TCONS_00059923 (transcript) - C. hemisphaerica

Overview
NameTCONS_00059923
Unique NameTCONS_00059923
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1900

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00059923 ID=TCONS_00059923|Name=TCONS_00059923|organism=Clytia hemisphaerica|type=transcript|length=1900bp
AAACCCTATAAAAGATTATTAACCCCAAAGATATTATTAGGGTCGATAGC
TTGTTTTAAGCCTTTTAGTGCATTAATACCAGCTTCAGTAATAGTTTTTT
CCAAGAACTGTTTTCGAATCTTACCAATACCATGATGATGAGAAACACTT
CCACCATTCCTCATTACCTCTTGGCGAGCAGCATTCTCTACATCTTCATA
GATCTTCAAAGGCTCTGGTAAACCATGATATAAAAagccaaaatagaaat
aaatacATGCTCCAGCATCGTAGGTTTGCGTTACGCGACATGTAACAAAC
GGACGTGTCTTGACTCCATATTCTTTGCACTTACGGAAGATCTCCAATTT
GACGTTACGGCATAAATCCAAAACACGATCCCAAGGTACTGACGTTTCAA
ATGACTCAGCAATGTAAGACATATCTAGCCCGAAATCACGCAGATAAGCT
ATAGCATAAGTAAGGGTATAGCCCCTTTTCCCATTTGCCTCACCAGCCGG
GATTCCGCCATACTTCTGAACGATCTGATAAACCTTCTGTTGTTGCTCCT
CAGTGATTTCTTTGGAGCCTTCAAACAACAGGGTGCAAATGCAGATCTCT
TTAGGATCAAAACCTTTAATACGAGTGATGTAGAAAGCTTTAATCCAGTC
CATGATTTTGGTCCAGAAAGGTGTGCTGCCCGCTTTTAAAGCTTGCCCGA
ATAAGAATTGTTCATTGTCCATTAAACGAATGGAGGCGGGTGCACATTTC
CGTAAAGCAACTTCCCGAAGACTCAACACGCCAGCTTTGAAGTTAGGGAA
GACCACAGATCCGTAGGCTTTGATTTCAGGTAAAGGACGAATTTTCAAAG
TGACCTCAGTGACAACGCCAAGGGTGCCTTCAGATCCTAGAATCATGTGA
TGGATATCTGGTCCTGCTGAGATTCGAGGCACTTGACATTTCTTTTCCAT
TATACCTTGAGGTGTAACCATCCGAATTTGGACAACCAAATCTTCGATGT
TACCATAAACATTTTTCTTCATGCCTGAAGCTCTGGTTGCTACCCATCCA
CCTAGAGTACTAAACTCCATCGAATCTGGCTCGTGTCCAGTACAGAAACC
AAACTCTGCTAGCTTCTTCTCTAAGTCTTGACCGACAATACCAGCTTCGA
CGTGAGCAAGTAAATTCTCTTCGTCAAACCAGAGAATCTTGTTCATATCC
GTCATATCCAGCGACACAATCATTCGTTGCTCATCTTCAGGACAAGATAC
AGCACCAGAGACAGTTGTACCACCACCAAAAGGTATAATACAAACATCAA
ACTCAGTTGCAGCATTAACAATCTTCACAACTTCATCATGATTCTGTGGC
CACATGACTATATCAGGTATACGTTTGATTTTGGTGTAGCGTAGATCAAA
AATCTCAAAGATGGTTTGACCATGGCCATGGACAACACGATCTTCAGTAT
CAAATGATGCAATACCAGTTCCTTCGACAGCTTTGATGAAATTATCATTA
CAGATGGGTGACGGGTAATCCTCGATATTGAGGCGTTCACGACAAGGTGT
CTTCAGATTCATGTCAGCATCGCATCTCTCTTCAAACCAAGGACCAAGTT
TTGGTAACGTTTCATTAGCCAGGGCTGGATATCGGCTACCTTTGAAACAA
GCCACGTTATCTTTGTCTAAATCGAACTGTGAGTCGTTGTACCCCCATCC
ACGCCATTTTAACACTTCTTGGCGTTTGCGTGGAAAGGCTTTAAATTTGT
CAGTGTTTTCATGTGTAAAATTCAGCTTGATTGTTTCTTCACTGAGCCCA
TTGACATTTGCCATTatctgaaaagagaaaaagtctTGCTTAAGTTGAGT
