TCONS_00059930 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059930
Unique NameTCONS_00059930
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length684

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059930 ID=TCONS_00059930|Name=TCONS_00059930|organism=Clytia hemisphaerica|type=transcript|length=684bp
AAATATATGAGATTTTAAGTAAGTTTCATTAGAAGCTATAACGACAAGTA
ATCAGTAAAGGGTGACAGTTAATTTATTGCATTATAGGAACAGATAGTTA
ATaatgtaaaacaaaagaaagaagtaAGAGACATAATATATATTTGATGT
GTGCTATTAGAATtgcatttaaatttttaaataaacaaattacattttaa
aatttagttatgaataaaaacccttttttgattacaattaaattcaattt
tttataagtttcttAAATGCTGCCGAATCTGCTCGTACTCTTAAAGAATC
ACGAGTTCTCGATGGATGAAAGTCAAAAGTTTCATCTTTTATGATAGCTG
CCCAGTTCTTCTCTCCATGCTTTTGTAATCCCTTTAAAAGTTCTTCATCT
TNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCGATGGATGAAAGTCAAAA
GTTTCATCTTTTATGATAGCTGCCCAGTTCTTCTCTCCATGCTTTTGTAA
TCCCTTTAAAAGTTCTTCATCTTCCTTTTGCGAAAATTTTACATTTCTGG
AAGGTCTTCTTGCTGTTTCCCTTATAGCAATCTCCTTTTTCACTTCAACA
CTTTGACTTATCTTTCGTGTATTGTAGGCTTTCTCTTTCCCAGATCTGAT
TGGTGTGGATGATTCTGTCGAGCTGATGATTTCC
Run BLAST on NCBI

protein sequence of TCONS_00059930-protein

>TCONS_00059930-protein ID=TCONS_00059930-protein|Name=TCONS_00059930-protein|organism=Clytia hemisphaerica|type=polypeptide|length=99bp
EIISSTESSTPIRSGKEKAYNTRKISQSVEVKKEIAIRETARRPSRNVKF
SQKEDEELLKGLQKHGEKNWAAIIKDETFDFHPSXXXXXXXXXXKMKNF
Run BLAST on NCBI

transcript from alignment at scaffold_331:7603..8286

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059930 ID=TCONS_00059930|Name=TCONS_00059930|organism=Clytia hemisphaerica|type=transcript|length=684bp|location=Sequence derived from alignment at scaffold_331:7603..8286 (Clytia hemisphaerica)
GGAAATCATCAGCTCGACAGAATCATCCACACCAATCAGATCTGGGAAAG
AGAAAGCCTACAATACACGAAAGATAAGTCAAAGTGTTGAAGTGAAAAAG
GAGATTGCTATAAGGGAAACAGCAAGAAGACCTTCCAGAAATGTAAAATT
TTCGCAAAAGGAAGATGAAGAACTTTTAAAGGGATTACAAAAGCATGGAG
AGAAGAACTGGGCAGCTATCATAAAAGATGAAACTTTTGACTTTCATCCA
TCGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGATGAAGAACTTTTA
AAGGGATTACAAAAGCATGGAGAGAAGAACTGGGCAGCTATCATAAAAGA
TGAAACTTTTGACTTTCATCCATCGAGAACTCGTGATTCTTTAAGAGTAC
GAGCAGATTCGGCAGCATTTaagaaacttataaaaaattgaatttaattg
taatcaaaaaagggtttttattcataactaaattttaaaatgtaatttgt
ttatttaaaaatttaaatgcaATTCTAATAGCACACATCAAATATATATT
ATGTCTCTtacttctttcttttgttttacattATTAACTATCTGTTCCTA
TAATGCAATAAATTAACTGTCACCCTTTACTGATTACTTGTCGTTATAGC
TTCTAATGAAACTTACTTAAAATCTCATATATTT

Coding sequence (CDS) from alignment at scaffold_331:7603..8286

>TCONS_00059930 ID=TCONS_00059930|Name=TCONS_00059930|organism=Clytia hemisphaerica|type=CDS|length=300bp|location=Sequence derived from alignment at scaffold_331:7603..8286 (Clytia hemisphaerica)
GAAATCATCAGCTCGACAGAATCATCCACACCAATCAGATCTGGGAAAGA
GAAAGCCTACAATACACGAAAGATAAGTCAAAGTGTTGAAGTGAAAAAGG
AGATTGCTATAAGGGAAACAGCAAGAAGACCTTCCAGAAATGTAAAATTT
TCGCAAAAGGAAGATGAAGAACTTTTAAAGGGATTACAAAAGCATGGAGA
GAAGAACTGGGCAGCTATCATAAAAGATGAAACTTTTGACTTTCATCCAT
CGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAGATGAAGAACTTTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037686XLOC_037686Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059930-proteinTCONS_00059930-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059930-exon-scaffold_331-1491911889:7603..8286TCONS_00059930-exon-scaffold_331-1491911889:7603..8286Clytia hemisphaericaexon
TCONS_00059930-exon-scaffold_331-1510915933:7603..8286TCONS_00059930-exon-scaffold_331-1510915933:7603..8286Clytia hemisphaericaexon
TCONS_00059930-exon-scaffold_331-1575043694:7603..8286TCONS_00059930-exon-scaffold_331-1575043694:7603..8286Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:7603..8286 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.509377	0.536484	0.283833	0	0.315137	0.571912	0	0.0898982	0	0	0.075671	0	0.0635704	0.0722464	0	0.045514	0	0.0574694	0.0793971	0	0	0	0.120229	0	0.0891847	0.0715688	0.125855	0.370802	0.2487	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059930 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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