|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059933 ID=TCONS_00059933|Name=TCONS_00059933|organism=Clytia hemisphaerica|type=transcript|length=4207bp
NNTTCCTCGGACACAGTATACCAGCGATTTCATGAGCGAGAGGTTGATCT
TTCTCTTAACCCACGACGAAACAAGGCTGAcattagtttttcttttgtca
gcgtcaattaagcataaaaaagaaatgatttcgtcagttttatgcattaa
tttgcgagatattctattcgccaaCGAGCGCAGTTTttgtagactagtcg
gaatacctTCTTTTACTCGCgagattgatggtaacttttcatcttcgtta
tttttaaaatgaagcacaaccaaaaaaaaaacaaagcctcaaaaagttgc
gtatttccagtgagtaaaccaTTCTGACAATTAGCAAAATTGATGATGGt
gatttttttcggtcaggcatgtctcgtattgggggttctagtcttgaacc
ctaagcctacgcgagattgaagcgtttgggtaaatgagacaaaacttgaa
aaaagctgatgttttgaagcgcttccaTGTGATCAAAATATTGCTTTTTG
TGACGGACTGATTAGGATACCTTTGGCGCAATCTCTCCTACTTAGGAGAG
TATCTTAAATTGGATACAAAAAAGTATCCGAAATAGCAATcaacatccta
attaggatactaaaaatcaaaaaacctgTATTTTTCACCAACCGGAGACA
TTTGCGCTATGTTACCACTTCCAAGATGTAAATAATAAGCAAATTAGATT
GTGTACTTAATTTCATCAAGTTTGGCTGGCGGAATGCAAAACTATAGCCC
AAAACCACTCAAATGTGCTAACTAGCATACGCGaacactttttttcttct
gtACGACTACCATTTGAAATTCGGACCGTAGCAGGCCCTtccgtaaaaag
aaaaacaaatctttagcttgtgttcacaaaattgtaggCTCTGAACGGCA
GATTATTAATGATGTTAATTTTCAAGGAACCCGCCAgagaaattacttga
aattttggtcagtgTGCAAATCTCGATGAAGAAAAGGTTTGCATAGTTTT
CCAAACGTGGATCGAAGCAGTAACCTCAAAAATTCAGGTCAAAGTGTCAG
CTCTCCTATCTAGGATACCTAAATCTCCAAATTAGGATATAACTCTCCTA
GTTAGGAGATATTGGCTGaaggtatcctaatttgcacttgttcttgactg
ttatattatttaaagattttctttaaaaaactcatTGGCTTTCAGGAAAA
CCCAAATGGGCTAAATGgtcccgctaaaatttctacgatcaaattaaaaa
tatttcaattagcAGTgtcctaaaaatgaaataaaagaaaaatcaatccC
AGAATGTTCAGCTAGACATCTGTTCCTGTGAACAGTTATGAACGCTGAGT
TAGGCACGAGAAGAACTCTACAAAGAGGAGGTTAACCAGAGAGGAGACAG
GGGTGGTTGGTTGGTTTCTATCAATATTTCTGGAAGGAAGTTTTCccatt
gaaatattttcaatttttaaaggaAGATTTTGATGTGAACTGGACAGCAA
TCAATcggtttttcctttttccacCTCAAAGATTCATTGCAAAGGAAGTA
AGAGAATAATAGACATGAAGATAGCTTTCTGTAAAACAAGATAATACTCT
ATGATGATAACAACAATAAAAAGGGGTTGAAATCCTCGAGAAAGATAATA
GagcaaaaaattgcaaagaaaCTGAGACTATATTTTACAAAGCATTGCTT
ACCTTGTATCGACAAAATACTTTCCAAATCATAGGACACCATTACATTCA
TTTCTTCCTTTTCCAGTCTTGATTCGTTGACTTGGCTTGAATTTCTTCTT
TCACTTCGTTTTTCCTTGCTTGAGTAGCCAACCAGATAAAAATTCATAGC
GAGCTGCATAGATCCACCTAAAACTTATTTGATTGAAGTAAATCaataac
aaaaatttgaatgCTATTTTGAATGAAATCTTGCAACGGAAATACTTTTG
GTTTATAAAGGGAAAAACATATCCATAGATAGAATGATAACTCCATAACT
TAGATTAAAGACAAATGCATCTTAAAGAAACTTTGAGTGACCTGCTAAGA
AAAGTCTCCCACCCCTGTGTTGAAAAATGAAGTGGACTTCGAGAATTTTC
TACGGAAAATATTTCCAAGACCTGTCCAGATTGCACATTCGAAAAAGAGT
CACGCGCGTGAATTTACACtgtcaaaaaaagaaagaaattgaaacaaGGC
