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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059905 ID=TCONS_00059905|Name=TCONS_00059905|organism=Clytia hemisphaerica|type=transcript|length=2432bpRun BLAST on NCBI protein sequence of TCONS_00059905-protein >TCONS_00059905-protein ID=TCONS_00059905-protein|Name=TCONS_00059905-protein|organism=Clytia hemisphaerica|type=polypeptide|length=678bp MPKFKLKHIVSFSSEDLKNPAENLLKPETYFKWRSATSGERQVSAIIQLERun BLAST on NCBI transcript from alignment at scaffold_331:728172..749033- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00059905 ID=TCONS_00059905|Name=TCONS_00059905|organism=Clytia hemisphaerica|type=transcript|length=20862bp|location=Sequence derived from alignment at scaffold_331:728172..749033- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_331:728172..749033- >TCONS_00059905 ID=TCONS_00059905|Name=TCONS_00059905|organism=Clytia hemisphaerica|type=CDS|length=36666bp|location=Sequence derived from alignment at scaffold_331:728172..749033- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00059905 vs. Swiss-Prot (Human)
Match: XRCC1 (DNA repair protein XRCC1 OS=Homo sapiens GN=XRCC1 PE=1 SV=2) HSP 1 Score: 182.185 bits (461), Expect = 1.946e-48 Identity = 88/192 (45.83%), Postives = 135/192 (70.31%), Query Frame = 3
Query: 30 MPKFKLKHIVSFSSEDLKNPAENLLKPETYFKWRSATSGERQVSAIIQLEKANKIHSVDVGNNGSAFVEVLVGRSSWAASEE-FKVLQPASSFMSPADSKANKDLYRVRMFGNEGFTKSVSEEKWDQVKFVCTQPYNQNEAYGLSFVTIHSX----XXXXXXXXXXTIQLGRFKLRSTSDDEEDTISTGSFF 590
MP+ +L+H+VS SS+D + AENLLK +TY KWR+A +GE+ +S ++QLEK +IHSVD+GN+GSAFVEVLVG S+ A E+ ++VL SSFMSP++S++ + RVRMFG + ++ +E++WD+VK VC+QPY+++ +GLSFV HSP K +LG+F+++ D+ +++ G+ F
Sbjct: 1 MPEIRLRHVVSCSSQDSTHCAENLLKADTYRKWRAAKAGEKTISVVLQLEKEEQIHSVDIGNDGSAFVEVLVGSSAGGAGEQDYEVLLVTSSFMSPSESRSGSNPNRVRMFGPDKLVRAAAEKRWDRVKIVCSQPYSKDSPFGLSFVRFHSPPDKDEAEAPSQKVTVTKLGQFRVKE-EDESANSLRPGALF 191 HSP 2 Score: 95.1301 bits (235), Expect = 4.526e-20 Identity = 39/95 (41.05%), Postives = 62/95 (65.26%), Query Frame = 3
Query: 1779 ELPDFLEEKGFLLYGKLSDKERRLCKRYITAYGGTLHEYMGDGVTYVLSKNDWGSDFDDALNENKDLVFLRPTWLFKCHEEQKLVDTEAH-IIPK 2060
ELPDF + K F LYG+ ERR RY+TA+ G L + M D V +V++ +W F++AL +N L F+RP W++ C+E+QKL+ + + ++P+
Sbjct: 538 ELPDFFQGKHFFLYGEFPGDERRKLIRYVTAFNGELEDNMSDRVQFVITAQEWDPSFEEALMDNPSLAFVRPRWIYSCNEKQKLLPHQLYGVVPQ 632 HSP 3 Score: 84.3445 bits (207), Expect = 9.467e-17 Identity = 38/72 (52.78%), Postives = 51/72 (70.83%), Query Frame = 3
Query: 1044 LDKVVFVLSGFVNPQRGEIRDLAMEMGARFSQQWDNNTCTHLICAFPNTPKFREVKG-KGKIVRETWIKSCY 1256
L VV VLSGF NP R E+RD A+E+GA++ W ++ THLICAF NTPK+ +V G G+IVR+ W+ C+
Sbjct: 320 LQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDS-THLICAFANTPKYSQVLGLGGRIVRKEWVLDCH 390 The following BLAST results are available for this feature:
BLAST of TCONS_00059905 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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