACGTTCGTATGATTTCCTA
TCATTAATCGAGTAGGTGACAATAAAAGCGTTGCCTTTGGTTACCGATAA
TTTACGCATAGCTGGGAAGTCATCACTCCCTGCTGTGTCAACCAATAAGC
AAACGCACATGTTTCCACGATGTTCTACGACGTGCGTTAGATGATCTTCA
GCCGTCGGTTGGTAGTGTCgtaaaaagtctttttcaacaaattgaTTAAT
GATAGCTGATTTGCCAACTCGTTCTGCTCCCAAAAATGTGATACGATATT
CAAATACGTAACTGCTTTTACGTACGTTTAAATTCAAGTTACGGCTATTT
TTGCGTGATCTGCTAGCCATATTTGCGTGACGTTCGTGATATAGATTTGA
GAACTTTATGTCTTCGTGTGTCTCTCAATTAAGTTGTTGATAATGTCTGG
AAAAAACCCTCTCAGATAGCACTTGACTGTATTGGTCATAAATATCAACT
GACTCAAAAT
Run BLAST on NCBI

protein sequence of TCONS_00059963-protein

>TCONS_00059963-protein ID=TCONS_00059963-protein|Name=TCONS_00059963-protein|organism=Clytia hemisphaerica|type=polypeptide|length=343bp
MASRSRKNSRNLNLNVRKSSYVFEYRITFLGAERVGKSAIINQFVEKDFL
RHYQPTAEDHLTHVVEHRGNMCVCLLVDTAGSDDFPAMRKLSVTKGNAFI
VTYSINDRKSYERAKKFIDEIKEVKEKSAEVKIVLVGNKNDLESDRQVPY
TEALSFAANLHEGNVITAFVESSAKDYESVTEIIQKLLNMFIPPPPLIEV
PVLKDDKRKLSLSKKLRASYRRTSAKQTLNRQLSAPVSIDTNNNNESFSD
SEVTPVTPMSPESNRIITSQKRGRADSTPIVKVPQLLFEQSSSPESTXDR
QSPAITFRTKFISRINQYTETFPTISFPPNIVTFTPDVYTRNW
Run BLAST on NCBI

transcript from alignment at scaffold_331:636732..638341

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059963 ID=TCONS_00059963|Name=TCONS_00059963|organism=Clytia hemisphaerica|type=transcript|length=1610bp|location=Sequence derived from alignment at scaffold_331:636732..638341 (Clytia hemisphaerica)
ATTTTGAGTCAGTTGATATTTATGACCAATACAGTCAAGTGCTATCTGAG
AGGGTTTTTTCCAGACATTATCAACAACTTAATTGAGAGACACACGAAGA
CATAAAGTTCTCAAATCTATATCACGAACGTCACGCAAATATGGCTAGCA
GATCACGCAAAAATAGCCGTAACTTGAATTTAAACGTACGTAAAAGCAGT
TACGTATTTGAATATCGTATCACATTTTTGGGAGCAGAACGAGTTGGCAA
ATCAGCTATCATTAAtcaatttgttgaaaaagactttttacGACACTACC
AACCGACGGCTGAAGATCATCTAACGCACGTCGTAGAACATCGTGGAAAC
ATGTGCGTTTGCTTATTGGTTGACACAGCAGGGAGTGATGACTTCCCAGC
TATGCGTAAATTATCGGTAACCAAAGGCAACGCTTTTATTGTCACCTACT
CGATTAATGATAGGAAATCATACGAACGTGCCAAGAAATTCATAGACGAG
ATTAAAGAAGTCAAAGAAAAAAGCGCTGAAGTTAAAATCGTGCTCGTCGG
AAATAAAAATGACTTAGAATCTGATCGTCAAGTTCCATACACAGAGGCAT
TAAGCTTTGCAGCTAATCTACACGAAGGAAATGTTATTACAGCTTTTGTT
GAATCGAGTGCTAAAGATTATGAAAGCGTCACTGAgattattcaaaaact
tttaaatatgtTTATACCACCACCGCCTCTAATTGAAGTACCTGTTTTAA
AAGACGATAAGCGAAAATTAAGTTTATCGAAAAAACTACGAGCAAGTTAT
CGGCGAACGAGTGCTAAACAAACATTAAACCGACAATTGTCGGCACCTGT
TAGTATAGACACGAACAATAATAATGAAAGTTTTAGTGACTCAGAAGTGA
CCCCTGTAACACCGATGTCTCCCGAATCCAATCGAATTATCACAAGTCAA
AAACGTGGACGCGCCGATAGTACACCGATCGTCAAAGTCCCGCAATTACT
TTTCGAGCAGAGTTCATCTCCCGAATCAACGNCCGATCGTCAAAGTCCCG
CAATTACTTTTCGAACAAAGTTCATCTCCCGAATCAACCAGTACACCGAA
ACATTCCCGACGATTAGCTTCCCGCCGAACATCGTCACCTTTACACCCGA
TGTGTATACAAGAAATTGGTGATCCTGTTCTGATTAGCCATTCATTGACA
CTGAATGGATATGCTCTACCACTTCAAAAAACCCGTTCAAATAGTACCAG
ATCGGACAGTAGCAATGACAGTGGAGTCAGCGATGATTGTTCACCGGAAA
TGCCTAAGAAATTCAATGCTGGTCGCCGTGCCTCACTACCGGTACATAAC
ACACAACCCCTTTACGCCCATGGTGGGCGTAGGGCGTCAATATCAGAGAA
AATGAAAGGCATGTTCCGAAAGAAATCATCAAGTGAATTGATGTGATTCC
TTTCATGACTAAGtatattttttcaatagaatttatttaaaaacgaaaat
ttatAATGTACATATTTAGTAGATTTGCAGGTGGAAATTTATTGAAATCA
AATTATTTATTGTATAACTGTAGAAGAAAAATATctcatgaaaaatattg
ttaacaaagc

