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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059906 ID=TCONS_00059906|Name=TCONS_00059906|organism=Clytia hemisphaerica|type=transcript|length=1868bp
ATCTTATCTCGACACCACGTGAGCCGAAACTTTTATAACTGTCGATGTAA
CACGACGCACGAAACTTTTTACACAATGTCGTAGGCCGTAGAATTTTGGT
GCGTGCCTACATTGAAACAGTCGAAGTTCTCACGCAAGCAAGGAGTTGCG
GACGGCAGGCTGTTTTGGTAGGAAAGCCaccaaatttttaattttttatc
gtTTTATATTCAACATAAGATGGGCAATACTTACACATTATATGCTGCTG
AAGGGATGGCTCCTCCTCCAGTTGACCCTGCTCCACAGTCTCCACCAACT
AGTCAATCTATCTTGACTGCTGTCAGCAACAATCCCGGTGTTTTCGAAGA
CTTGCACAAAAAGTGCAAAGAACTTTTCCCTGTCCCATTTGATGGGTTTC
GACTTGCAATCAACAAAGGCTTAAGTAATCATTTCCAAGTCAGTCACACA
CTAAATTTGACGTCAGCTCCACAAGGATCATCATATCACTTTGGTGCTAC
CTATGTTGGTGGATCACAGACAAGTCCATCGGAAGCTTATCCAGTCATTC
TTGGAGATATTGACAACAGCGGAAGTTTGAGTGCGCAAATCATTCATCAG
TTTTCTCAAAGAATAAAAGGAAAATGTGTTGTCCAGAGTCAAAAACAAGA
ATTAGCCATGGTACAATTTGATGCTGATTATCGAGGTGATGATTTCACAG
CCACCTGTACCCTTGGAAATATTGATGTAATTAATGAGTCTGGTATAATT
GTTGGTCATTACTTACAACGTCTGACAAAAAGTTTAGATCTTGGTGCCGA
AATACTTTATCATTATGGACAAGGCCAAGAATCTGCTACTCTTTCAGTAG
CAGGAAAATATACACAAGAAAAATGGATAGGAGCTGCTCAGATAAACCCA
GGAGGCTGGCATGTTTCTTATTATCATAAAGCAAACGATAATATACAGGT
TGGAGTTGATTATGAATATAGTTCACGGATGCAAGACTCTTGCGTAAGTT
TAGGTTACCAAGTGGATGTTCCTAAAGCTAATGTTACTTATCGTGGTTTG
GTTGATACTAACTGGACTGTTGCTGGTATATTCGAGAAAAGATTACACCC
ATTACCATTTTCTTTTGTATTAAGTGGAATGTTAAACCATGTCAAGAATC
AATGTCGGTTCGGTTTTGCATTACAAATTGGTTAGTTTTTCTAATCGTCA
ATTACCATTACATAATGAGACTATCTAATTATGTGCTTTGAGCACTTGAA
AATATGTGAAGAACAGAAATCATACAGTTGCCTAAATGCTGGctgtaaaa
tagaaaaataaaaacgaacagatattttttgtcataatttttttacctgT
CAGAAGAATTTCAGAAATCAGCTTTTAAAGGACCTCACATTCATAGAATA
TATTCTACTTCcaatattcaactttttgtttaaaatgtaAGTTATAGAGT
TTTTAGaacacattttttatttcttttatttcattgaTACTATAAGACGA
TGGGTTTTAGACCTTCTATCTGGTGACCCTGTGAAAGCTGCCCAGGAAAG
TTAATTTTAGTAACTCTAAGGAAAACCTTGAAAACACTTTTTGCATGTAT
ACATTAGTGAATgactttgtgttttccaaaacCCTTTTAAAATTCTAGAA
GCAATTGGTTTTATATTTTCATGACAGTTTTGACTTATACTGCAGCCTGA
AATGttgtattatattatttttgatGTTATAGATAGTTTAGAATAAAACT
TAGAAATCTCTACTTTATAAATAAGCATACAATGTAATGAAAACAAGCTT
GTCTTCAGATTTTTCCTCTAATAGTCTTTCTTCTAGGTCGTTCAAAAAGC
Tgtattttatttacaaat Run BLAST on NCBI protein sequence of TCONS_00059906-protein >TCONS_00059906-protein ID=TCONS_00059906-protein|Name=TCONS_00059906-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MGNTYTLYAAEGMAPPPVDPAPQSPPTSQSILTAVSNNPGVFEDLHKKCK