TCTATTTATACTAGTGCAAggagaacaataaaaaatttcgaaaaatcacG
ACCTTAGCCAGCTCGAGTTACTTTTAATCACATAGCAGAACCTTCATTGC
CACCATTTTTTTACTGCTTCCGGacgtttgttttgaattttccttACATC
CAAACCCTATGACCCCTATACTTTTCAGAAAGGAATTTTTATTATCTTTC
CGAAAATCATACTTTAATCAGATTAAatttcgtgagcaaaaaaaatcaaa
agattttcaggatTTAATTTCCCGAGTCAGagttttcaataattttgcgt
cgatttaattttgcgaataagcctgaaaacagctgaaaacagccattttt
gccacaaatggaGACTTTGCAATGGTTTCTCTCAGAAAATGCGATAAAAG
AAAAAtctgtggtggatttaattttgtgagtcaggaatctcacgcATTTT
CGCGAGTTTCAATTTCccgaaaaaggcaaaaattcgCAAATTGTGAAAGT
CTtgcgaaagttaatccaattaaagtagccTGATCCTTTCAGTATCAAAA
CATAGCTTGGAATCTGAGCTCAAAGAAGATTCTCTCTCAGGACGCGTCCC
TGGTGGACGTAAGAGTTAACAAtgataatttttgagaaattaaattaaat
ttttacttttatgagAAATAATATGTATGTAAACGATTTCTTGTATTTCG
AAAGGAAATCGAACAATAATATTTTCTTGTAGCTATAATATTGAAcagaa
aattaattgaaataaaatattttcttgtattttcaatggaaaattatGTA
GAGAAAATGTCAGGGTAACTGCAGGGTAAAAGCCAACTGTCCCTTGAACC
GATCGTGTTTAGTTGAGCGATCAGTATACCAAGCCACAGTGACATTAGAG
GAAGAACCAGATTACGACGAGAAGTTTTATATCGGACTTGCCGAACCTGC
TTTCAAAAAACGTTTCACAAACCACAAGTCTTCTTGGAAGGAATTTCTTG
ACGAAATTGTCAAAAGAAGTTTGGAGGTTAAAACGAAAAAATCGCCAAAA
ATTGCATGGAAAACCATCCGACAGTGCCCACCGTTCAACCGTTCGTCACT
GAAATGCTCACTTTGTATCGCGGAGAAACTTGAAATCGCTACATTCCGAA
CCCTGACAAGCTTTTGAATTCTAGGAATGAACTGATTTCAAAATGATGTC
ACGTGAACAAGTTCACTTTAAAAGCTCACGGCACCAAGGACTaaaatgac
atcaatttttgacgaaGACCCTGCAATGTTATTTTATTGTAAGAGCAACG
GAactagttaaaaaaaaaaattattttcaactgagaATTGTTTGTAGaaa
catgaaactgccagtattaaaaaaataattttcattactgAAACTATGAT
AAAGAAAATGTCATATATTTTTGCATTAAAATTTAAGTAAGCAATTTGct
atattttcaaaggaaattaGATAAAACACATTTCTTCTATTTGGCAAGAG
AAACAACCTAAAGCAAATAGGACCCTCCCGACGCTCCAGAAACACCCGGA
GCAAAAAATTCCGCCTGTTTTGTGCTCCGGAACACCGGAAGATTCCGGAG
CACTTCCAGTAATCCGGAACACGATTTTTGGTGATTGTTTGCACTGGAAC
TCCGGAACGTTCCGATGTTCCAGAGAAAGATATCTGGGATATAATTATGA
TAATGCTTCCTGGGCTAATCATGTGAAAACTAACTGCGCACACgcgtaat
ttaaaaaaattagctGACTCATGGTATTGAAACTTcacgttttttaattt
tttcaataattcgaCCAATGATACTTTCGAATGTAATGTGACcaattcaa
tttcattacaGTAATGGCTGAACCATCATCCTCAAAGACTAAGTATTTCT
GCCTATTTTTTGTAACcacttttaaatgtttttttagaaCATGTTAAAAT
CACTTGCTCCGGAAGAGCTCCGGAACTTTCCGGAGAAAAAAGTAGTGAAA
GATATTT Run BLAST on NCBI transcript from alignment at scaffold_331:50534..54740 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059933 ID=TCONS_00059933|Name=TCONS_00059933|organism=Clytia hemisphaerica|type=transcript|length=4207bp|location=Sequence derived from alignment at scaffold_331:50534..54740 (Clytia hemisphaerica)
AAATATCTTTCACTACTTTTTTCTCCGGAAAGTTCCGGAGCTCTTCCGGA
