TCONS_00059956 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059956
Unique NameTCONS_00059956
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length227

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059956 ID=TCONS_00059956|Name=TCONS_00059956|organism=Clytia hemisphaerica|type=transcript|length=227bp
gtttgaTTTCGATTAAAGTTCCATTGAGATTTGTTTAAATGAATGGTGTT
TTTaactattctgatttatcaatCCGAAAAGTTCAAATCttgatttattt
tattaaaatgtCCTCACCCCTCTTTAATCACAAAGTAAGGGCCCTACTTT
AAAACGAATCCTCCGAGACCTCTTTCAGACCCTTGTTAAGAGTCTCTATC
CCACTCAACGTACACTTTAGATTCTTG
Run BLAST on NCBI

transcript from alignment at scaffold_331:542754..542980

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059956 ID=TCONS_00059956|Name=TCONS_00059956|organism=Clytia hemisphaerica|type=transcript|length=227bp|location=Sequence derived from alignment at scaffold_331:542754..542980 (Clytia hemisphaerica)
CAAGAATCTAAAGTGTACGTTGAGTGGGATAGAGACTCTTAACAAGGGTC
TGAAAGAGGTCTCGGAGGATTCGTTTTAAAGTAGGGCCCTTACTTTGTGA
TTAAAGAGGGGTGAGGacattttaataaaataaatcaaGATTTGAACTTT
TCGGattgataaatcagaatagttAAAAACACCATTCATTTAAACAAATC
TCAATGGAACTTTAATCGAAAtcaaac
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037712XLOC_037712Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059956-exon-scaffold_331-1491911889:542754..542980TCONS_00059956-exon-scaffold_331-1491911889:542754..542980Clytia hemisphaericaexon
TCONS_00059956-exon-scaffold_331-1510915933:542754..542980TCONS_00059956-exon-scaffold_331-1510915933:542754..542980Clytia hemisphaericaexon
TCONS_00059956-exon-scaffold_331-1575043694:542754..542980TCONS_00059956-exon-scaffold_331-1575043694:542754..542980Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:542754..542980 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	2.45478	2.98846	0	0	0	1.86742	0	0	0.737937	1.47382	0	1.88751	0	0	1.70511	0	1.23254	0	0	0	0	0	0	0	0	0	1.25299
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059956 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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