|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059897 ID=TCONS_00059897|Name=TCONS_00059897|organism=Clytia hemisphaerica|type=transcript|length=2105bp
CACACTGTTCCACATCAGAAGCCTCTCGTGTTTTAGTATAATTTGCAAAA
TCTAAAcatgaaagaaaaactttgGAATCATTATAAAGTAAACTCCCTAT
CAGTGGTCGATATGGAGCATTATCTCGATACAAGCAATACAACATCTCTT
GCATCTGCTTTGAAGTCTGCATATGCTGTATTCAATCAAACCATTCAAAT
GTACTCCTTAGATGAAATATGTATTGGATTCAATGGTGGTAAGGACTGCA
CTGCCGTTCTGCATTTATACGTTGCATTTATCAAGAAATTCTACCCAGAT
AATACTAAAAGGATTACTGGGCTTTATTTAAAGAATGCTAACCCGTTTAA
AGAAGCtcaagattttattaaaaactgTGAAGCGAATTATAATATTGATA
TGATTGTTATTCCGGCTAGTATTAAAGAAGGcttggaaaatttgaaagaa
tcgCACCCGAAGATTAAAGCTGTGATCATGGGGACACGTCGCCACGATCC
TTACTCATCGCAACTGAAATCGTTTACAATGACCGATGTTAGCTGGCCTA
GTTACATGCGAGTATTCCCGATCCTAGATTGGTCGTATGCCGAAGTATGG
GATTTTTTGAGAACTTTTGATTTACCTTACTGTCGTTTGTATGATGAAGG
ATATACTTCTTTGGGTGACCCTAACAATACACTTAAGAACCAAAGTTTAT
TATTGAAAGATGGTAGATACTCACCTGCGTACATGTTGCAAGAAGAAAGC
TTGGAACGCGAAGGACGAAATAAATGATGGCGACTTTCTTCAAAGAAACA
TTTTATCAAACACCTTGCTTATCCTTATCAAACACCAAACACCTCAAGGG
GATTGGGTTCAAGTTAACAAGGGTTGATTGACGTTATGTATCAAATGTTA
GAGATGTTAATGTAATAAATTCAGACACTTGACGTCTGTTAACTCTGGTG
AACTTGAAACTTTCATCTAGTTAGGGGCAAGAGTTGATAGATGTAAACAA
TGTATTCGACGTCCGAATAACAATTAACCATTTCAGTCCCAGAGACCCAC
AGAGCGAGTTCCTTCGGGGCCAAACTTAACCGGGCTATATCTCCAGAGCT
AAAAGATTCCCGGAACTTTCGTAGCTACCATCGGaaaaagcatgaaattc
tgaaGACAGCAGGTTGGTTTTGAGGCGCCCTTACCTCTTAACCGACGGTG
CGAAACTTTTGAATTCCATTCAAAAAGTGCAAAGGTCTAAGACTGAAAGG
GTTACGACGTGTGTTTGAGCTGGACTaataaatgttaaaaaattcaTATC
ACCGCAATCGATAATGACTCTCCTTGAAAAATAATCTCTCTATTTCGATA
GCTAAAGTTAGTTAGATCTGCTCGATTTCAACGAAGAAGCCACTGTATGT
ACAATGACCACCACCTGCCCCACGCTTTTGTTTTGATGCGTTCTCTACAT
TCTACTAAacgacccgggggggggggcactcaaggttaATGAGGTGCGGC
TCTTAATGGTATATTTTCCTTCCCAAAGTGCATTGTAAGAGTCAAAATCA
GCAAACGATCTTTGCCCTAAAAATCCATTCGCTTTGAATTTTCACTCTTT
TTTTATCTATGTGGAAACCATATCAGCGAAATTCGATTTATTCCCTCACA
TGTAAAGTAAATGCACTTTGGTTCATATACCTTATATTATAGCCCTTGAT
AGCCGTTGATATGAAAACCTTCTTAAAGGTCTGTTTATACTGTGGCATCT
CGAATGAGACTCTAATTATGTCTGTGTTTAACTGTTTATTGATTTATTAA
GTTAGTATTTTCTTGTACTTTTGCATTAACAACGTATGGATATTAATAGA
GAGgtgtattttatatttttacatttttacgctgatgatattttcaaatt
tttagattctgtattttcattgattttcatcattttttttatctagTGGT
AGATTATGTTATTATTTACATGAGTGATACACCTTTATTAAATTGATCGG
TTTTCATGATCTCGTACTAAAATTTatcttatatttttttgaacattttc
ataAGGTCTTTGGCATCTTACTCGAATTCTTTGAACAAAAGTATTCAAAT