ELFPVPFDGFRLAINKGLSNHFQVSHTLNLTSAPQGSSYHFGATYVGGSQ
TSPSEAYPVILGDIDNSGSLSAQIIHQFSQRIKGKCVVQSQKQELAMVQF
DADYRGDDFTATCTLGNIDVINESGIIVGHYLQRLTKSLDLGAEILYHYG
QGQESATLSVAGKYTQEKWIGAAQINPGGWHVSYYHKANDNIQVGVDYEY
SSRMQDSCVSLGYQVDVPKANVTYRGLVDTNWTVAGIFEKRLHPLPFSFV
LSGMLNHVKNQCRFGFALQIG Run BLAST on NCBI transcript from alignment at scaffold_331:749152..756356- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059906 ID=TCONS_00059906|Name=TCONS_00059906|organism=Clytia hemisphaerica|type=transcript|length=7205bp|location=Sequence derived from alignment at scaffold_331:749152..756356- (Clytia hemisphaerica)
ATCTTATCTCGACACCACGTGAGCCGAAACTTTTATAACTGTCGATGTAA
CACGACGCACGAAACTTTTTACACAATGTCGTAGGCCGTAGAATTTTGGT
GCGTGCCTACATTGAAACAGTCGAAGTTCTCACGCAAGCAAGGAGTTGCG
GACGGCAGGCTGTTTTGGTAGGAAAGCCACCAAATTTTTAATTTTTTATC
GTTTTATATTCAACATAAGATGGGCAATACTTACACATTATATGCTGCTG
AAGGGATGGCTCCTCCTCCAGTTGACCCTGCTCCACAGTCTCCACCAACT
AGTCAATCTATCTTGACTGCTGTCAGCAACAATCCCGGTGTTTTCGAAGA
CTTGCACAAAAAGTGCAAAGGTATATACTTTTTATTCAATTTCTCTTCTA
TATCTTCTATATCTATACCAATTTTTTAGTTGTGTGAATTGTTTTTCTAA
TTCCTAATTGAACTGACTAGGTCAGTCGAAATTTCTCAGTCTGAGAAATC
CTCTCTCAAGTCTGTAAGAGCGCGCAGCAGTTACACAGTTAAAATTTACG
CCTGCTGTGTGCAATTGCTCGGTTATGATCCAGTCCAGGTTGAGATTGCT
TTAGCAGGTTATAGAGGGTTCAGATTTTTCAAATTAGGCAAATACATGGT
CAGTGAGGCTGGAACTTCGGTTTTTGAGGATTACGATTTTACCAGTTTTT
TAGTGATTTTTGGCTCGCTAGCCCAAATCTCGCAACCTCTTTAAGGAAGA
TTGAAATTAGAGTTTTTCAGCGTTCCGAAAAAAACGCATAGCAGAAATTT
TTTCATCTTCACAGACAGGATCAATTCTCAACAACAAACTACATCTTTTG
GTCTTTGGGTTTGTTTCTGACGTTTTTTCTTCAAAGAATATCTATCACTT
TCCTTTTCCCCTTGAGCGCGCGAGAAAAAAATGACTAGCTCGTTTTCGTG
CGGGCGAATAAAGATGAGGCGGCAATCTTGCACTGAGGGTGCTACTTAGT
TTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCC
ACGATAGAATGGTCCAAACACGGGGGTAGTCTAAATGATAAACTATGTCG
TTCTGTAAGTGTTTATTTTCTGAGAGATACAAATAGTATTTGAATATTAT
TAACTTATTTATTAAAGTATTTTTGAGCGCAAATTTAAATATACGGTTAA
ATAAAAAACGAATGATAACAGTTCCTGTTTATTCCTCAAACCCCCGGGAA
AAGTTTTTTTGCTGACTTAGCTATTTTACAAATCTCGGAAAAGAACTCCC
ATAGGAATTCCGATACCTAACCCGATTNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNGTGTGTAATTTATCGATGTCGATGGCTTGTTGAT
TCTTTAAAGAAAAAAGATAACAGGTATAGCTTTTTCTAATCCTGGAATAT
