TCONS_00059940 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059940
Unique NameTCONS_00059940
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length301

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059940 ID=TCONS_00059940|Name=TCONS_00059940|organism=Clytia hemisphaerica|type=transcript|length=301bp
AAATGAGGCTATTTCAAGATGGTGTCTGACAGGGTGGCGCCGATAAGCCC
TTTTGACCGTTTTGGACTGAAATGGCTTAATTTTCATAgataaatgtatc
aaaaatgtccttattgtctatttttttaatcattatatGCTGAAAAAttg
tgtacaaaatttgagctttttagttcaattttacCAGGAGAAACAGGCAA
AAGAAACTTGCAAAATCAGACAAAACCGCGATACAAGTTGCAACATGGAG
AATGCTCAAAATGCCTTGCgacaactttttgttttgatttcactttgtat
t
Run BLAST on NCBI

transcript from alignment at scaffold_331:193753..194053

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059940 ID=TCONS_00059940|Name=TCONS_00059940|organism=Clytia hemisphaerica|type=transcript|length=301bp|location=Sequence derived from alignment at scaffold_331:193753..194053 (Clytia hemisphaerica)
aatacaaagtgaaatcaaaacaaaaagttgtcGCAAGGCATTTTGAGCAT
TCTCCATGTTGCAACTTGTATCGCGGTTTTGTCTGATTTTGCAAGTTTCT
TTTGCCTGTTTCTCCTGgtaaaattgaactaaaaagctcaaattttgtac
acaaTTTTTCAGCatataatgattaaaaaaatagacaataaggacatttt
tgatacatttatcTATGAAAATTAAGCCATTTCAGTCCAAAACGGTCAAA
AGGGCTTATCGGCGCCACCCTGTCAGACACCATCTTGAAATAGCCTCATT
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037696XLOC_037696Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059940-exon-scaffold_331-1491911889:193753..194053TCONS_00059940-exon-scaffold_331-1491911889:193753..194053Clytia hemisphaericaexon
TCONS_00059940-exon-scaffold_331-1510915933:193753..194053TCONS_00059940-exon-scaffold_331-1510915933:193753..194053Clytia hemisphaericaexon
TCONS_00059940-exon-scaffold_331-1575043694:193753..194053TCONS_00059940-exon-scaffold_331-1575043694:193753..194053Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:193753..194053 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.07267	0.425278	1.8656	2.57302	1.09589	1.2313	3.46619	2.44805	1.73716	1.20605	5.0727	1.28253	1.79305	2.74204	0.4374	0.523587	0.611204	1.18539	0	0.856861	0.398433	1.17185	0.441604	1.20445	1.07918	5.43698	0.633967	1.33639	1.52295	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059940 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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