GTCAC Run BLAST on NCBI transcript from alignment at scaffold_331:567092..571796- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059897 ID=TCONS_00059897|Name=TCONS_00059897|organism=Clytia hemisphaerica|type=transcript|length=4705bp|location=Sequence derived from alignment at scaffold_331:567092..571796- (Clytia hemisphaerica)
CACACTGTTCCACATCAGAAGCCTCTCGTGTTTTAGTATAATTTGCAAAA
TCTAAACATGAAAGAAAAACTTTGGAATCATTATAAAGGTATGACTTTTG
TTTATATTTAATACTTTTGGATGCATTACATGTTTATGTTTTGTTTGTGC
ATGAGTTATAATGATCTTGAGAGATCCCCTTTATTTCTCAATGTTCCCTT
CTCTACGACGATTGCTTAAATGGTTGTAGGAGAACTTGAGATCATATCAT
GACATTCTTAAAGAATACAGGGCTTTATGGATCATATAATAATAACAATG
CTCTATGAGTAAACACGGCAAGATAGAAACAGAGAATGCAATGTGATCAC
TTTGTGATTTTTGATAATCGATAGGTAAAGGTAATTAGTAAGACAGTACA
CCCCTGTCTCACAGACCCACTGGTAGTAAAATTTTACTGGAACTTTTTTC
CTCAGTGGGGATAAACATTCCTATTGAATTCCCAATGGGGATAAAAATTC
TATTGTTCCAAGGTAAAAAGATCCAGTGGGGATGGTTTTGGAGTACAATT
TTTAAGCATAGAATTTCGAGTGGGGATGAAATCAAAGTCATTTTCCCAGT
GGGGCTGAAATTCCCACCGGGGAAATTTTCCAGTGGGACTGGGGTCCCAG
TGGGTCTGTGATACAGGGGTGTATTAAGTTAGTAAGACTAGTCAAAAGCT
AAGAGATTTCTAGTTTTCTAGCCGAAACCTAAGACTATATTATTGGGCAT
TTCAGTAGACAGAAATTTTTCAGTCAGGTATTTATACTCGAGTAATACAA
ACTTAAGAAAAGTCGTTGAGTATATAATATATATTGGAGGTTTCAATTTT
GTGTCGTATAAGCATAAAATTGCGTTGATTTTTAACATTAATGCTCCAAA
ACGATTAAGGTATCATTAAAGATTGCAACAATTATGCTATTTAAGTCTGC
TATTTATCTTTTTTTCGATTGATAATTAAATGGTCGACTCATTAGACTTC
CTCTTACATAATTAGTGAAGCTGACTTTTTGTTCCTTTTGGATTTAGAGC
CCTATACATTTTACCATAAGAAGCCATCTTGCCTCAAGGCAATTTTTGCT
TTGTTTGGATGATTTTTTATTTGGAAAATGGTATTTGAAACTGTATTTTT
GAAGTCTATTTGAAAATTCCAGCTTAACTATGTACTCTCGGGTACCTTAT
AGCTGTTCCCCCCTGCTAATTAGTTTTTGGGAAAATGCTTTTGAAAGTTC
CCCTCTTTTGTCCTAATTCTGCTGTATTAGCCTCCTTTTCAAAAATTTTC
CACCCAGGTAATTTTTATTCCAATCCCCCCTTATTAAGTTTTGAGATTTT
TTCCAATCCCTTGCGTTTACTGAACTGTTCGATAATACTACAACGACTTC
TTCTAATAGAGGTTTAATGAGGTCTTTCAATTCAAGTTAATTATATCTCG
ACTTCTTTTCTGTCCGTTTGTTTATCACCGTTGTTTGGCTTATTATAATG
TTTACTATACATCTGAATACATATGTTGGTGTTTTTTTAGAACGTACTAA
ATTGTGTTTTGGGTATCTCCTGTTTAAGACAACTTTTTCTTAATGAAAAC
CTTTACATGAGTATTTCAATTTATTTTGAGAAAAAGAGATAGGATGAAAT
ATTCCGATTTTTTTGGTCCGGCTTTAATTGGATAAGTTAAACAGCTACAA
TTTAAGGACAAAATTAGGAGTAATCTAGGATGAGAGCTTTCTTCTGTGCG
AATGGATGAAAAATTTCCCCAGTTAATTACTCCATATATAAAAGATTTTG
TCTTGAAATTATACTCTTAAATGTAAATTATTAGAAAACGTAAGCTAAAT
GATGAAAGGGGTAGAAAAGGATAAAAAAATATTGATAAAAAACGCGCTGT
CCAAAAGAATGTTTTAAAAACTGATGGATATTATTTTGAGGATGAAAATT
ATATAGCCTATAGTCCTATATAAGTGTAATAGTAAAGAATGTATCTTTCA
GAAAATAGCAATATAAAACAAGGTAAATCCTTTTGTGAGTAATTTTGTCT