CGAGGTTCCAGCTACACTGATGGTCAAACTGGCAAAAGTTTTTTAACACA
ATCATTTTCTACGATAAATTTTGAGTAAGATAGTAAGTAGTCCAAGGCTT
TCTGATTTTACCGAAGCGATCTGAAGCAATAAAGTATTTTTAAATGATAG
ACTAGTTGAGGGATACCGTCAACTGCTTTAAACTTGGGGCGATCGGACGA
AACATGAGACTGTTGCATATCTGGTCTATATTTTCACTAAGGGGCCGTCG
ACATTCGACTTTCGAATTTTTTAACGGCATTTAGCCGTTAAGGGGGGGAG
GGGGTCAACCATGTGCCGTTGAGGGAAGGTTGAAAATCTCTTTAGGGGTC
AACTCACCACATATCAATTCTTTTCACCAGAAAATATCGATTTTTGAGAC
GTTTATTCTATACAAATGTTACTTTCCATATTTCTTTTCCTCCTTTTATC
AACTAAGATCTGCTAAAGTCGCATACCTAAAGTACCGTGAGAGGTCCTAA
AGCCGACAGCCCAGCCTAAAGCCGATGGGGTCTTTCAAAGATACAAACTA
AAATAGAAACAAACCTTTCGCTGTGACGCAACGAAGATACCAAAGTGTCA
ACTAAACTGAGAGATTTGATACATTGAACCAATTGAACCAAATAACAATA
ATTGCTTCTTATAACAAAACATATTTTTTTATTGNNNNNNNNNNNNNNNN
NNNNNNAAATGACAACAGTAGTAACAGCATCATAAAAAGTAACGAGATGT
TTTGATTTTCCAAAGCACACGAAAATATAAAAGAGGTCTGTGTACGAGCG
TGCTCGTTTTGAAACGTTACGTAATCAAGCCTGGTTTCTATTACTTTACA
CTGGCACTTGGCTTGTTTGCGGGGCTAGTACTTTGTGTAAGGATACATAT
AGATGACGTATATTACATTATATTATATATTACATGATAAGAATACAAAT
AGACGACGCATATTACAATTATTATGTATTACATGACACCTTGCTCCTAT
TCTAGTAAAGATAATATATGTCGTCAAAGAGTACACTTAAATGAAGAGCT
GCCGATTGGGGAGCCTTCCGTAAATAAACATCTTATAGGTGGTAAAGAAG
GCGTTGATAGTTGCCACCTCATTGATTCAATGTTTGTTATTCAAATTAGT
GCTACCGCATCCGCCCTTTTTTCAACTTCGCGCCATTTTTNGCGTTGATA
GTTCCCGCCTCATTGATTCGATGTTTGTTATTCAAATAAGTGCTACCGCA
TCCGCCCTTTTTTCAACTTCGCACCATTTTTACAATTTAGTCTGTTTGTT
TCTTGATGAAAACCAGTCCAAGTTGTTTCGTATTTTTCCCGCACAAGTCA
CTTTTATTACAAAACTGTTATCANNNNNNNTCCAGAATAAAAGGTAATTA
TTTTTACAACTCGCACTTTTTAATTACATTAATTGACATCTTGACATTAC
AGCTATCTTGTTAGATGTTTTGTTTTGAGAGTTATAGCAATAGTTTATCG
TTCAACTTGGAGAGGGAATGTTTGTAAACATAGAATTTTTTTTCATAACA
GTTATTTGGGGGGTCGGAATTAGGCTGGGCTGTCGGCTTTAGGACCTCTC
ACGGTATTCACTTCGCTATTTTTTAGAATAATTTTAACCAAAACAAACGA
CCCAATGTTTATGTCTCGTGTTCCTTTTGTTTAGACGGTCCGCACGGCCC
TTGAATTTTGCAGACGGTTGGCCTTTTTTCTTTGAAATGCCGCTATTCTT
TTGAGTATGATTACGGAGATAATTAATTCGCCCAACTTTCGGAAAAAAGT
TTAGAAATTATCTACGTTATTTTTAAAATGTAGACTGAGCGAAGCCGTAG
CGATATTAAAGATGGCTGACGAAACAACGATGAAAGTGAAGGAGAAAATT
TAGAGTTTCAGCGATTTTTGACAATTTTTTAACTTTAGAGAATTTGATGG
CCGTTAACGTAGAGGGGGGGTGGGGGTCAGAACCATAACGGCCAAATGTC
GTTAAAAAATTCGAAAGTCGAATGTCGATGGCCCCTTACTGTATAAAATC
GAAAGAGAAATCGTGTAATTTTTAATACGCAGTTCGTTAACTCAAATCAA
ATGACTTTGGAGGTTCGGTGAAATGGTGGTCGAATTGCCGTTGCATGTTT
TTTCAGATAGTCCCAAGTTGGAGCAGTTGACGGTAGATGCTTAGCCAGGC