Coding sequence (CDS) from alignment at scaffold_331:636732..638341

>TCONS_00059963 ID=TCONS_00059963|Name=TCONS_00059963|organism=Clytia hemisphaerica|type=CDS|length=1032bp|location=Sequence derived from alignment at scaffold_331:636732..638341 (Clytia hemisphaerica)
ATGGCTAGCAGATCACGCAAAAATAGCCGTAACTTGAATTTAAACGTACG
TAAAAGCAGTTACGTATTTGAATATCGTATCACATTTTTGGGAGCAGAAC
GAGTTGGCAAATCAGCTATCATTAAtcaatttgttgaaaaagacttttta
cGACACTACCAACCGACGGCTGAAGATCATCTAACGCACGTCGTAGAACA
TCGTGGAAACATGTGCGTTTGCTTATTGGTTGACACAGCAGGGAGTGATG
ACTTCCCAGCTATGCGTAAATTATCGGTAACCAAAGGCAACGCTTTTATT
GTCACCTACTCGATTAATGATAGGAAATCATACGAACGTGCCAAGAAATT
CATAGACGAGATTAAAGAAGTCAAAGAAAAAAGCGCTGAAGTTAAAATCG
TGCTCGTCGGAAATAAAAATGACTTAGAATCTGATCGTCAAGTTCCATAC
ACAGAGGCATTAAGCTTTGCAGCTAATCTACACGAAGGAAATGTTATTAC
AGCTTTTGTTGAATCGAGTGCTAAAGATTATGAAAGCGTCACTGAgatta
ttcaaaaacttttaaatatgtTTATACCACCACCGCCTCTAATTGAAGTA
CCTGTTTTAAAAGACGATAAGCGAAAATTAAGTTTATCGAAAAAACTACG
AGCAAGTTATCGGCGAACGAGTGCTAAACAAACATTAAACCGACAATTGT
CGGCACCTGTTAGTATAGACACGAACAATAATAATGAAAGTTTTAGTGAC
TCAGAAGTGACCCCTGTAACACCGATGTCTCCCGAATCCAATCGAATTAT
CACAAGTCAAAAACGTGGACGCGCCGATAGTACACCGATCGTCAAAGTCC
CGCAATTACTTTTCGAGCAGAGTTCATCTCCCGAATCAACGNCCGATCGT
CAAAGTCCCGCAATTACTTTTCGAACAAAGTTCATCTCCCGAATCAACCA
GTACACCGAAACATTCCCGACGATTAGCTTCCCGCCGAACATCGTCACCT
TTACACCCGATGTGTATACAAGAAATTGGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037719XLOC_037719Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059963-proteinTCONS_00059963-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059963-exon-scaffold_331-1491911889:636732..638341TCONS_00059963-exon-scaffold_331-1491911889:636732..638341Clytia hemisphaericaexon
TCONS_00059963-exon-scaffold_331-1510915933:636732..638341TCONS_00059963-exon-scaffold_331-1510915933:636732..638341Clytia hemisphaericaexon
TCONS_00059963-exon-scaffold_331-1575043694:636732..638341TCONS_00059963-exon-scaffold_331-1575043694:636732..638341Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:636732..638341 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0506463	0.0493881	0.0573444	0	0.204898	0.0809566	0.0651138	0	0	0.0528644	0.205246	0.0337302	19.0647	14.7617	0.0143793	0.0308624	3.4218	5.26085	22.0467	18.2253	8.05519	7.52369	2.20666	3.69559	3.77918	6.33315	0	0.0741148	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005225Small_GTP-bd_dom
IPR001806Small_GTPase
IPR020849Small_GTPase_Ras
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
cellular_component GO:0016020 membrane
molecular_function GO:0003924 GTPase activity
molecular_function GO:0005525 GTP binding
Blast
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BLAST of TCONS_00059963 vs. Swiss-Prot (Human)
Match: DIRA2 (GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIRAS2 PE=1 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 5.092e-33
Identity = 67/167 (40.12%), Postives = 99/167 (59.28%), Query Frame = -3 
Query:  901 EYRITFLGAERVGKSAIINQFVEKDFLRHYQPTAEDHLTHVVEHRGNMCVCLLVDTAGSDDFPAMRKLSVTKGNAFIVTYSINDRKSYERAKKFIDEIKEVKEKSAEVKIVLVGNKNDLESDRQVPYTEALSFAANLHEGNVITAFVESSAKDYESVTEIIQKLLNM 1401
            +YR+   GA  VGKS+++ +FV+  F   Y PT ED    V+    ++C   + DT GS  FPAM++LS++KG+AFI+ YSI  R+S E  K   ++I E+K     + I+LVGNK D    R+V  +EA + A          AF+E+SAK   +V E+ Q+LLN+
Sbjct:    7 DYRVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCDKSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWK-----CAFMETSAKLNHNVKELFQELLNL 168
The following BLAST results are available for this feature:
BLAST of TCONS_00059963 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DIRA25.092e-3340.12GTP-binding protein Di-Ras2 OS=Homo sapiens GN=DIR... [more]
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