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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059949 ID=TCONS_00059949|Name=TCONS_00059949|organism=Clytia hemisphaerica|type=transcript|length=1517bp
tggagtaccgtgaaacaCCCTATCCGCGTTTCCACATGACCGATTATCAT
CGGATAATATTGGTTACATACAATTTACTCATCAATGGAATATTAACTTC
ATCTTTGAATCTATTTATCGTTATTGGTCTTATCAAGACTCGACAAACTC
GCAAAAACAAATCAATACAACTTGTATTCTTTCTGAGTATATCTGATATT
GTTGGAGCAATCTCAGTTTCTAGCTTGTTAACAGTAATTCTAACTGGATA
CAAAGATCGCGTCAATGAGACGCTTGAATTGGTAACAATGTTCCTATTAG
CATTTTGTGGGCATGTCTCGTGTTTCATAGTCGTTTTCATATCGTATGAT
AGATATGTTTGCGTTAAAACGAGCCGAAATAGAAACTCGAAACTATCTAC
AAAGAAATTCAACATAATCACTGGGGCATTAATGCTCGTATCATTCTTAG
ATGGAACAATCTCAGTTATATCGACAATATACAAATTCACAACCATTTCT
AGTTCCATTGTTTTAACTATTGATTTTATAGTCTTTGTTTTTGCTATAAG
ATGCTACATTGTATTCACTAGAACCATGACTCAGAAAGCTCAAATATCAC
AAGTCGGTCAAAATTCTGTCACCAAAGATCAGTATCTAGCTGGAATCGCC
AAGAGAATCTTGCTCACAATGTTAATCGTTGCAGTTATCTATCTAACATC
TATCATTTTGAATTTAGTGTTCCATCAGCATGCTTCAGAGCGTTGGAAAG
GACATCTCGAGTTCATCCTTATCGCTGGTGTATTCACAATACACACCAAT
GGTGCGGTCAATGCTGCTATTTTCATTTATGGTAATAAGAAGTTGAAGGA
TTTCTTTCTATATGGGTTGCTTAGATTGAAAGGAGACTCCATAATGAAGA
ATCGAGACCAAGCGAGGACATCGAGTTCAACAAACACAATTGAATCGTCA
CTTTGATGCGCCGATTTATTTCATGGAATTAAAACGTTGATAGACAGTGC
AAGGAAATCTATTTCAACCAACACCATTGAATCGGCACGTTGTTGGGTTG
GTTTCTCAAAAACACATTGCATCTTCTAAAAGGAAGCTTCATTGAGAGCA
ATGCAATCTGGTTCAATATACACCAATGAGACAGACATCGAGTTCAACAG
ACGCCATTAAATCGTCACTTTGATAAGTCAATTTTACGAAATAAAACCAG
AGGACCTTCCAATTTGAGAAGTTGCTGTCTCAGACACACAAACACATCCA
GTTGTTAGTTGGACGGGTTCGTGTCATGAAAATCAAACACATTGCTTACA
CAAACTACATAGATAAGCAGTACCAAGGTTTAATTAGTTAAACCCTTTCA
GTACCACTGGCATCGTGTGATCGCAAGATATTTTGGTCCACCAGAAGATT
TAGACCTAAAACACCACTTAGGTCACGCTGTTTTTTACCCCACCCGAATA
AAAGGTGGAAGTGGAAAATTTTTCGAACAATGTCTTGATTTTATGTACAT
CACAGAACAGATTATTA Run BLAST on NCBI protein sequence of TCONS_00059949-protein >TCONS_00059949-protein ID=TCONS_00059949-protein|Name=TCONS_00059949-protein|organism=Clytia hemisphaerica|type=polypeptide|length=317bp
EYRETPYPRFHMTDYHRIILVTYNLLINGILTSSLNLFIVIGLIKTRQTR
KNKSIQLVFFLSISDIVGAISVSSLLTVILTGYKDRVNETLELVTMFLLA
FCGHVSCFIVVFISYDRYVCVKTSRNRNSKLSTKKFNIITGALMLVSFLD
GTISVISTIYKFTTISSSIVLTIDFIVFVFAIRCYIVFTRTMTQKAQISQ
VGQNSVTKDQYLAGIAKRILLTMLIVAVIYLTSIILNLVFHQHASERWKG
HLEFILIAGVFTIHTNGAVNAAIFIYGNKKLKDFFLYGLLRLKGDSIMKN
RDQARTSSSTNTIESSL Run BLAST on NCBI transcript from alignment at scaffold_331:466754..468270 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059949 ID=TCONS_00059949|Name=TCONS_00059949|organism=Clytia hemisphaerica|type=transcript|length=1517bp|location=Sequence derived from alignment at scaffold_331:466754..468270 (Clytia hemisphaerica)
TAATAATCTGTTCTGTGATGTACATAAAATCAAGACATTGTTCGAAAAAT
TTTCCACTTCCACCTTTTATTCGGGTGGGGTAAAAAACAGCGTGACCTAA
GTGGTGTTTTAGGTCTAAATCTTCTGGTGGACCAAAATATCTTGCGATCA
CACGATGCCAGTGGTACTGAAAGGGTTTAACTAATTAAACCTTGGTACTG
CTTATCTATGTAGTTTGTGTAAGCAATGTGTTTGATTTTCATGACACGAA
CCCGTCCAACTAACAACTGGATGTGTTTGTGTGTCTGAGACAGCAACTTC
TCAAATTGGAAGGTCCTCTGGTTTTATTTCGTAAAATTGACTTATCAAAG
TGACGATTTAATGGCGTCTGTTGAACTCGATGTCTGTCTCATTGGTGTAT