TTAGCACCCATTCAAATAGTGATAAGCATGTTATTGCACCCTTAAAAAAA
TTATACAATTTTTATTGCCATGTTTATAATTACGCGTGTAAATCTCAGAA
GTTATTAAGAGGATTTCCCAGACCAAACTCATTTTAAAAATGTCAAAACA
TATTTAATGAAAAGCCATTTTGAAAGCTGAACTAATGAGAACAAATAAAA
ATAAAATAGAATTTCTTACATTTCCTACAGAAATATGTCTCACAGCTAGA
ACCTGTCCTGTTTGTATCAGATTATAAAAATACAGGATGGGTTTCCTGAC
CAAACTCAAACTGGTAATCCTTAAATTATGACTTCAAGATTTTCAACAAC
AAAAATTTGCAAATTTGGGCCAAATACCGGGGCTTTTGTTAAAATTGCTT
CATCAGATTTTGTTGAGTTTTCCTTACAACAAAGAAAAGATTGTTTATGT
TTATGTTTAAAACTTAGCTTGATTTTCAAAAATCATTTTGAATGTGCCTT
GGTGTTTCTTTCCTTTTCGTTTTGAAACATTTGTCATCATCATCCAGCAT
GTTTTAGCCTACCTCTATCAGGTAGGTCCATTCAACATGTTGCTTTTTGG
ACCTACCCCGGTGGGGTATAGATTAATCTATAAATTAATCTGTGTTCGTT
CGTCCGTCCATCCGTTCTTTCGTTCGTCTGTTACCAACTTTTCTCAGGAT
TGAATCATAGGAATCTTTTGGATTTTGGTACAAAGGTGCAAAATGGTGAT
GGCCAAAAAGTGATGGAGCTCGATTTTCGGGAAAACTATTTTTTGGGCTA
ATTTGGAAAAGTTGGATCATTAATTTTTTCTGATTTTTTGTATGAAAGTA
GGGTACCATCATAGGTAAAAGATGGCTCAAGCAGAGTTTTGCAAAAAAAA
TTTGTTGGCTCAAAAAACACATGTTTATCTACAAGAATCACTATTAATAA
GCATACATCAATGTTCTTAGTCAAATTACTCAATATTTTTTATGAGATAG
ATGTTTTTTTGCTCACTTTTGATGTGTTAAATGCATAACCACGTAGGTCC
ATAAAAGTATCACTTGTTTATTTTGGTCTTACTCCCACTAATTCTTGGGG
TTAACTTTAACCAAATTTCTAGGGGGGTCGGCGAGAAAAGCCTGTTAATA
CCCATTTCCTATTCTACTTTAACCAAACTTAACCAATTGATTGAACCGAT
TGAGCTTCATTGAACTCCATTGAACTCCATTGGGCAATTGAAAAAACACC
AGGCAAGAGGTACTTAATTAAGACATCACTCAAATTTTGGGGATCCTACT
GAGACAAAGTTTTCATTTTCAAAAATCTTTCTCTCTTTTAGAACTTTTCC
CANTACTGAGACAAATTTTCCTTTTCAAAAATCTTTCTCTCTTTCAGAAC
TTTTCCCTGTCCCATTTGATGGGTTTCGACTTGCAATCAACAAAGGCTTA
AGTAATCATTTCCAAGTCAGTCACACACTAAATTTGACGTCAGCTCCACA
AGGATCATCATATCACTTTGGTGCTACCTATGTTGGTGGATCACAGACAA
GTCCATCGGAAGTTAGTCTTGTTTAAATTTTGTATAAAATGTTTTTGTTG
ACATATAAAATAGCAGTCATTTGCCATCTTTCAATCAATGATGATGAATT
GATTGTCCTTTTTATTGTTTTTTTCTGTAATATAGAATAATACTTGATTG
TATCCAATAAGGAATTTAGATAATAGAGTTTGGAAACAATACAAAAAGAG
TTCAGGAAGTTGAAGAGGGCTTATTAGGTACCTTATTACTCACTGGTTGG
GGTTTTGTTTTAGAAAAAAATATTAATCAAGTATCATTCAATCAAAATAC
TGACTTAAAATTTCACAATGGCATCTTTCAGGCTTATCCAGTCATTCTTG
GAGATATTGACAACAGCGGAAGTTTGAGTGCGCAAATCATTCATCAGTTT
TCTCAAAGAATAAAAGGAAAATGTGTTGTCCAGGTATAAATAGCTTTTTT
GATAAGTATTTATCTTTTTAAATGGTTTTTGTGGTCATTTCTTGCAATTA
CTCTTTGATTTTGTACTCTCAAAATATTCTAAATTAACATACTATCGAGT
GACATTTACTTTTAATGGTCGACACATAGAATTTGAACATGAAACCTGTT
AAAAATCTTCAATATAATTATAGAGTCAAAAACAAGAATTAGCCATGGTA