TCGGAATTACAATAAGTTGATCTTATCAATGATCTGTAAGAATGATTTAG
Run BLAST on NCBI

transcript from alignment at scaffold_331:1109893..1111860-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00059923 ID=TCONS_00059923|Name=TCONS_00059923|organism=Clytia hemisphaerica|type=transcript|length=1968bp|location=Sequence derived from alignment at scaffold_331:1109893..1111860- (Clytia hemisphaerica)
AAACCCTATAAAAGATTATTAACCCCAAAGATATTATTAGGGTCGATAGC
TTGTTTTAAGCCTTTTAGTGCATTAATACCAGCTTCAGTAATAGTTTTTT
CCAAGAACTGTTTTCGAATCTTACCAATACCATGATGATGAGAAACACTT
CCACCATTCCTCATTACCTCTTGGCGAGCAGCATTCTCTACATCTTCATA
GATCTTCAAAGGCTCTGGTAAACCATGATATAAAAAGCCAAAATAGAAAT
AAATACATGCTCCAGCATCGTAGGTTTGCGTTACGCGACATGTAACAAAC
GGACGTGTCTTGACTCCATATTCTTTGCACTTACGGAAGATCTCCAATTT
GACGTTACGGCATAAATCCAAAACACGATCCCAAGGTACTGACGTTTCAA
ATGACTCAGCAATGTAAGACATATCTAGCCCGAAATCACGCAGATAAGCT
ATAGCATAAGTAAGGGTATAGCCCCTTTTCCCATTTGCCTCACCAGCCGG
GATTCCGCCATACTTCTGAACGATCTGATAAACCTTCTGTTGTTGCTCCT
CAGTGATTTCTTTGGAGCCTTCAAACAACAGGGTGCAAATGCAGATCTCT
TTAGGATCAAAACCTTTAATACGAGTGATGTAGAAAGCTTTAATCCAGTC
CATGATTTTGGTCCAGAAAGGTGTGCTGCCCGCTTTTAAAGCTTGCCCGA
ATAAGAATTGTTCATTGTCCATTAAACGAATGGAGGCGGGTGCACATTTC
CGTAAAGCAACTTCCCGAAGACTCAACACGCCAGCTTTGAAGTTAGGGAA
GACCACAGATCCGTAGGCTTTGATTTCAGGTAAAGGACGAATTTTCAAAG
TGACCTCAGTGACAACGCCAAGGGTGCCTTCAGATCCTAGAATCATGTGA
TGGATATCTGGTCCTGCTGAGATTCGAGGCACTTGACATTTCTTTTCCAT
TNACCCAGAATCATGTGGTGGATATCTGGTCCTGCTGAGATTCGAGGCAC
TTGACATTTCTTTTCCATTATACCTTGAGGTGTAACCATCCGAATTTGGA
CAACCAAATCTTCGATGTTACCATAAACATTTTTCTTCATGCCTGAAGCT
CTGGTTGCTACCCATCCACCTAGAGTACTAAACTCCATCGAATCTGGCTC
GTGTCCAGTACAGAAACCAAACTCTGCTAGCTTCTTCTCTAAGTCTTGAC
CGACAATACCAGCTTCGACGTGAGCAAGTAAATTCTCTTCGTCAAACCAG
AGAATCTTGTTCATATCCGTCATATCCAGCGACACAATCATTCGTTGCTC
ATCTTCAGGACAAGATACAGCACCAGAGACAGTTGTACCACCACCAAAAG
GTATAATACAAACATCAAACTCAGTTGCAGCATTAACAATCTTCACAACT
TCATCATGATTCTGTGGCCACATGACTATATCAGGTATACGTTTGATTTT
GGTGTAGCGTAGATCAAAAATCTCAAAGATGGTTTGACCATGGCCATGGA
CAACACGATCTTCAGTATCAAATGATGCAATACCAGTTCCTTCGACAGCT
TTGATGAAATTATCATTACAGATGGGTGACGGGTAATCCTCGATATTGAG
GCGTTCACGACAAGGTGTCTTCAGATTCATGTCAGCATCGCATCTCTCTT
CAAACCAAGGACCAAGTTTTGGTAACGTTTCATTAGCCAGGGCTGGATAT
CGGCTACCTTTGAAACAAGCCACGTTATCTTTGTCTAAATCGAACTGTGA
GTCGTTGTACCCCCATCCACGCCATTTTAACACTTCTTGGCGTTTGCGTG