GCAAGTGATTTTAACATGttctaaaaaaacatttaaaagtgGTTACAAAA
AATAGGCAGAAATACTTAGTCTTTGAGGATGATGGTTCAGCCATTACtgt
aatgaaattgaattgGTCACATTACATTCGAAAGTATCATTGGtcgaatt
attgaaaaaattaaaaaacgtgAAGTTTCAATACCATGAGTCagctaatt
tttttaaattacgcGTGTGCGCAGTTAGTTTTCACATGATTAGCCCAGGA
AGCATTATCATAATTATATCCCAGATATCTTTCTCTGGAACATCGGAACG
TTCCGGAGTTCCAGTGCAAACAATCACCAAAAATCGTGTTCCGGATTACT
GGAAGTGCTCCGGAATCTTCCGGTGTTCCGGAGCACAAAACAGGCGGAAT
TTTTTGCTCCGGGTGTTTCTGGAGCGTCGGGAGGGTCCTATTTGCTTTAG
GTTGTTTCTCTTGCCAAATAGAAGAAATGTGTTTTATCtaatttcctttg
aaaatatagCAAATTGCTTACTTAAATTTTAATGCAAAAATATATGACAT
TTTCTTTATCATAGTTTcagtaatgaaaattatttttttaatactggcag
tttcatgtttCTACAAACAATtctcagttgaaaataatttttttttttaa
ctagtTCCGTTGCTCTTACAATAAAATAACATTGCAGGGTCttcgtcaaa
aattgatgtcattttAGTCCTTGGTGCCGTGAGCTTTTAAAGTGAACTTG
TTCACGTGACATCATTTTGAAATCAGTTCATTCCTAGAATTCAAAAGCTT
GTCAGGGTTCGGAATGTAGCGATTTCAAGTTTCTCCGCGATACAAAGTGA
GCATTTCAGTGACGAACGGTTGAACGGTGGGCACTGTCGGATGGTTTTCC
ATGCAATTTTTGGCGATTTTTTCGTTTTAACCTCCAAACTTCTTTTGACA
ATTTCGTCAAGAAATTCCTTCCAAGAAGACTTGTGGTTTGTGAAACGTTT
TTTGAAAGCAGGTTCGGCAAGTCCGATATAAAACTTCTCGTCGTAATCTG
GTTCTTCCTCTAATGTCACTGTGGCTTGGTATACTGATCGCTCAACTAAA
CACGATCGGTTCAAGGGACAGTTGGCTTTTACCCTGCAGTTACCCTGACA
TTTTCTCTACataattttccattgaaaatacaagaaaatattttatttca
attaattttctgTTCAATATTATAGCTACAAGAAAATATTATTGTTCGAT
TTCCTTTCGAAATACAAGAAATCGTTTACATACATATTATTTctcataaa
agtaaaaatttaatttaatttctcaaaaattatcaTTGTTAACTCTTACG
TCCACCAGGGACGCGTCCTGAGAGAGAATCTTCTTTGAGCTCAGATTCCA
AGCTATGTTTTGATACTGAAAGGATCAggctactttaattggattaactt
tcgcaAGACTTTCACAATTTGcgaatttttgcctttttcggGAAATTGAA
ACTCGCGAAAATgcgtgagattcctgactcacaaaattaaatccaccaca
gaTTTTTCTTTTATCGCATTTTCTGAGAGAAACCATTGCAAAGTCtccat
ttgtggcaaaaatggctgttttcagctgttttcaggcttattcgcaaaat
taaatcgacgcaaaattattgaaaactCTGACTCGGGAAATTAAatcctg
aaaatcttttgattttttttgctcacgaaatTTAATCTGATTAAAGTATG
ATTTTCGGAAAGATAATAAAAATTCCTTTCTGAAAAGTATAGGGGTCATA
GGGTTTGGATGTaaggaaaattcaaaacaaacgtCCGGAAGCAGTAAAAA
AATGGTGGCAATGAAGGTTCTGCTATGTGATTAAAAGTAACTCGAGCTGG
CTAAGGTCgtgatttttcgaaattttttattgttctccTTGCACTAGTAT
AAATAGAGCCttgtttcaatttctttctttttttgacaGTGTAAATTCAC
GCGCGTGACTCTTTTTCGAATGTGCAATCTGGACAGGTCTTGGAAATATT
TTCCGTAGAAAATTCTCGAAGTCCACTTCATTTTTCAACACAGGGGTGGG
AGACTTTTCTTAGCAGGTCACTCAAAGTTTCTTTAAGATGCATTTGTCTT
TAATCTAAGTTATGGAGTTATCATTCTATCTATGGATATGTTTTTCCCTT
TATAAACCAAAAGTATTTCCGTTGCAAGATTTCATTCAAAATAGcattca
aatttttgttattGATTTACTTCAATCAAATAAGTTTTAGGTGGATCTAT
GCAGCTCGCTATGAATTTTTATCTGGTTGGCTACTCAAGCAAGGAAAAAC
GAAGTGAAAGAAGAAATTCAAGCCAAGTCAACGAATCAAGACTGGAAAAG