CAATTTGATGCTGATTATCGAGGTGATGATTTCACAGCCACCTGTACCCT
TGGAAATATTGATGTAATTAATGAGTCTGGTATAATTGTTGGTCATTACT
TACAACGTCTGACAAAAAGTTTAGATCTTGGTGCCGAAATACTTTATCAT
TATGGACAAGGCCAAGAATCTGCTACTCTTTCAGTAGCAGGAAAATATAC
ACAAGAAAAATGGATAGGAGCTGCTCAGATAAACCCAGGAGGCTGGCATG
TTTCTTATTATCATAAAGCAAACGATAATATACAGGTTGGAGTTGATTAT
GAATATAGTTCACGGATGCAAGACTCTTGCGTAAGTTTAGGTTACCAAGT
GGATGTTCCTAAAGCTAATGTTACTTATCGTGGTTTGGTTGATACTAACT
GGACTGTTGCTGGTATATTCGAGAAAAGATTACACCCATTACCATTTTCT
TTTGTATTAAGTGGAATGTTAAACCATGTCAAGAATCAATGTCGGTTCGG
TTTTGCATTACAAATTGGTTAGTTTTTCTAATCGTCAATTACCATTACAT
AATGAGACTATCTAATTATGTGCTTTGAGCACTTGAAAATATGTGAAGAA
CAGAAATCATACAGTTGCCTAAATGCTGGCTGTAAAATAGAAAAATAAAA
ACGAACAGATATTTTTTGTCATAATTTTTTTACCTGTCAGAAGAATTTCA
GAAATCAGCTTTTAAAGGACCTCACATTCATAGAATATATTCTACTTCCA
ATATTCAACTTTTTGTTTAAAATGTAAGTTATAGAGTTTTTAGAACACAT
TTTTTATTTCTTTTATTTCATTGATACTATAAGACGATGGGTTTTAGACC
TTCTATCTGGTGACCCTGTGAAAGCTGCCCAGGAAAGTTAATTTTAGTAA
CTCTAAGGAAAACCTTGAAAACACTTTTTGCATGTATACATTAGTGAATG
ACTTTGTGTTTTCCAAAACCCTTTTAAAATTCTAGAAGCAATTGGTTTTA
TATTTTCATGACAGTTTTGACTTATACTGCAGCCTGAAATGTTGTATTAT
ATTATTTTTGATGTTATAGATAGTTTAGAATAAAACTTAGAAATCTCTAC
TTTATAAATAAGCATACAATGTAATGAAAACAAGCTTGTCTTCAGATTTT
TCCTCTAATAGTCTTTCTTCTAGGTCGTTCAAAAAGCTGTATTTTATTTA
CAAAT Coding sequence (CDS) from alignment at scaffold_331:749152..756356- >TCONS_00059906 ID=TCONS_00059906|Name=TCONS_00059906|organism=Clytia hemisphaerica|type=CDS|length=3864bp|location=Sequence derived from alignment at scaffold_331:749152..756356- (Clytia hemisphaerica)
AGTCAAAAACAAGAATTAGCCATGGTACAATTTGATGCTGATTATCGAGG
TGATGATTTCACAGCCACCTGTACCCTTGGAAATATTGATGTAATTAATG
AGTCTGGTATAATTGTTGGTCATTACTTACAACGTCTGACAAAAAGTTTA
GATCTTGGTGCCGAAATACTTTATCATTATGGACAAGGCCAAGAATCTGC
TACTCTTTCAGTAGCAGGAAAATATACACAAGAAAAATGGATAGGAGCTG
CTCAGATAAACCCAGGAGGCTGGCATGTTTCTTATTATCATAAAGCAAAC
GATAATATACAGGTTGGAGTTGATTATGAATATAGTTCACGGATGCAAGA
CTCTTGCGTAAGTTTAGGTTACCAAGTGGATGTTCCTAAAGCTAATGTTA
CTTATCGTGGTTTGGTTGATACTAACTGGACTGTTGCTGGTATATTCGAG
AAAAGATTACACCCATTACCATTTTCTTTTGTATTAAGTGGAATGTTAAA
CCATGTCAAGAATCAATGTCGGTTCGGTTTTGCATTACAAATTGGTTAGG
CTTATCCAGTCATTCTTGGAGATATTGACAACAGCGGAAGTTTGAGTGCG
CAAATCATTCATCAGTTTTCTCAAAGAATAAAAGGAAAATGTGTTGTCCA
GAACTTTTCCCTGTCCCATTTGATGGGTTTCGACTTGCAATCAACAAAGG
CTTAAGTAATCATTTCCAAGTCAGTCACACACTAAATTTGACGTCAGCTC
