TCONS_00059951 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059951
Unique NameTCONS_00059951
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length694

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059951 ID=TCONS_00059951|Name=TCONS_00059951|organism=Clytia hemisphaerica|type=transcript|length=694bp
TGCAACAATCAACCTCTAGTAGTCAACCCTggtgaaagttttgtaaaatg
aCGATATTTTACCATTTAAGTATCAACTGAAAAAGCTACTGACACAGCCG
GTTGGCTTCgtttcattttttcatcaaaacacttATAGTAAAGATGAATA
AGACTTCTGAGACAGCGTATCCACGTTTTCACATGACCGACTATCACCGG
ATAACACTGGTTACATACAATTTACTCATCAATGGAATATTAACTTTATC
TTTGAATCTATTTATCGTTATTGGTCTTATCAAGACTCAACCAGTTCGCA
AAAACAAATCAATACAACTTGTACTCCTTTTAAGCATGTCTGATATTGTT
GGAGCAATCTCAGCTTCTAGTCTAATCACGATTCTCCTAACGACATACTC
ATATGAGGTCAACAATGATTTTGAAATGGTAACTTTATTTTTCCTGGTCA
GCTTGGGACATTGCTCGAGTTACATCGTGGTGCTCATATCCTATGATCGA
TATTTATGCGTAAAACATAACAACAACACTACCTGGAAATTATCCTCAAG
AAAAATGAACTTTCTAACAACAAGCATTCTAGCTATATCATTATCTTTTG
GTATTCTTTTCGTGTCAGCTTCAATCTATAATTTCGAAACCACCGCCAAT
ATCATTGGCCTGGTGATTGACTTGTTGATATTTGCTTTCGCCAT
Run BLAST on NCBI

protein sequence of TCONS_00059951-protein

>TCONS_00059951-protein ID=TCONS_00059951-protein|Name=TCONS_00059951-protein|organism=Clytia hemisphaerica|type=polypeptide|length=183bp
MNKTSETAYPRFHMTDYHRITLVTYNLLINGILTLSLNLFIVIGLIKTQP
VRKNKSIQLVLLLSMSDIVGAISASSLITILLTTYSYEVNNDFEMVTLFF
LVSLGHCSSYIVVLISYDRYLCVKHNNNTTWKLSSRKMNFLTTSILAISL
SFGILFVSASIYNFETTANIIGLVIDLLIFAFA
Run BLAST on NCBI

transcript from alignment at scaffold_331:481382..482075

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059951 ID=TCONS_00059951|Name=TCONS_00059951|organism=Clytia hemisphaerica|type=transcript|length=694bp|location=Sequence derived from alignment at scaffold_331:481382..482075 (Clytia hemisphaerica)
ATGGCGAAAGCAAATATCAACAAGTCAATCACCAGGCCAATGATATTGGC
GGTGGTTTCGAAATTATAGATTGAAGCTGACACGAAAAGAATACCAAAAG
ATAATGATATAGCTAGAATGCTTGTTGTTAGAAAGTTCATTTTTCTTGAG
GATAATTTCCAGGTAGTGTTGTTGTTATGTTTTACGCATAAATATCGATC
ATAGGATATGAGCACCACGATGTAACTCGAGCAATGTCCCAAGCTGACCA
GGAAAAATAAAGTTACCATTTCAAAATCATTGTTGACCTCATATGAGTAT
GTCGTTAGGAGAATCGTGATTAGACTAGAAGCTGAGATTGCTCCAACAAT
ATCAGACATGCTTAAAAGGAGTACAAGTTGTATTGATTTGTTTTTGCGAA
CTGGTTGAGTCTTGATAAGACCAATAACGATAAATAGATTCAAAGATAAA
GTTAATATTCCATTGATGAGTAAATTGTATGTAACCAGTGTTATCCGGTG
ATAGTCGGTCATGTGAAAACGTGGATACGCTGTCTCAGAAGTCTTATTCA
TCTTTACTATaagtgttttgatgaaaaaatgaaacGAAGCCAACCGGCTG
TGTCAGTAGCTTTTTCAGTTGATACTTAAATGGTAAAATATCGtcatttt
acaaaactttcaccAGGGTTGACTACTAGAGGTTGATTGTTGCA

Coding sequence (CDS) from alignment at scaffold_331:481382..482075

>TCONS_00059951 ID=TCONS_00059951|Name=TCONS_00059951|organism=Clytia hemisphaerica|type=CDS|length=549bp|location=Sequence derived from alignment at scaffold_331:481382..482075 (Clytia hemisphaerica)
GGCGAAAGCAAATATCAACAAGTCAATCACCAGGCCAATGATATTGGCGG
TGGTTTCGAAATTATAGATTGAAGCTGACACGAAAAGAATACCAAAAGAT
AATGATATAGCTAGAATGCTTGTTGTTAGAAAGTTCATTTTTCTTGAGGA
TAATTTCCAGGTAGTGTTGTTGTTATGTTTTACGCATAAATATCGATCAT
AGGATATGAGCACCACGATGTAACTCGAGCAATGTCCCAAGCTGACCAGG
AAAAATAAAGTTACCATTTCAAAATCATTGTTGACCTCATATGAGTATGT
CGTTAGGAGAATCGTGATTAGACTAGAAGCTGAGATTGCTCCAACAATAT
CAGACATGCTTAAAAGGAGTACAAGTTGTATTGATTTGTTTTTGCGAACT
GGTTGAGTCTTGATAAGACCAATAACGATAAATAGATTCAAAGATAAAGT
TAATATTCCATTGATGAGTAAATTGTATGTAACCAGTGTTATCCGGTGAT
AGTCGGTCATGTGAAAACGTGGATACGCTGTCTCAGAAGTCTTATTCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037707XLOC_037707Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059951-proteinTCONS_00059951-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059951-exon-scaffold_331-1491911889:481382..482075TCONS_00059951-exon-scaffold_331-1491911889:481382..482075Clytia hemisphaericaexon
TCONS_00059951-exon-scaffold_331-1510915933:481382..482075TCONS_00059951-exon-scaffold_331-1510915933:481382..482075Clytia hemisphaericaexon
TCONS_00059951-exon-scaffold_331-1575043694:481382..482075TCONS_00059951-exon-scaffold_331-1575043694:481382..482075Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:481382..482075 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.165648	0	0.0986468	0	0.376183	0.880446	0.554779	0.381768	0.148221	0.438457	0	0	0	0	0	0	0.31104	0	0	0.103492	0	0	0	0.140186	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059951 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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