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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059920 ID=TCONS_00059920|Name=TCONS_00059920|organism=Clytia hemisphaerica|type=transcript|length=1187bp
ACTGtttgtaaaaagatttcacttaTTTCAGCTCTAGACTGGACGCAAAC
ATCGACGTTTAGTTGCTTGGTTGCAGACTAACATTTACATTGAAGAAACA
TTTAAAACGAAACACCGTTATGAACGAAACAAGAGATGGCTTCAATGTAC
CCGGTGGTGGTGGCACGGGCGGCTTGGGCGGTCCTGGTGGTGAAAGCTTT
AAGAAATTTCTAACATTTCCAAATAAAAACGAACCTCATGTTCTGATCTT
ACAACACATCGGTGACGGCATTACAACTCTGGCAATCATTGTCAACATTC
TTGGTATATTTGTTATCAACTCATCATGCAAGAAACTCAACAAACtatca
aattcaaaacttttacTGATGTATATGAGTCTGACGATTATTGCTCAATC
GATGTTTAAATTTGCAATGTTGTACGCTAAATTACCTATCACTAAGAAAC
TCTACCTGTTCATATTCTTTGCAATGTTTTTAATCCTACGACGTCTATCA
GTCATCATAATGAGTATTGACCAAATCTCTATCATCGTTCTTGGCGTTAA
ATACAAGACCATAATGACCAAGAAAGTCatattttggatgctcttaacGA
CATATATCTTAGGAATCGAATTCGTGGTTCTGCGTATCATATTCATCAAG
AATTTCCGATGCAGCCGTATTGTGACCAGTACTAACTTATTCACTGCTGA
TGCTTTCTTCATCTTATTTGCAATCTTGACATTCGCATCGCTCAAAAGAT
GGAATTCGAATCGATCAGGAATCACCAAGAATGCCAGAGCTAAAGATGCG
GTAATAGCTATATTATGTATTCTAGCAACACAAACTGTCTTATCCATAAT
ACCTGACATAATTGGTTCAACGGCTTTGTTTCAAGGTGAAAATCAAGCCA
TCTGGAAATCGATCAATCATATATGTTCGGGAATCTCAGCGCTATGTGAT
CCGTTGTTATATATCTTGGTGGTTAAGAATCATAGGCAGATTGCAAAGAA
GATGATTCAAAGACGAACTTTGTTCTTGAAGAATCAAAATACTGTTAGTC
CTGAGAATAGTTGAGTTTGATCTGGGGAGGGGGCACTTAGCcgaaatggg
tgccgggtatgtgcgagtcATAACGGTCTCTTTTTCAAAATCCCTctaag
gggtacaaaaaccattaaaaagcaattgagTCCATGT Run BLAST on NCBI protein sequence of TCONS_00059920-protein >TCONS_00059920-protein ID=TCONS_00059920-protein|Name=TCONS_00059920-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp
MNETRDGFNVPGGGGTGGLGGPGGESFKKFLTFPNKNEPHVLILQHIGDG
ITTLAIIVNILGIFVINSSCKKLNKLSNSKLLLMYMSLTIIAQSMFKFAM
LYAKLPITKKLYLFIFFAMFLILRRLSVIIMSIDQISIIVLGVKYKTIMT
KKVIFWMLLTTYILGIEFVVLRIIFIKNFRCSRIVTSTNLFTADAFFILF
AILTFASLKRWNSNRSGITKNARAKDAVIAILCILATQTVLSIIPDIIGS
TALFQGENQAIWKSINHICSGISALCDPLLYILVVKNHRQIAKKMIQRRT
LFLKNQNTVSPENS Run BLAST on NCBI transcript from alignment at scaffold_331:1090828..1092333- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059920 ID=TCONS_00059920|Name=TCONS_00059920|organism=Clytia hemisphaerica|type=transcript|length=1506bp|location=Sequence derived from alignment at scaffold_331:1090828..1092333- (Clytia hemisphaerica)
ACTGTTTGTAAAAAGATTTCACTTATTTCAGCTCTAGACTGGACGCAAAC
ATCGACGTTTAGTTGCTTGGTTGCAGACTAACATTTACATTGAAGAAACA