GAAGAAATGAATGTAATGGTGTCCTATGATTTGGAAAGTATTTTGTCGAT
ACAAGGTAAGCAATGCTTTGTAAAATATAGTCTCAGtttctttgcaattt
tttgctCTATTATCTTTCTCGAGGATTTCAACCCCTTTTTATTGTTGTTA
TCATCATAGAGTATTATCTTGTTTTACAGAAAGCTATCTTCATGTCTATT
ATTCTCTTACTTCCTTTGCAATGAATCTTTGAGgtggaaaaaggaaaaac
cgATTGATTGCTGTCCAGTTCACATCAAAATCTtcctttaaaaattgaaa
atatttcaatggGAAAACTTCCTTCCAGAAATATTGATAGAAACCAACCA
ACCACCCCTGTCTCCTCTCTGGTTAACCTCCTCTTTGTAGAGTTCTTCTC
GTGCCTAACTCAGCGTTCATAACTGTTCACAGGAACAGATGTCTAGCTGA
ACATTCTGggattgatttttcttttatttcatttttaggacACTgctaat
tgaaatatttttaatttgatcgtagaaattttagcgggacCATTTAGCCC
ATTTGGGTTTTCCTGAAAGCCAatgagttttttaaagaaaatctttaaat
aatataacagtcaagaacaagtgcaaattaggataccttCAGCCAATATC
TCCTAACTAGGAGAGTTATATCCTAATTTGGAGATTTAGGTATCCTAGAT
AGGAGAGCTGACACTTTGACCTGAATTTTTGAGGTTACTGCTTCGATCCA
CGTTTGGAAAACTATGCAAACCTTTTCTTCATCGAGATTTGCAcactgac
caaaatttcaagtaatttctcTGGCGGGTTCCTTGAAAATTAACATCATT
AATAATCTGCCGTTCAGAGcctacaattttgtgaacacaagctaaagatt
tgtttttctttttacggaAGGGCCTGCTACGGTCCGAATTTCAAATGGTA
GTCGTacagaagaaaaaaagtgttCGCGTATGCTAGTTAGCACATTTGAG
TGGTTTTGGGCTATAGTTTTGCATTCCGCCAGCCAAACTTGATGAAATTA
AGTACACAATCTAATTTGCTTATTATTTACATCTTGGAAGTGGTAACATA
GCGCAAATGTCTCCGGTTGGTGAAAAATAcaggttttttgatttttagta
tcctaattaggatgttgATTGCTATTTCGGATACTTTTTTGTATCCAATT
TAAGATACTCTCCTAAGTAGGAGAGATTGCGCCAAAGGTATCCTAATCAG
TCCGTCACAAAAAGCAATATTTTGATCACAtggaagcgcttcaaaacatc
agcttttttcaagttttgtctcatttacccaaacgcttcaatctcgcgta
ggcttagggttcaagactagaacccccaatacgagacatgcctgaccgaa
aaaaatcaCCATCATCAATTTTGCTAATTGTCAGAAtggtttactcactg
gaaatacgcaactttttgaggctttgttttttttttggttgtgcttcatt
ttaaaaataacgaagatgaaaagttaccatcaatctcGCGAGTAAAAGAa
ggtattccgactagtctacaaAAACTGCGCTCGttggcgaatagaatatc
tcgcaaattaatgcataaaactgacgaaatcatttcttttttatgcttaa
ttgacgctgacaaaagaaaaactaatgTCAGCCTTGTTTCGTCGTGGGTT
AAGAGAAAGATCAACCTCTCGCTCATGAAATCGCTGGTATACTGTGTCCG
AGGAANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059933-exon-scaffold_331-1491911889:50534..54740 | TCONS_00059933-exon-scaffold_331-1491911889:50534..54740 | Clytia hemisphaerica | exon |
| TCONS_00059933-exon-scaffold_331-1510915933:50534..54740 | TCONS_00059933-exon-scaffold_331-1510915933:50534..54740 | Clytia hemisphaerica | exon |
| TCONS_00059933-exon-scaffold_331-1575043694:50534..54740 | TCONS_00059933-exon-scaffold_331-1575043694:50534..54740 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:50534..54740 . |
Blast
The following BLAST results are available for this feature:
|
