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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059946 ID=TCONS_00059946|Name=TCONS_00059946|organism=Clytia hemisphaerica|type=transcript|length=1404bp
AGATGATCAATAATTAACTTATACATGAACAAAGCACATTCCCAATTCTT
AGGTGGGTATTCAAGCCGTGATTCATTaataatatattcaaaaaaatcct
ttaaatcTGGATCTGTGTTTTCATTCTCAATATCTGATGCTCgatcaaat
atattttcatgtTCTATGATTGCCTCTATATCATCATGTGGTACTTGAAG
TCCACACTCTTCGTAATCAACAGTTTCTggtaaaaaatataattcatcTG
GTTTTCCAGAAACCTCGCAATAATTGGAATGTCGTATGTAATGATTATTC
CATTCAATTTTTACTTTATCAAGCTCAGTCTGTAAGAATTTTGAGTAAAC
AAACCAAACACAGGCTTTGTGATTCTCATTGCCAGGTATCAAATAGCCAT
CATCGACTAATTCTTTGAAATATGTTATTATCCAATTGGTAAAACCTCTT
CTTTGGTGAGACCACCAATTTTCAATCCTTTGGTTCCTTATAGATTGCCC
ATATTGGTGAGCATTTTCATTATCATGGAATGCACACTGGATAGCTGCCA
CCAGTCCATTTTCGGTTCCACAATCTGTTCGGAATTTCATCGGGAGAACA
TTCAACTGTTTTACTGTGCGAAGAAAATACATAGCTGGCATGATGGGATT
ATTGTTAGTTTTGCACACTTCTAACCAAAGAATTTTCCGTGAAAATCCAT
CCACACAACCATGGATAGGTAAGCCATACGGCTTAAGTTTGTCGTAACCA
TCCATGTGCCAAGCACTGTTAGGTCCACCTGAGCGATACACTCTCCTCTG
AAGCTTTCTAGACTTTCTTTTCTCTGTTCCTTCAGGATCTATTTCTTTTA
GAATTTCCATGACAGTATCACGTGGAACTGTAATGTTATATGTTGTACGT
AGCTTGTTCCACATTCCTCTGTATCCGAGTTGACAAGAAGGACCTTGTAT
CTCAGTTCTAATGATCTGTCGAAGCTGGCCAAGATTGATGTTATCGTCTC
TTTTTTTGAGATTTAGGGCTGATAGTCGTCTTTTTAATGTCCTTAAACTC
ATGTTGATATTGTGCTTACGAGTTAAAAAACATAGGATGGTTGAATATTG
AAAGCCCCTTCGAAAATAATACTCAATAATTTCTTCTTCGCTGTCTCCTA
AGTTTGAAATATCCATTGGTCTTTTCTTTGTACCACAACCAGTGCAAAAC
ACATCATCATCTGAAAATGCTCTTCCACATTGATGACAATACATGATTTT
AAGTCATTGACATTCTTGTTGCATTAGCATCAGGGAAGAAGTGGTCCGGT
GGTTATAACTACAAGCCATGATGGGATGGAATTCCTGATGGGATCCCCAC
CAGCCAGCCAGTGGGACCAGACTTTTGAATGGCTCAGTCGGGTCTTAAAA
GAAC Run BLAST on NCBI protein sequence of TCONS_00059946-protein >TCONS_00059946-protein ID=TCONS_00059946-protein|Name=TCONS_00059946-protein|organism=Clytia hemisphaerica|type=polypeptide|length=414bp
MYCHQCGRAFSDDDVFCTGCGTKKRPMDISNLGDSEEEIIEYYFRRGFQY
STILCFLTRKHNINMSLRTLKRRLSALNLKKRDDNINLGQLRQIIRTEIQ
GPSCQLGYRGMWNKLRTTYNITVPRDTVMEILKEIDPEGTEKRKSRKLQR
RVYRSGGPNSAWHMDGYDKLKPYGLPIHGCVDGFSRKILWLEVCKTNNNP
IMPAMYFLRTVKQLNVLPMKFRTDCGTENGLVAAIQCAFHDNENAHQYGQ
SIRNQRIENWWSHQRRGFTNWIITYFKELVDDGYLIPGNENHKACVWFVY
SKFLQTELDKVKIEWNNHYIRHSNYCEVSGKPDELYFLPETVDYEECGLQ
VPHDDIEAIIEHENIFDRASDIENENTDPDLKDFFEYIINESRLEYPPKN
WECALFMYKLIIDH Run BLAST on NCBI transcript from alignment at scaffold_331:395723..397126 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059946 ID=TCONS_00059946|Name=TCONS_00059946|organism=Clytia hemisphaerica|type=transcript|length=1404bp|location=Sequence derived from alignment at scaffold_331:395723..397126 (Clytia hemisphaerica)
GTTCTTTTAAGACCCGACTGAGCCATTCAAAAGTCTGGTCCCACTGGCTG
GCTGGTGGGGATCCCATCAGGAATTCCATCCCATCATGGCTTGTAGTTAT
AACCACCGGACCACTTCTTCCCTGATGCTAATGCAACAAGAATGTCAATG
ACTTAAAATCATGTATTGTCATCAATGTGGAAGAGCATTTTCAGATGATG
ATGTGTTTTGCACTGGTTGTGGTACAAAGAAAAGACCAATGGATATTTCA
AACTTAGGAGACAGCGAAGAAGAAATTATTGAGTATTATTTTCGAAGGGG
CTTTCAATATTCAACCATCCTATGTTTTTTAACTCGTAAGCACAATATCA
ACATGAGTTTAAGGACATTAAAAAGACGACTATCAGCCCTAAATCTCAAA
AAAAGAGACGATAACATCAATCTTGGCCAGCTTCGACAGATCATTAGAAC
TGAGATACAAGGTCCTTCTTGTCAACTCGGATACAGAGGAATGTGGAACA
