TCONS_00059926 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059926
Unique NameTCONS_00059926
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length501

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059926 ID=TCONS_00059926|Name=TCONS_00059926|organism=Clytia hemisphaerica|type=transcript|length=501bp
GATGAGAAAGAACTCGATGAATGGCCTCGAGAAGATCTTGTCTATGAAGT
AAAGAAAAGCATTTTGCGGATTTTGAACATTCTTAAAGAAGaacaagaag
aaaagaaagGCTTGGATTCGCTACATCTGGTTGATGAACGAAAAATGATC
GAAGTTCGAAGTTCTTCACAAAGACCATCAAGTGATCTGGAAACAGATGA
TTCGATTCTTGACACAACATCCAAAGCCATTCAACATATTCTGTCAATCA
TGAAAACACAACAagataatataataaaaatggaTATTCTTAAAAGAACA
TTGCAAAGAATTTTATGCATTGAAAACTCTTATGCTCATTACAATTGATA
CAAATATCTTATATTTAGAGATTAGAAATGTAAGCCTTAATACTAATAAA
CCAAAtacaatcttttttataaaaactagtaaatttttgctgaggctcag
ctgtttatatttttttgacattttgagcctcaaattccTCCTTCTCTTTC
A
Run BLAST on NCBI

protein sequence of TCONS_00059926-protein

>TCONS_00059926-protein ID=TCONS_00059926-protein|Name=TCONS_00059926-protein|organism=Clytia hemisphaerica|type=polypeptide|length=115bp
DEKELDEWPREDLVYEVKKSILRILNILKEEQEEKKGLDSLHLVDERKMI
EVRSSSQRPSSDLETDDSILDTTSKAIQHILSIMKTQQDNIIKMDILKRT
LQRILCIENSYAHYN
Run BLAST on NCBI

