TCONS_00059957 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059957
Unique NameTCONS_00059957
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length616

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059957 ID=TCONS_00059957|Name=TCONS_00059957|organism=Clytia hemisphaerica|type=transcript|length=616bp
caattttccggggggcaattttccgggggcagttttccggggggcaattt
tctcgggggcaattttcctagaaccATTTTCTCGACACGAAAAAAAGCTG
AAGTGACTTCAATAGTTAGCAATTAATGTTCTTAATGATCAATCATCGAA
TCCGTAGTTGGTATTTAATCAAGTCCATAGAATTGTCCGATAAAACTGCA
TTCAAGGAATTTTTTGAACAATATTGTGAAATAGGAGTGCATTAGGACTG
ACGAGCTCTCATTGACAGTCTACACCACTAACCAAACCGGGAAAAACTTC
CCGAACGGGGAGAATTCACTCAAATTTTTTCTGTCCGTTTGAGAAGATTC
TTCCTCATCGGGAAGTTGACTGACTAGGTCCGCTCTTTTAGCTTATCTTT
TTAAGTCTGGTCGGACTTTGATGCTCTAATGCTGATCATGAACGCTAAAT
ACTTGAATAGTTTATATCTGAAAGGGTATCGGGCCCTATGATTGGTTCAC
CTATTTTTCAGGATCACTTTTCactgagaaaataaaaaatgatgatCTTC
TTTGGTCCGCCTAGTAGTACATACGCTTGGACAAATTGGTTACTTTGTGA
AGTGTTTGCAATAAAG
Run BLAST on NCBI

transcript from alignment at scaffold_331:543469..544084

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059957 ID=TCONS_00059957|Name=TCONS_00059957|organism=Clytia hemisphaerica|type=transcript|length=616bp|location=Sequence derived from alignment at scaffold_331:543469..544084 (Clytia hemisphaerica)
CTTTATTGCAAACACTTCACAAAGTAACCAATTTGTCCAAGCGTATGTAC
TACTAGGCGGACCAAAGAAGatcatcattttttattttctcagtGAAAAG
TGATCCTGAAAAATAGGTGAACCAATCATAGGGCCCGATACCCTTTCAGA
TATAAACTATTCAAGTATTTAGCGTTCATGATCAGCATTAGAGCATCAAA
GTCCGACCAGACTTAAAAAGATAAGCTAAAAGAGCGGACCTAGTCAGTCA
ACTTCCCGATGAGGAAGAATCTTCTCAAACGGACAGAAAAAATTTGAGTG
AATTCTCCCCGTTCGGGAAGTTTTTCCCGGTTTGGTTAGTGGTGTAGACT
GTCAATGAGAGCTCGTCAGTCCTAATGCACTCCTATTTCACAATATTGTT
CAAAAAATTCCTTGAATGCAGTTTTATCGGACAATTCTATGGACTTGATT
AAATACCAACTACGGATTCGATGATTGATCATTAAGAACATTAATTGCTA
ACTATTGAAGTCACTTCAGCTTTTTTTCGTGTCGAGAAAATggttctagg
aaaattgcccccgagaaaattgccccccggaaaactgcccccggaaaatt
gccccccggaaaattg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037713XLOC_037713Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059957-exon-scaffold_331-1491911889:543469..544084TCONS_00059957-exon-scaffold_331-1491911889:543469..544084Clytia hemisphaericaexon
TCONS_00059957-exon-scaffold_331-1510915933:543469..544084TCONS_00059957-exon-scaffold_331-1510915933:543469..544084Clytia hemisphaericaexon
TCONS_00059957-exon-scaffold_331-1575043694:543469..544084TCONS_00059957-exon-scaffold_331-1575043694:543469..544084Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:543469..544084 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.435845	0.170007	1.15801	1.83463	1.17552	0.553123	0.560347	0.629508	0.734556	0.818879	0.264941	1.10303	0.579733	0.180618	0.395979	1.64667	0.458062	0.402427	0.833962	0.484823	0.337119	0.493305	0	0.272597	0.187331	0.250768	0.239052	0.127561	0.0967507	0.295721
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059957 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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