CACAAGGATCATCATATCACTTTGGTGCTACCTATGTTGGTGGATCACAG
ACAAGTCCATCGGAAATGGGCAATACTTACACATTATATGCTGCTGAAGG
GATGGCTCCTCCTCCAGTTGACCCTGCTCCACAGTCTCCACCAACTAGTC
AATCTATCTTGACTGCTGTCAGCAACAATCCCGGTGTTTTCGAAGACTTG
CACAAAAAGTGCAAAGAGTCAAAAACAAGAATTAGCCATGGTACAATTTG
ATGCTGATTATCGAGGTGATGATTTCACAGCCACCTGTACCCTTGGAAAT
ATTGATGTAATTAATGAGTCTGGTATAATTGTTGGTCATTACTTACAACG
TCTGACAAAAAGTTTAGATCTTGGTGCCGAAATACTTTATCATTATGGAC
AAGGCCAAGAATCTGCTACTCTTTCAGTAGCAGGAAAATATACACAAGAA
AAATGGATAGGAGCTGCTCAGATAAACCCAGGAGGCTGGCATGTTTCTTA
TTATCATAAAGCAAACGATAATATACAGGTTGGAGTTGATTATGAATATA
GTTCACGGATGCAAGACTCTTGCGTAAGTTTAGGTTACCAAGTGGATGTT
CCTAAAGCTAATGTTACTTATCGTGGTTTGGTTGATACTAACTGGACTGT
TGCTGGTATATTCGAGAAAAGATTACACCCATTACCATTTTCTTTTGTAT
TAAGTGGAATGTTAAACCATGTCAAGAATCAATGTCGGTTCGGTTTTGCA
TTACAAATTGGTTAGGCTTATCCAGTCATTCTTGGAGATATTGACAACAG
CGGAAGTTTGAGTGCGCAAATCATTCATCAGTTTTCTCAAAGAATAAAAG
GAAAATGTGTTGTCCAGAACTTTTCCCTGTCCCATTTGATGGGTTTCGAC
TTGCAATCAACAAAGGCTTAAGTAATCATTTCCAAGTCAGTCACACACTA
AATTTGACGTCAGCTCCACAAGGATCATCATATCACTTTGGTGCTACCTA
TGTTGGTGGATCACAGACAAGTCCATCGGAAATGGGCAATACTTACACAT
TATATGCTGCTGAAGGGATGGCTCCTCCTCCAGTTGACCCTGCTCCACAG
TCTCCACCAACTAGTCAATCTATCTTGACTGCTGTCAGCAACAATCCCGG
TGTTTTCGAAGACTTGCACAAAAAGTGCAAAGAGTCAAAAACAAGAATTA
GCCATGGTACAATTTGATGCTGATTATCGAGGTGATGATTTCACAGCCAC
CTGTACCCTTGGAAATATTGATGTAATTAATGAGTCTGGTATAATTGTTG
GTCATTACTTACAACGTCTGACAAAAAGTTTAGATCTTGGTGCCGAAATA
CTTTATCATTATGGACAAGGCCAAGAATCTGCTACTCTTTCAGTAGCAGG
AAAATATACACAAGAAAAATGGATAGGAGCTGCTCAGATAAACCCAGGAG
GCTGGCATGTTTCTTATTATCATAAAGCAAACGATAATATACAGGTTGGA
GTTGATTATGAATATAGTTCACGGATGCAAGACTCTTGCGTAAGTTTAGG
TTACCAAGTGGATGTTCCTAAAGCTAATGTTACTTATCGTGGTTTGGTTG
ATACTAACTGGACTGTTGCTGGTATATTCGAGAAAAGATTACACCCATTA
CCATTTTCTTTTGTATTAAGTGGAATGTTAAACCATGTCAAGAATCAATG
TCGGTTCGGTTTTGCATTACAAATTGGTTAGGCTTATCCAGTCATTCTTG
GAGATATTGACAACAGCGGAAGTTTGAGTGCGCAAATCATTCATCAGTTT
TCTCAAAGAATAAAAGGAAAATGTGTTGTCCAGAACTTTTCCCTGTCCCA
TTTGATGGGTTTCGACTTGCAATCAACAAAGGCTTAAGTAATCATTTCCA
AGTCAGTCACACACTAAATTTGACGTCAGCTCCACAAGGATCATCATATC
ACTTTGGTGCTACCTATGTTGGTGGATCACAGACAAGTCCATCGGAAATG
GGCAATACTTACACATTATATGCTGCTGAAGGGATGGCTCCTCCTCCAGT
TGACCCTGCTCCACAGTCTCCACCAACTAGTCAATCTATCTTGACTGCTG
TCAGCAACAATCCCGGTGTTTTCGAAGACTTGCACAAAAAGTGCAAAGAG