transcript from alignment at scaffold_331:1147029..1153717-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059926 ID=TCONS_00059926|Name=TCONS_00059926|organism=Clytia hemisphaerica|type=transcript|length=6689bp|location=Sequence derived from alignment at scaffold_331:1147029..1153717- (Clytia hemisphaerica)
GATGAGAAAGAACTCGATGAATGGCCTCGAGAAGATCTTGTCTATGAAGT
AAAGAAAAGCATTTTGCGGATTTTGAACATTCTTAAAGAAGAACAAGAAG
AAAAGAAAGGTATGTCGCGTTTTTTATGTAAAAAGTGGGGGGCGTACGGT
ATTTCGGATTGCGGAAATCGACCCTTTTTTCTTCGGAATTTCGGAAATCG
GGGAAAAATTCCTTCAGTATTTCGGAATTCTGAAATTATTTTGGTATCAG
AAATCCATGAATTTTTGCTTCGAAATTTCGGTATTATAATAANNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCGTTGAGTCTTTCTTTAAAGATTTTGACAGTCTTTGCCTCT
ACAACGTATCTTGGTAATCTATTCCAGTTTGGTATACTCCTGTAAAAGAA
CGAGTTGGTTTGTGCTCCTCGGAATCCATCTTTACCAAAATTTGGTATCA
GCTCATCTTTGTGTCTCCTGTTCGGACGTGTTCGAGTCTTTAATTTACTT
GGAAGAGTATTTTTATCGTAGTAGTGGAGATGTTTGTATACTTGGACCAT
ATCACAAAAGAGTCTCCTGAATTCAAGCGTGGGGAGGTCAAGTATGCNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCAAGCGTTCTTCATAGGACA
TATCTTTGCAGATAGGCACGAGTTTTGTGGCGCGTCTTTGTACACCCTCG
ATCAAATTAACATATTTTCGAAGTTTAGGTGACCACATACCGACTGAGCA
TACTCCAAGTGCGGACGGACAAACGAAGTATATAGTACTAGGAAGATGGA
TGGATTCAGATGTTCAAAGCTCCTGCTAATCACTCCTAGTATTGAATTTG
CCTTCTTTACCTGCTTTGCAATATGCCTCTCGAATGTAAGTTCTGAGTCG
ATCACAATCCCAAGATCTTTCTCTTCAAAAACATGTTCAAGCTGATTTCC
ATCCAAACAATATGGATAGGCATGTTTGATGNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCATGCAAAAACCAGTAAGTCATTACCACTT
AGGCGAACTTCTATGATACAAGCTTCAATAAAGTTGACTTGATTTATTGA
TTTGGTCACATTAACAATCAAATAAAGTTTTTATCCCCATTTTTCGGAAT
TCATACATGAAAAATTAAATTTGATGAAAAATTAGTCAAAACGAGAAAAA
ATACCCCAAAAAATCGGTATCGGAATTGCAAGTATTTTTTTACGGAATTT
CGGAAATTTTGGCAAAATTATTCGGTATTTCGGAAATCGCAAACCCCGTA
CAGTAGGCCCCCCCCCCTCCTAAAAAAGCCAATTTATCCCGATTTCTCCA
AATCTGTGTTTAAAAAGCCTTTTACACATATATAAAGAGAGAAAGCTTTT
GNCCCCCCCCCCCCCTCCTAAAAAAGCCAATTTATCCCGATTTCTCCAAA
TCTGTGTTTAAAAAGCCTTTTACACATATATAAAGAGAGAAAGCTTTTGT
ACTAATAGGGGATCCAATAAAATAAAAAATAAAAAGTAAAATTTTTTAAA
ATTGAGAAAACGTTGAAGAAGGACTGTTGAAAGTGAATCGTGAGCTACAC
ATTCTACCGATCTGATGAAAATTAGAAATTAAATCTATTTAGATAAGCAA
GAAAAACTATGACGCTATAAAGCTAGACGAGGTATTTAAGAGAACGGTAT
GGTAACGGGTCATTCCTGAAAAAAAATTTTACCCCCTATGTTGAGGAGGT
CTTATTGGGAAAGATGACCCCCTGGATATTTTTCAATTTTTTAGGGACCG
CTTGAATTTTTTCTCATTTTTTGGACCACCTCTGGATTTTTGACCTCGTT
CTACTGAACACCCTGAATTTTTACATTGAGTTTCAAGCCCGAAGGGCTAG
AGGTCAATCTCTAACCTTTCTCAGGCAAGAAAAATTGAAGCCTTAAAATA
TGCGTCGTATTTTTGATGACGGATTGAATCTAGCAATTCCTTTGTTTTCG
AGTGATATATTTTTCAAAATTAAGCGGTATATTTTAGTTTCAATCTGTCA
TTTGTGTAAAAACCAGGCGGGTCGCTCAAGGCCGCGCAACTTTGGTAGGA
TTTGTTGGCTTCAAATCCTACCAAAGAGATTGACTTCTAGCCCTTCGGGC
TTATACTTCATTGGGGGCAAATCAATAAAATAAATCTCGTACACCATCAG
TGGCGGCCTGGCAGGGGGTGCAGGGTGTGCAGTGCACCACCCAGAAAGAT
CTGAAAGGGGCGCCAAAAGAGCTTTTCAAGGGGGTGCCAAAATTGTATTG
ATGTTTAATTGGGCGACTTGGCGCCCTTCGACAAGTTTGTAACGCCTTCT
ATAAGTGCAATGTTAATTTTTTCGCCTGCGGCGCTTCCTTTTATTTTACG
CTCTTGCATCCTTTCTCTTGACTTTGTTAAAAACTACTCTCAACATTGAA
TCGCAAAAAAGTCAAAGCAAAAGAAGTGTTGTGAATCCACTAGGGGCTAA
AGAGGATCCTCACCTTCAAAATGAGAGATTGCCAAAAAAATCGAAACTTG
ACAATGCTCACTGTGGTTTTTGTGGTCTTACGCTGATTAACTTTCTCCTT
TTTAGAAGATCTTTTAAGCTGTTTGACGTTTCTTACGTCAAAATTTTTTG
CCCGCGGCGCCAAGATTCAAAATACCCTTATTCCTGTCAACTTTCAAAAT
TTGGGGGCCTTTTTTACCCATTTTTCTTTAATGGAGAGTAAAGTAAGACC
AGCGGCGCAAAAGTTTTAAGGTTATCANCTTTTTTAGCCATTTTTCTTTA
ATGGAGAGTAAAGTAAGACCAGCGGCGCAAAAGTTTTAAGGTTATCAGGT
CATTTTTCTGATGAAGTTTTAGAAAACAAAAATATAGACCAAATCGCCTT
GCTAGTCGACTTGCTAGCTATAAAATTTCCATTTCAGCTCATGTTTTTTA
TTTGATGAGCTTTCTTTTTGGTGTTAAATCGGTATAAGATAAATTGAGGC
ATTTTTAGACATTTTAAAAGTTGAAAATAGGAAAATTTTTTACTTGTTCA
GAAAACTATGACATTTAAAATAATAACAAGGAAATAGATATCAAGTTATC
ATTACCACAACCTTCGTATGAATAAAAGTTTTTAAACTCAAAGATTCTGG
GCGTTACTTTCATCCAGTCACTGCTCTTACAGTTTAATATTTCCACTTAA
TAATGGAGGGCGCAAGTAAGGACAAAAGTACCAGGGGCGCCAATTTCATA
GCTTGCACCACCAAGAAAATTGAGCTAGGCCGCTACTGTACACCAATTTT
TCGAGTGATTTGCCCCTCGACCCTGGACGTCACAACTCCTCACTATAGGA
GGATACAGATTATTTCTGGAAGAGCCCAATGGAAGCTTCTTGGTTATATT
CTAAAAAGAATTATAAATTTGTTCTAAAACTTACTAATTTCATGCAGGCT
TGGATTCGCTACATCTGGTTGATGAACGAAAAATGATCGAAGTTCGAAGT
TCTTCACAAAGACCATCAAGTGATCTGGAAACAGATGATTCGATTCTTGA
CACAACATCCAAAGCCATTCAACATATTCTGTCAATCATGAAAACACAAC
AAGATAATATAATAAAAATGGATATTCTTAAAAGAACATTGCAAAGAATT
TTATGCATTGAAAACTCTTATGCTCATTACAATTGATACAAATATCTTAT
ATTTAGAGATTAGAAATGTAAGCCTTAATACTAATAAACCAAATACAATC
TTTTTTATAAAAACTAGTAAATTTTTGCTGAGGCTCAGCTGTTTATATTT
TTTTGACATTTTGAGCCTCAAATTCCTCCTTCTCTTTCA