GAAAGGCTTTAAATTTGTCAGTGTTTTCATGTGTAAAATTCAGCTTGATT
GTTTCTTCACTGAGCCCATTGACATTTGCCATTATCTGAAAAGAGAAAAA
GTCTTGCTTAAGTTGAGTTCGGAATTACAATAAGTTGATCTTATCAATGA
TCTGTAAGAATGATTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_037680XLOC_037680Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00059923-exon-scaffold_331-1575043694:1110924..1111860TCONS_00059923-exon-scaffold_331-1575043694:1110924..1111860Clytia hemisphaericaexon
TCONS_00059923-exon-scaffold_331-1575043694:1109893..1110855TCONS_00059923-exon-scaffold_331-1575043694:1109893..1110855Clytia hemisphaericaexon
TCONS_00059923-exon-scaffold_331-1510915933:1110924..1111860TCONS_00059923-exon-scaffold_331-1510915933:1110924..1111860Clytia hemisphaericaexon
TCONS_00059923-exon-scaffold_331-1510915933:1109893..1110855TCONS_00059923-exon-scaffold_331-1510915933:1109893..1110855Clytia hemisphaericaexon
TCONS_00059923-exon-scaffold_331-1491911889:1110924..1111860TCONS_00059923-exon-scaffold_331-1491911889:1110924..1111860Clytia hemisphaericaexon
TCONS_00059923-exon-scaffold_331-1491911889:1109893..1110855TCONS_00059923-exon-scaffold_331-1491911889:1109893..1110855Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_331supercontigscaffold_331:1109893..1111860 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	11.5011	6.3464	6.30604	10.8096	15.4301	19.206	10.893	11.0443	18.3393	13.6954	0	0	0	0	0	0	0	0	0	0	19.0375	19.1388	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016167FAD-bd_2_sub1
IPR016171Vanillyl_alc_oxidase_C-sub2
IPR006094Oxid_FAD_bind_N
IPR004113FAD-linked_oxidase_C
IPR016169CO_DH_flavot_FAD-bd_sub2
IPR016166FAD-bd_2
IPR016164FAD-linked_Oxase-like_C
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0050660flavin adenine dinucleotide binding
GO:0016491oxidoreductase activity
GO:0016614oxidoreductase activity, acting on CH-OH group of donors
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0003824 catalytic activity
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0016614 oxidoreductase activity, acting on CH-OH group of donors
Blast
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BLAST of TCONS_00059923 vs. Swiss-Prot (Human)
Match: ADAS (Alkyldihydroxyacetonephosphate synthase, peroxisomal OS=Homo sapiens GN=AGPS PE=1 SV=1)