ATTGAACCAGATTGCATTGCTCTCAATGAAGCTTCCTTTTAGAAGATGCA
ATGTGTTTTTGAGAAACCAACCCAACAACGTGCCGATTCAATGGTGTTGG
TTGAAATAGATTTCCTTGCACTGTCTATCAACGTTTTAATTCCATGAAAT
AAATCGGCGCATCAAAGTGACGATTCAATTGTGTTTGTTGAACTCGATGT
CCTCGCTTGGTCTCGATTCTTCATTATGGAGTCTCCTTTCAATCTAAGCA
ACCCATATAGAAAGAAATCCTTCAACTTCTTATTACCATAAATGAAAATA
GCAGCATTGACCGCACCATTGGTGTGTATTGTGAATACACCAGCGATAAG
GATGAACTCGAGATGTCCTTTCCAACGCTCTGAAGCATGCTGATGGAACA
CTAAATTCAAAATGATAGATGTTAGATAGATAACTGCAACGATTAACATT
GTGAGCAAGATTCTCTTGGCGATTCCAGCTAGATACTGATCTTTGGTGAC
AGAATTTTGACCGACTTGTGATATTTGAGCTTTCTGAGTCATGGTTCTAG
TGAATACAATGTAGCATCTTATAGCAAAAACAAAGACTATAAAATCAATA
GTTAAAACAATGGAACTAGAAATGGTTGTGAATTTGTATATTGTCGATAT
AACTGAGATTGTTCCATCTAAGAATGATACGAGCATTAATGCCCCAGTGA
TTATGTTGAATTTCTTTGTAGATAGTTTCGAGTTTCTATTTCGGCTCGTT
TTAACGCAAACATATCTATCATACGATATGAAAACGACTATGAAACACGA
GACATGCCCACAAAATGCTAATAGGAACATTGTTACCAATTCAAGCGTCT
CATTGACGCGATCTTTGTATCCAGTTAGAATTACTGTTAACAAGCTAGAA
ACTGAGATTGCTCCAACAATATCAGATATACTCAGAAAGAATACAAGTTG
TATTGATTTGTTTTTGCGAGTTTGTCGAGTCTTGATAAGACCAATAACGA
TAAATAGATTCAAAGATGAAGTTAATATTCCATTGATGAGTAAATTGTAT
GTAACCAATATTATCCGATGATAATCGGTCATGTGGAAACGCGGATAGGG
tgtttcacggtactcca Coding sequence (CDS) from alignment at scaffold_331:466754..468270 >TCONS_00059949 ID=TCONS_00059949|Name=TCONS_00059949|organism=Clytia hemisphaerica|type=CDS|length=954bp|location=Sequence derived from alignment at scaffold_331:466754..468270 (Clytia hemisphaerica)
TCAAAGTGACGATTCAATTGTGTTTGTTGAACTCGATGTCCTCGCTTGGT
CTCGATTCTTCATTATGGAGTCTCCTTTCAATCTAAGCAACCCATATAGA
AAGAAATCCTTCAACTTCTTATTACCATAAATGAAAATAGCAGCATTGAC
CGCACCATTGGTGTGTATTGTGAATACACCAGCGATAAGGATGAACTCGA
GATGTCCTTTCCAACGCTCTGAAGCATGCTGATGGAACACTAAATTCAAA
ATGATAGATGTTAGATAGATAACTGCAACGATTAACATTGTGAGCAAGAT
TCTCTTGGCGATTCCAGCTAGATACTGATCTTTGGTGACAGAATTTTGAC
CGACTTGTGATATTTGAGCTTTCTGAGTCATGGTTCTAGTGAATACAATG
TAGCATCTTATAGCAAAAACAAAGACTATAAAATCAATAGTTAAAACAAT
GGAACTAGAAATGGTTGTGAATTTGTATATTGTCGATATAACTGAGATTG
TTCCATCTAAGAATGATACGAGCATTAATGCCCCAGTGATTATGTTGAAT
TTCTTTGTAGATAGTTTCGAGTTTCTATTTCGGCTCGTTTTAACGCAAAC
ATATCTATCATACGATATGAAAACGACTATGAAACACGAGACATGCCCAC
AAAATGCTAATAGGAACATTGTTACCAATTCAAGCGTCTCATTGACGCGA
TCTTTGTATCCAGTTAGAATTACTGTTAACAAGCTAGAAACTGAGATTGC
TCCAACAATATCAGATATACTCAGAAAGAATACAAGTTGTATTGATTTGT
TTTTGCGAGTTTGTCGAGTCTTGATAAGACCAATAACGATAAATAGATTC
AAAGATGAAGTTAATATTCCATTGATGAGTAAATTGTATGTAACCAATAT
TATCCGATGATAATCGGTCATGTGGAAACGCGGATAGGGtgtttcacggt
actc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059949-exon-scaffold_331-1491911889:466754..468270 | TCONS_00059949-exon-scaffold_331-1491911889:466754..468270 | Clytia hemisphaerica | exon |
| TCONS_00059949-exon-scaffold_331-1510915933:466754..468270 | TCONS_00059949-exon-scaffold_331-1510915933:466754..468270 | Clytia hemisphaerica | exon |
| TCONS_00059949-exon-scaffold_331-1575043694:466754..468270 | TCONS_00059949-exon-scaffold_331-1575043694:466754..468270 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:466754..468270 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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