AGCTACGTACAACATATAACATTACAGTTCCACGTGATACTGTCATGGAA
ATTCTAAAAGAAATAGATCCTGAAGGAACAGAGAAAAGAAAGTCTAGAAA
GCTTCAGAGGAGAGTGTATCGCTCAGGTGGACCTAACAGTGCTTGGCACA
TGGATGGTTACGACAAACTTAAGCCGTATGGCTTACCTATCCATGGTTGT
GTGGATGGATTTTCACGGAAAATTCTTTGGTTAGAAGTGTGCAAAACTAA
CAATAATCCCATCATGCCAGCTATGTATTTTCTTCGCACAGTAAAACAGT
TGAATGTTCTCCCGATGAAATTCCGAACAGATTGTGGAACCGAAAATGGA
CTGGTGGCAGCTATCCAGTGTGCATTCCATGATAATGAAAATGCTCACCA
ATATGGGCAATCTATAAGGAACCAAAGGATTGAAAATTGGTGGTCTCACC
AAAGAAGAGGTTTTACCAATTGGATAATAACATATTTCAAAGAATTAGTC
GATGATGGCTATTTGATACCTGGCAATGAGAATCACAAAGCCTGTGTTTG
GTTTGTTTACTCAAAATTCTTACAGACTGAGCTTGATAAAGTAAAAATTG
AATGGAATAATCATTACATACGACATTCCAATTATTGCGAGGTTTCTGGA
AAACCAgatgaattatattttttaccAGAAACTGTTGATTACGAAGAGTG
TGGACTTCAAGTACCACATGATGATATAGAGGCAATCATAGAacatgaaa
atatatttgatcGAGCATCAGATATTGAGAATGAAAACACAGATCCAgat
ttaaaggatttttttgaatatattattAATGAATCACGGCTTGAATACCC
ACCTAAGAATTGGGAATGTGCTTTGTTCATGTATAAGTTAATTATTGATC
ATCT Coding sequence (CDS) from alignment at scaffold_331:395723..397126 >TCONS_00059946 ID=TCONS_00059946|Name=TCONS_00059946|organism=Clytia hemisphaerica|type=CDS|length=1242bp|location=Sequence derived from alignment at scaffold_331:395723..397126 (Clytia hemisphaerica)
ATGTATTGTCATCAATGTGGAAGAGCATTTTCAGATGATGATGTGTTTTG
CACTGGTTGTGGTACAAAGAAAAGACCAATGGATATTTCAAACTTAGGAG
ACAGCGAAGAAGAAATTATTGAGTATTATTTTCGAAGGGGCTTTCAATAT
TCAACCATCCTATGTTTTTTAACTCGTAAGCACAATATCAACATGAGTTT
AAGGACATTAAAAAGACGACTATCAGCCCTAAATCTCAAAAAAAGAGACG
ATAACATCAATCTTGGCCAGCTTCGACAGATCATTAGAACTGAGATACAA
GGTCCTTCTTGTCAACTCGGATACAGAGGAATGTGGAACAAGCTACGTAC
AACATATAACATTACAGTTCCACGTGATACTGTCATGGAAATTCTAAAAG
AAATAGATCCTGAAGGAACAGAGAAAAGAAAGTCTAGAAAGCTTCAGAGG
AGAGTGTATCGCTCAGGTGGACCTAACAGTGCTTGGCACATGGATGGTTA
CGACAAACTTAAGCCGTATGGCTTACCTATCCATGGTTGTGTGGATGGAT
TTTCACGGAAAATTCTTTGGTTAGAAGTGTGCAAAACTAACAATAATCCC
ATCATGCCAGCTATGTATTTTCTTCGCACAGTAAAACAGTTGAATGTTCT
CCCGATGAAATTCCGAACAGATTGTGGAACCGAAAATGGACTGGTGGCAG
CTATCCAGTGTGCATTCCATGATAATGAAAATGCTCACCAATATGGGCAA
TCTATAAGGAACCAAAGGATTGAAAATTGGTGGTCTCACCAAAGAAGAGG
TTTTACCAATTGGATAATAACATATTTCAAAGAATTAGTCGATGATGGCT
ATTTGATACCTGGCAATGAGAATCACAAAGCCTGTGTTTGGTTTGTTTAC
TCAAAATTCTTACAGACTGAGCTTGATAAAGTAAAAATTGAATGGAATAA
TCATTACATACGACATTCCAATTATTGCGAGGTTTCTGGAAAACCAgatg
aattatattttttaccAGAAACTGTTGATTACGAAGAGTGTGGACTTCAA
GTACCACATGATGATATAGAGGCAATCATAGAacatgaaaatatatttga
tcGAGCATCAGATATTGAGAATGAAAACACAGATCCAgatttaaaggatt
tttttgaatatattattAATGAATCACGGCTTGAATACCCACCTAAGAAT
TGGGAATGTGCTTTGTTCATGTATAAGTTAATTATTGATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059946-exon-scaffold_331-1491911889:395723..397126 | TCONS_00059946-exon-scaffold_331-1491911889:395723..397126 | Clytia hemisphaerica | exon |
| TCONS_00059946-exon-scaffold_331-1510915933:395723..397126 | TCONS_00059946-exon-scaffold_331-1510915933:395723..397126 | Clytia hemisphaerica | exon |
| TCONS_00059946-exon-scaffold_331-1575043694:395723..397126 | TCONS_00059946-exon-scaffold_331-1575043694:395723..397126 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:395723..397126 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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