TCAAAAACAAGAATTAGCCATGGTACAATTTGATGCTGATTATCGAGGTG
ATGATTTCACAGCCACCTGTACCCTTGGAAATATTGATGTAATTAATGAG
TCTGGTATAATTGTTGGTCATTACTTACAACGTCTGACAAAAAGTTTAGA
TCTTGGTGCCGAAATACTTTATCATTATGGACAAGGCCAAGAATCTGCTA
CTCTTTCAGTAGCAGGAAAATATACACAAGAAAAATGGATAGGAGCTGCT
CAGATAAACCCAGGAGGCTGGCATGTTTCTTATTATCATAAAGCAAACGA
TAATATACAGGTTGGAGTTGATTATGAATATAGTTCACGGATGCAAGACT
CTTGCGTAAGTTTAGGTTACCAAGTGGATGTTCCTAAAGCTAATGTTACT
TATCGTGGTTTGGTTGATACTAACTGGACTGTTGCTGGTATATTCGAGAA
AAGATTACACCCATTACCATTTTCTTTTGTATTAAGTGGAATGTTAAACC
ATGTCAAGAATCAATGTCGGTTCGGTTTTGCATTACAAATTGGTTAGGCT
TATCCAGTCATTCTTGGAGATATTGACAACAGCGGAAGTTTGAGTGCGCA
AATCATTCATCAGTTTTCTCAAAGAATAAAAGGAAAATGTGTTGTCCAGA
ACTTTTCCCTGTCCCATTTGATGGGTTTCGACTTGCAATCAACAAAGGCT
TAAGTAATCATTTCCAAGTCAGTCACACACTAAATTTGACGTCAGCTCCA
CAAGGATCATCATATCACTTTGGTGCTACCTATGTTGGTGGATCACAGAC
AAGTCCATCGGAAATGGGCAATACTTACACATTATATGCTGCTGAAGGGA
TGGCTCCTCCTCCAGTTGACCCTGCTCCACAGTCTCCACCAACTAGTCAA
TCTATCTTGACTGCTGTCAGCAACAATCCCGGTGTTTTCGAAGACTTGCA
CAAAAAGTGCAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059906-exon-scaffold_331-1575043694:755987..756356 | TCONS_00059906-exon-scaffold_331-1575043694:755987..756356 | Clytia hemisphaerica | exon |
| TCONS_00059906-exon-scaffold_331-1575043694:750996..751159 | TCONS_00059906-exon-scaffold_331-1575043694:750996..751159 | Clytia hemisphaerica | exon |
| TCONS_00059906-exon-scaffold_331-1575043694:750574..750675 | TCONS_00059906-exon-scaffold_331-1575043694:750574..750675 | Clytia hemisphaerica | exon |
| TCONS_00059906-exon-scaffold_331-1575043694:749152..750383 | TCONS_00059906-exon-scaffold_331-1575043694:749152..750383 | Clytia hemisphaerica | exon |
| TCONS_00059906-exon-scaffold_331-1510915933:755987..756356 | TCONS_00059906-exon-scaffold_331-1510915933:755987..756356 | Clytia hemisphaerica | exon |
| TCONS_00059906-exon-scaffold_331-1510915933:750996..751159 | TCONS_00059906-exon-scaffold_331-1510915933:750996..751159 | Clytia hemisphaerica | exon |
| TCONS_00059906-exon-scaffold_331-1510915933:750574..750675 | TCONS_00059906-exon-scaffold_331-1510915933:750574..750675 | Clytia hemisphaerica | exon |
| TCONS_00059906-exon-scaffold_331-1510915933:749152..750383 | TCONS_00059906-exon-scaffold_331-1510915933:749152..750383 | Clytia hemisphaerica | exon |