ATTTACTTGAGAAATGGTTTTTTAGACTCAGCAAGCCTTAAGATGTTTTT
AAGTTGTTCTTTATATTTTGGCCATCGAAGCCTTATGTTCTTATATAGTT
TGTTCTTATAAAAGAACGTCTACCTTAAGGGAAGAAATTTTTCCGCGAAA
TGAATAAAAACCACCTTGGACGATATTCACTTAAATTTTTATCCCTAAAA
AATTCAAGAAAATCCTTCATTCGCGAATTTTTTCCGCGAAATACGCAATT
TTCGCAACCTTAATTCGCGAAAATATCTTCCGCGAAAATTTCTTCCCTTA
AGGTATCATTGTTAAGGCTTTGGATGAACTTTGAAACTATGCGTTTGCTG
GGTAAGAACACTTCACATATTAGCACATGCATAATTAAAGGTTTATTTTT
ACATAAGTGATTCCGTTTCATATTAGACACGTGATTCATATCAGTGTATG
TCTATTGTTATTATGCTGATATAAGCAAAATGTCTTTCTTTTCCTCTTTC
TGACCAATCTTCCTCCACATCCTTATTAATCCAATGTGAAAAGCTTGTAA
TCCTTAAAATTGATGAGTAAGCAAACAATTCGCTCTCATGTAAAAACAAA
ACCTTTAATCTACTCCATTCTTTCTCTTTTCTTTACAGTAAACTCCCTAT
CAGTGGTCGATATGGAGCATTATCTCGATACAAGCAATACAACATCTCTT
GCATCTGCTTTGAAGTCTGCATATGCTGTATTCAATCAAACCATTCAAAT
GTACTCCTTAGATGAAATATGTATTGGATTCAATGGTGGTAAGGACTGCA
CTGCCGTTCTGCATTTATACGTTGCATTTATCAAGAAATTCTACCCAGAT
AATACTAAAAGGATTACTGGGCTTTATTTAAAGAATGCTAACCCGTTTAA
AGAAGCTCAAGATTTTATTAAAAACTGTGAAGCGAATTATAATATTGATA
TGATTGTTATTCCGGCTAGTATTAAAGAAGGCTTGGAAAATTTGAAAGAA
TCGCACCCGAAGATTAAAGCTGTGATCATGGGGACACGTCGCCACGATCC
TTACTCATCGCAACTGAAATCGTTTACAATGACCGATGTTAGCTGGCCTA
GTTACATGCGAGTATTCCCGATCCTAGATTGGTCGTATGCCGAAGTATGG
GATTTTTTGAGAACTTTTGATTTACCTTACTGTCGTTTGTATGATGAAGG
ATATACTTCTTTGGGTGACCCTAACAATACACTTAAGAACCAAAGTTTAT
TATTGAAAGATGGTAGATACTCACCTGCGTACATGTTGCAAGAAGAAAGC
TTGGAACGCGAAGGACGAAATAAATGATGGCGACTTTCTTCAAAGAAACA
TTTTATCAAACACCTTGCTTATCCTTATCAAACACCAAACACCTCAAGGG
GATTGGGTTCAAGTTAACAAGGGTTGATTGACGTTATGTATCAAATGTTA
GAGATGTTAATGTAATAAATTCAGACACTTGACGTCTGTTAACTCTGGTG
AACTTGAAACTTTCATCTAGTTAGGGGCAAGAGTTGATAGATGTAAACAA
TGTATTCGACGTCCGAATAACAATTAACCATTTCAGTCCCAGAGACCCAC
AGAGCGAGTTCCTTCGGGGCCAAACTTAACCGGGCTATATCTCCAGAGCT
AAAAGATTCCCGGAACTTTCGTAGCTACCATCGGAAAAAGCATGAAATTC
TGAAGACAGCAGGTTGGTTTTGAGGCGCCCTTACCTCTTAACCGACGGTG
CGAAACTTTTGAATTCCATTCAAAAAGTGCAAAGGTCTAAGACTGAAAGG
GTTACGACGTGTGTTTGAGCTGGACTAATAAATGTTAAAAAATTCATATC
ACCGCAATCGATAATGACTCTCCTTGAAAAATAATCTCTCTATTTCGATA
GCTAAAGTTAGTTAGATCTGCTCGATTTCAACGAAGAAGCCACTGTATGT
ACAATGACCACCACCTGCCCCACGCTTTTGTTTTGATGCGTTCTCTACAT
TCTACTAAACGACCCGGGGGGGGGGGCACTCAAGGTTAATGAGGTGCGGC
TCTTAATGGTATATTTTCCTTCCCAAAGTGCATTGTAAGAGTCAAAATCA
GCAAACGATCTTTGCCCTAAAAATCCATTCGCTTTGAATTTTCACTCTTT
TTTTATCTATGTGGAAACCATATCAGCGAAATTCGATTTATTCCCTCACA
TGTAAAGTAAATGCACTTTGGTTCATATACCTTATATTATAGCCCTTGAT
AGCCGTTGATATGAAAACCTTCTTAAAGGTCTGTTTATACTGTGGCATCT