HSP 1 Score: 716.457 bits (1848), Expect = 0.000e+0
Identity = 337/578 (58.30%), Postives = 431/578 (74.57%), Query Frame = -3 
Query:    9 AFPRKRQEVLKWRGWGYNDSQFDLDKDNVACFKGSRYPALANETLPKLGPWFEERCDADMNLKTPCRERLNIEDYPSPICNDNFIKAVEGTGIA-SFDTEDRVVHGHGQTIFEIFDLRYTKIKRIPDIVMWPQNHDEVVKIVNAATEFDVCIIPFGGGTTVSGAVSCPEDEQRMIVSLDMTDMNKILWFDEENLLAHVEAGIVGQDLEKKLAEFGFCTGHEPDSMEFSTLGGWVATRASGMKKNVYGNIEDLVVQIRMVTPQGIMEKKCQVPRISAGPDIHHMILGSEGTLGVVTEVTLKIRPLPEIKAYGSVVFPNFKAGVLSLREVALRKCAPASIRLMDNEQFLFGQALKAGSTPFWTKIMDWIKAFYITRIKGFDPKEICICTLLFEGSKEITXXXXXXXXXXXXXYGGIPAGEANGKRGYTLTYAIAYLRDFGLDMSYIAESFETSVPWDRVLDLCRNVKLEIFRKCKEYGVKTRPFVTCRVTQTYDAGACIYFYFGFLYHGLPEPLKIYEDVENAARQEVMRNGGSVSHHHGIGKIRKQFLEKTITEAGINALKGLKQAIDPNNIFGVNNLL 1739
              P+KRQEV+KW GWGYNDS+F  +K       G RYP L+   LP    W +     ++  KT  +  LN  D P  + N++F+  ++ T I+ S + +DRV   HG  + EIF LR    +RIPDIV+WP  HD+VVKIVN A ++++CIIP GGGT+VS  + CP DE R I+SLD + MN+ILW DE NL AHVEAGI GQ+LE++L E G+CTGHEPDS+EFST+GGWV+TRASGMKKN+YGNIEDLVV I+MVTP+GI+EK CQ PR+S GPDIHH I+GSEGTLGV+TE T+KIRP+PE + YGSV FPNF+ GV  LRE+A ++CAPASIRLMDN+QF FG ALK   +  +T  +D +K FYIT+ KGFDP ++ + TLLFEG +E   + +++VY I  K+GG+ AGE NG+RGY LTY IAY+RD  L+   + ESFETS PWDRV+DLCRNVK  I R+CKE GV+  PF TCRVTQTYDAGACIYFYF F Y G+ +PL ++E  E AAR+E++ NGGS+SHHHG+GK+RKQ+L+++I++ G   LK +K+ +DPNNIFG  NLL
Sbjct:   82 TIPKKRQEVMKWNGWGYNDSKFIFNKKGQIELTGKRYP-LSGMGLPTFKEWIQNTLGVNVEHKTTSKASLNPSDTPPSVVNEDFLHDLKETNISYSQEADDRVFRAHGHCLHEIFLLREGMFERIPDIVLWPTCHDDVVKIVNLACKYNLCIIPIGGGTSVSYGLMCPADETRTIISLDTSQMNRILWVDENNLTAHVEAGITGQELERQLKESGYCTGHEPDSLEFSTVGGWVSTRASGMKKNIYGNIEDLVVHIKMVTPRGIIEKSCQGPRMSTGPDIHHFIMGSEGTLGVITEATIKIRPVPEYQKYGSVAFPNFEQGVACLREIAKQRCAPASIRLMDNKQFQFGHALKPQVSSIFTSFLDGLKKFYITKFKGFDPNQLSVATLLFEGDREKVLQHEKQVYDIAAKFGGLAAGEDNGQRGYLLTYVIAYIRDLALEYYVLGESFETSAPWDRVVDLCRNVKERITRECKEKGVQFAPFSTCRVTQTYDAGACIYFYFAFNYRGISDPLTVFEQTEAAAREEILANGGSLSHHHGVGKLRKQWLKESISDVGFGMLKSVKEYVDPNNIFGNRNLL 658
The following BLAST results are available for this feature:
BLAST of TCONS_00059923 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ADAS0.000e+058.30Alkyldihydroxyacetonephosphate synthase, peroxisom... [more]
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