| TCONS_00059906-exon-scaffold_331-1491911889:755987..756356 | TCONS_00059906-exon-scaffold_331-1491911889:755987..756356 | Clytia hemisphaerica | exon |
| TCONS_00059906-exon-scaffold_331-1491911889:750996..751159 | TCONS_00059906-exon-scaffold_331-1491911889:750996..751159 | Clytia hemisphaerica | exon |
| TCONS_00059906-exon-scaffold_331-1491911889:750574..750675 | TCONS_00059906-exon-scaffold_331-1491911889:750574..750675 | Clytia hemisphaerica | exon |
| TCONS_00059906-exon-scaffold_331-1491911889:749152..750383 | TCONS_00059906-exon-scaffold_331-1491911889:749152..750383 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:749152..756356 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR027246 | Porin_Euk/Tom40 |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005741 | mitochondrial outer membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0055085 | transmembrane transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0005741 |
mitochondrial outer membrane |
Blast
BLAST of TCONS_00059906 vs. Swiss-Prot (Human)
Match: TOM40 (Mitochondrial import receptor subunit TOM40 homolog OS=Homo sapiens GN=TOMM40 PE=1 SV=1) HSP 1 Score: 318.161 bits (814), Expect = 5.397e-102 Identity = 150/284 (52.82%), Postives = 203/284 (71.48%), Query Frame = 1
Query: 331 NPGVFEDLHKKCKELFPVPFDGFRLAINKGLSNHFQVSHTLNLTSAPQGSSYHFGATYVGGSQTSPSEAYPVILGDIDNSGSLSAQIIHQFSQRIKGKCVVQSQKQELAMVQFDADYRGDDFTATCTLGNIDVINESGIIVGHYLQRLTKSLDLGAEILYHYGQGQESATLSVAGKYTQEKWIGAAQINPGGWHVSYYHKANDNIQVGVDYEYSSRMQDSCVSLGYQVDVPKANVTYRGLVDTNWTVAGIFEKRLHPLPFSFVLSGMLNHVKNQCRFGFALQIG 1182
NPG FE+ H+KCKELFP+ +G +L +NKGLSNHFQV+HT+ L++ + S+YHFG TYVG Q SP+EA+PV++GD+DNSGSL+AQ+IHQ ++ K +Q+Q+ + Q D +YRG DFTA TLGN DV+ SGI+V HYLQ +T L LG E++YH G+E +S+AGKYT W+ + G H +YYHKA+D +QVGV++E S+RMQD+ VS GYQ+D+PKAN+ ++G VD+NW V EK+L PLP + L LNH KN+ + GF L IG
Sbjct: 79 NPGTFEECHRKCKELFPIQMEGVKLTVNKGLSNHFQVNHTVALSTIGE-SNYHFGVTYVGTKQLSPTEAFPVLVGDMDNSGSLNAQVIHQLGPGLRSKMAIQTQQSKFVNWQVDGEYRGSDFTAAVTLGNPDVLVGSGILVAHYLQSITPCLALGGELVYHRRPGEEGTVMSLAGKYTLNNWLATVTLGQAGMHATYYHKASDQLQVGVEFEASTRMQDTSVSFGYQLDLPKANLLFKGSVDSNWIVGATLEKKLPPLPLTLALGAFLNHRKNKFQCGFGLTIG 361
The following BLAST results are available for this feature:
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