Coding sequence (CDS) from alignment at scaffold_331:1147029..1153717-

>TCONS_00059926 ID=TCONS_00059926|Name=TCONS_00059926|organism=Clytia hemisphaerica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_331:1147029..1153717- (Clytia hemisphaerica)
GCTTGGATTCGCTACATCTGGTTGATGAACGAAAAATGATCGAAGTTCGA
AGTTCTTCACAAAGACCATCAAGTGATCTGGAAACAGATGATTCGATTCT
TGACACAACATCCAAAGCCATTCAACATATTCTGTCAATCATGAAAACAC
AACAAGATAATATAATAAAAATGGATATTCTTAAAAGAACATTGCAAAGA
ATTTTATGCATTGAAAACTCTTATGCTCATTACAATTGAGATGAGAAAGA
ACTCGATGAATGGCCTCGAGAAGATCTTGTCTATGAAGTAAAGAAAAGCA
TTTTGCGGATTTTGAACATTCTTAAAGAAGAACAAGAAGAAAAGAAAGGC
TTGGATTCGCTACATCTGGTTGATGAACGAAAAATGATCGAAGTTCGAAG
TTCTTCACAAAGACCATCAAGTGATCTGGAAACAGATGATTCGATTCTTG
ACACAACATCCAAAGCCATTCAACATATTCTGTCAATCATGAAAACACAA
CAAGATAATATAATAAAAATGGATATTCTTAAAAGAACATTGCAAAGAAT
TTTATGCATTGAAAACTCTTATGCTCATTACAATTGAGATGAGAAAGAAC
TCGATGAATGGCCTCGAGAAGATCTTGTCTATGAAGTAAAGAAAAGCATT
TTGCGGATTTTGAACATTCTTAAAGAAGAACAAGAAGAAAAGAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037682XLOC_037682Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059926-proteinTCONS_00059926-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059926-exon-scaffold_331-1575043694:1153609..1153717TCONS_00059926-exon-scaffold_331-1575043694:1153609..1153717Clytia hemisphaericaexon
TCONS_00059926-exon-scaffold_331-1575043694:1147029..1147420TCONS_00059926-exon-scaffold_331-1575043694:1147029..1147420Clytia hemisphaericaexon
TCONS_00059926-exon-scaffold_331-1510915933:1153609..1153717TCONS_00059926-exon-scaffold_331-1510915933:1153609..1153717Clytia hemisphaericaexon
TCONS_00059926-exon-scaffold_331-1510915933:1147029..1147420TCONS_00059926-exon-scaffold_331-1510915933:1147029..1147420Clytia hemisphaericaexon
TCONS_00059926-exon-scaffold_331-1491911889:1153609..1153717TCONS_00059926-exon-scaffold_331-1491911889:1153609..1153717Clytia hemisphaericaexon
TCONS_00059926-exon-scaffold_331-1491911889:1147029..1147420TCONS_00059926-exon-scaffold_331-1491911889:1147029..1147420Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:1147029..1153717 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.304278	0.137568	0.134588	0	0.388426	0.624825	0.438178	0	0	0.315044	0.13647	0	0.083917	0	0	0	0.161953	0	0	0	0	0.460061	0.674698	47.0788	18.4486	0	0.355599	0	0.33466
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00059926 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top