TTTAAAACGAAACACCGTTATGAACGTAAGTAATAGTGGGGTGGCTTGGC
TCAAAGAAACATGCTAATACTGCAAATTTTTCTTGAAAATCTTAAAAATC
TTTCTGAAATACGAAATACAACATTGGTCCCCTCAGCCTCTGTAGTTCGA
AGAAAGTTCTTTGTTTCTTGAAGTTCGAATTGGAGAGAGTCAACTGTATG
GTTAACTAAATGGAAAATTTGATGAAAAAAAACAATCTTTTATCAGAAAA
CTTGACCTTAGATTTTAAAGAGCTTAGAAACTGCATTCTAAATTATTTGA
AATTAAACTTGATAAATCCAAAAACTTGTTTTCATTCATTTCAGGAAACA
AGAGATGGCTTCAATGTACCCGGTGGTGGTGGCACGGGCGGCTTGGGCGG
TCCTGGTGGTGAAAGCTTTAAGAAATTTCTAACATTTCCAAATAAAAACG
AACCTCATGTTCTGATCTTACAACACATCGGTGACGGCATTACAACTCTG
GCAATCATTGTCAACATTCTTGGTATATTTGTTATCAACTCATCATGCAA
GAAACTCAACAAACTATCAAATTCAAAACTTTTACTGATGTATATGAGTC
TGACGATTATTGCTCAATCGATGTTTAAATTTGCAATGTTGTACGCTAAA
TTACCTATCACTAAGAAACTCTACCTGTTCATATTCTTTGCAATGTTTTT
AATCCTACGACGTCTATCAGTCATCATAATGAGTATTGACCAAATCTCTA
TCATCGTTCTTGGCGTTAAATACAAGACCATAATGACCAAGAAAGTCATA
TTTTGGATGCTCTTAACGACATATATCTTAGGAATCGAATTCGTGGTTCT
GCGTATCATATTCATCAAGAATTTCCGATGCAGCCGTATTGTGACCAGTA
CTAACTTATTCACTGCTGATGCTTTCTTCATCTTATTTGCAATCTTGACA
TTCGCATCGCTCAAAAGATGGAATTCGAATCGATCAGGAATCACCAAGAA
TGCCAGAGCTAAAGATGCGGTAATAGCTATATTATGTATTCTAGCAACAC
AAACTGTCTTATCCATAATACCTGACATAATTGGTTCAACGGCTTTGTTT
CAAGGTGAAAATCAAGCCATCTGGAAATCGATCAATCATATATGTTCGGG
AATCTCAGCGCTATGTGATCCGTTGTTATATATCTTGGTGGTTAAGAATC
ATAGGCAGATTGCAAAGAAGATGATTCAAAGACGAACTTTGTTCTTGAAG
AATCAAAATACTGTTAGTCCTGAGAATAGTTGAGTTTGATCTGGGGAGGG
GGCACTTAGCCGAAATGGGTGCCGGGTATGTGCGAGTCATAACGGTCTCT
TTTTCAAAATCCCTCTAAGGGGTACAAAAACCATTAAAAAGCAATTGAGT
CCATGT Coding sequence (CDS) from alignment at scaffold_331:1090828..1092333- >TCONS_00059920 ID=TCONS_00059920|Name=TCONS_00059920|organism=Clytia hemisphaerica|type=CDS|length=1890bp|location=Sequence derived from alignment at scaffold_331:1090828..1092333- (Clytia hemisphaerica)
GAAACAAGAGATGGCTTCAATGTACCCGGTGGTGGTGGCACGGGCGGCTT
GGGCGGTCCTGGTGGTGAAAGCTTTAAGAAATTTCTAACATTTCCAAATA
AAAACGAACCTCATGTTCTGATCTTACAACACATCGGTGACGGCATTACA
ACTCTGGCAATCATTGTCAACATTCTTGGTATATTTGTTATCAACTCATC
ATGCAAGAAACTCAACAAACTATCAAATTCAAAACTTTTACTGATGTATA
TGAGTCTGACGATTATTGCTCAATCGATGTTTAAATTTGCAATGTTGTAC
GCTAAATTACCTATCACTAAGAAACTCTACCTGTTCATATTCTTTGCAAT
GTTTTTAATCCTACGACGTCTATCAGTCATCATAATGAGTATTGACCAAA
TCTCTATCATCGTTCTTGGCGTTAAATACAAGACCATAATGACCAAGAAA
GTCATATTTTGGATGCTCTTAACGACATATATCTTAGGAATCGAATTCGT
GGTTCTGCGTATCATATTCATCAAGAATTTCCGATGCAGCCGTATTGTGA
CCAGTACTAACTTATTCACTGCTGATGCTTTCTTCATCTTATTTGCAATC
TTGACATTCGCATCGCTCAAAAGATGGAATTCGAATCGATCAGGAATCAC
CAAGAATGCCAGAGCTAAAGATGCGGTAATAGCTATATTATGTATTCTAG