CGAATGAGACTCTAATTATGTCTGTGTTTAACTGTTTATTGATTTATTAA
GTTAGTATTTTCTTGTACTTTTGCATTAACAACGTATGGATATTAATAGA
GAGGTGTATTTTATATTTTTACATTTTTACGCTGATGATATTTTCAAATT
TTTAGATTCTGTATTTTCATTGATTTTCATCATTTTTTTTATCTAGTGGT
AGATTATGTTATTATTTACATGAGTGATACACCTTTATTAAATTGATCGG
TTTTCATGATCTCGTACTAAAATTTATCTTATATTTTTTTGAACATTTTC
ATAAGGTCTTTGGCATCTTACTCGAATTCTTTGAACAAAAGTATTCAAAT
GTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059897-exon-scaffold_331-1575043694:571709..571796 | TCONS_00059897-exon-scaffold_331-1575043694:571709..571796 | Clytia hemisphaerica | exon |
| TCONS_00059897-exon-scaffold_331-1575043694:567092..569108 | TCONS_00059897-exon-scaffold_331-1575043694:567092..569108 | Clytia hemisphaerica | exon |
| TCONS_00059897-exon-scaffold_331-1510915933:571709..571796 | TCONS_00059897-exon-scaffold_331-1510915933:571709..571796 | Clytia hemisphaerica | exon |
| TCONS_00059897-exon-scaffold_331-1510915933:567092..569108 | TCONS_00059897-exon-scaffold_331-1510915933:567092..569108 | Clytia hemisphaerica | exon |
| TCONS_00059897-exon-scaffold_331-1491911889:571709..571796 | TCONS_00059897-exon-scaffold_331-1491911889:571709..571796 | Clytia hemisphaerica | exon |
| TCONS_00059897-exon-scaffold_331-1491911889:567092..569108 | TCONS_00059897-exon-scaffold_331-1491911889:567092..569108 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:567092..571796 - |
Blast
BLAST of TCONS_00059897 vs. Swiss-Prot (Human)
Match: FAD1 (FAD synthase OS=Homo sapiens GN=FLAD1 PE=1 SV=1) HSP 1 Score: 203.756 bits (517), Expect = 2.817e-56 Identity = 97/234 (41.45%), Postives = 144/234 (61.54%), Query Frame = 1
Query: 82 YKVNSLSVVDMEHYLDTSNTTSLASALKSAYAVFNQTIQMYSLDEICIGFNGGKDCTAVLHLYVAFIKKFYPDNTKRITGLYLKNANPFKEAQDFIKNCEANYNIDMIVIPASIKEGLENLKESHPKIKAVIMGTRRHDPYSSQLKSFTMTDVSWPSYMRVFPILDWSYAEVWDFLRTFDLPYCRLYDEGYTSLGDPNNTLKNQSL-LLKDG---RYSPAYMLQEESLEREGRN 771
Y N++ Y + +SL + A ++ YSL ++C+GFNGGKDCTA+LHL+ A +++ PD + LY+++ +PF E + F+++ YN+ M+ S+K+ L L+ HP+++AV+MGTRR DPYS L F+ TD WP++MR+ P+LDW+Y ++WDFLR +PYC LYD GYTSLG NT++N +L L G Y PAY+L+ E ER R
Sbjct: 354 YMPNAVEQASEAVYKLAESGSSLGKKVAGALQTIETSLAQYSLTQLCVGFNGGKDCTALLHLFHAAVQRKLPDVPNPLQILYIRSISPFPELEQFLQDTIKRYNLQMLEAEGSMKQALGELQARHPQLEAVLMGTRRTDPYSCSLCPFSPTDPGWPAFMRINPLLDWTYRDIWDFLRQLFVPYCILYDRGYTSLGSRENTVRNPALKCLSPGGHPTYRPAYLLENEEEERNSRT 587
The following BLAST results are available for this feature:
|