CAACACAAACTGTCTTATCCATAATACCTGACATAATTGGTTCAACGGCT
TTGTTTCAAGGTGAAAATCAAGCCATCTGGAAATCGATCAATCATATATG
TTCGGGAATCTCAGCGCTATGTGATCCGTTGTTATATATCTTGGTGGTTA
AGAATCATAGGCAGATTGCAAAGAAGATGATTCAAAGACGAACTTTGTTC
TTGAAGAATCAAAATACTGTTAGTCCTGAGAATAGTTGAATGAACGAAAC
AAGAGATGGCTTCAATGTACCCGGTGGTGGTGGCACGGGCGGCTTGGGCG
GTCCTGGTGGTGAAAGCTTTAAGAAATTTCTAACATTTCCAAATAAAAAC
GAACCTCATGTTCTGATCTTACAACACATCGGTGACGGCATTACAACTCT
GGCAATCATTGTCAACATTCTTGGTATATTTGTTATCAACTCATCATGCA
AGAAACTCAACAAACTATCAAATTCAAAACTTTTACTGATGTATATGAGT
CTGACGATTATTGCTCAATCGATGTTTAAATTTGCAATGTTGTACGCTAA
ATTACCTATCACTAAGAAACTCTACCTGTTCATATTCTTTGCAATGTTTT
TAATCCTACGACGTCTATCAGTCATCATAATGAGTATTGACCAAATCTCT
ATCATCGTTCTTGGCGTTAAATACAAGACCATAATGACCAAGAAAGTCAT
ATTTTGGATGCTCTTAACGACATATATCTTAGGAATCGAATTCGTGGTTC
TGCGTATCATATTCATCAAGAATTTCCGATGCAGCCGTATTGTGACCAGT
ACTAACTTATTCACTGCTGATGCTTTCTTCATCTTATTTGCAATCTTGAC
ATTCGCATCGCTCAAAAGATGGAATTCGAATCGATCAGGAATCACCAAGA
ATGCCAGAGCTAAAGATGCGGTAATAGCTATATTATGTATTCTAGCAACA
CAAACTGTCTTATCCATAATACCTGACATAATTGGTTCAACGGCTTTGTT
TCAAGGTGAAAATCAAGCCATCTGGAAATCGATCAATCATATATGTTCGG
GAATCTCAGCGCTATGTGATCCGTTGTTATATATCTTGGTGGTTAAGAAT
CATAGGCAGATTGCAAAGAAGATGATTCAAAGACGAACTTTGTTCTTGAA
GAATCAAAATACTGTTAGTCCTGAGAATAGTTGAATGAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059920-exon-scaffold_331-1575043694:1092209..1092333 | TCONS_00059920-exon-scaffold_331-1575043694:1092209..1092333 | Clytia hemisphaerica | exon |
| TCONS_00059920-exon-scaffold_331-1575043694:1090828..1091889 | TCONS_00059920-exon-scaffold_331-1575043694:1090828..1091889 | Clytia hemisphaerica | exon |
| TCONS_00059920-exon-scaffold_331-1510915933:1092209..1092333 | TCONS_00059920-exon-scaffold_331-1510915933:1092209..1092333 | Clytia hemisphaerica | exon |
| TCONS_00059920-exon-scaffold_331-1510915933:1090828..1091889 | TCONS_00059920-exon-scaffold_331-1510915933:1090828..1091889 | Clytia hemisphaerica | exon |
| TCONS_00059920-exon-scaffold_331-1491911889:1092209..1092333 | TCONS_00059920-exon-scaffold_331-1491911889:1092209..1092333 | Clytia hemisphaerica | exon |
| TCONS_00059920-exon-scaffold_331-1491911889:1090828..1091889 | TCONS_00059920-exon-scaffold_331-1491911889:1090828..1091889 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:1090828..1092333 - |
Blast
The following BLAST results are available for this feature:
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