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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00059894 ID=TCONS_00059894|Name=TCONS_00059894|organism=Clytia hemisphaerica|type=transcript|length=1563bp
ATTGTATTAAAaggaattttctaaattttgcaTTAGATTAaCATCGAATC
ATTCATTTcggagaagaaaaaaataaagaggaTTATACACCAACGATGCC
AACCATTTGTGATTGTATCAATTCATTTATCAAAGAATGTGTCCAATTTG
TACAAAAACATTTCCGtccaaaaacaaaagaagataGTAAAAGCACACAA
AGTCCTGCCAAGAAACGTGTCTGGTTTGCGCCCACGTTAACGGCGGAATT
TCATACTCGTGGGCGGGAGACACCCTCGTGTGTCATCACATGTAAAACTG
AGCATTCTCCGAACCCTAGATCCAGATGGAGCATTACCGAACGCAATGCA
TTTTGGGATATTATCCAAGATCATCTACGTAAGCTACTTGAAGAcattga
cgaaaattttgaaatcaatctCCATTCAATCTGTTGTGAAGATGATATTG
ACTTTACTGTCTTGGACCCAACTTCAATCCAAGATTATGAAATCTGTCGA
GTTCTGATTGGCTGTGAGCTTTGGAAAGGACATTATGTATGTGCAGTAAA
AATGTATAGGCTGGTAACAACTTTCTTTGAGATTCTACTGAATCAGAAGC
AAGGAAATGACACTGTAGGGGATAATGACATTGAACTTGGCTTGTACGGA
CTGAAAGACATATTCTTGACGACTTGCTAGAAGAATTGTTTACGTCTTTA
TCTCGAACAAGGGTCTATCCTACCATAAAGCTTACTGTAGATTGATTTCA
CATTGGATATAGATGATCAAGAGAGATTTATgtattatcaattatttaca
aTAGACTTTCTGAAATCCACTCGTTATCTCTCTCTCAGTGctacttacac
gtttttttataataacaaactATAATCATATAACGTTATAATAGTATTGN
CTGTGAACTTTGGAAAGGACATTATGTATGTGCAGTAAAAATGTATAGGC
TGGTAACAACTTTCTTTGAGATTCTACTGAATCAGAACCAAGGAAAAGAC
ACTGTAGGGGATAATGACATTGAACTTGGCTTGTACGGACTGAAAGACAT
ATTCTTGACGACTTGCTAGAAGAATTGTTTACGTCTTTATCTCGAACAAG
GGTCTATCCTACCATAAAGCTTACTGTAGATTGATTTCACATTGGATATA
GATGATCAAGAGAGATTTATgtattatcaattatttacaaTAGACTTTCT
GAAATCCACTCGTTATCTCTCTCTCAGTGctacttacacgtttttttata
ataacaaactATAATCATATAACGTTATAATAGTATTGTACTACTTTCCT
CAGTACAAGTCATGAGCCTATTGCTGaatttctcgtggcaggcgTGGCAA
CTGTGGTTGAGcgtttaaaattgatttcacaGCGATTGCGTACGGCTAca
tttctcgtggcaagcgtggcaatCATTGTTGTATGGGCTTTGCAGACTAT
AAAACACTCGATTTTTCTTacgaaaatggaaaaaaatcctcaaaaagtgg
tgaaataagaatatgttaagaacatttttaggcttaaagctcaaaaagtt
aagaacatccgaa Run BLAST on NCBI transcript from alignment at scaffold_331:560092..563198- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00059894 ID=TCONS_00059894|Name=TCONS_00059894|organism=Clytia hemisphaerica|type=transcript|length=3107bp|location=Sequence derived from alignment at scaffold_331:560092..563198- (Clytia hemisphaerica)
ATTGTATTAAAAGGAATTTTCTAAATTTTGCATTAGATTAAGTAAGTACA
CGTTTTTTTATGAGAGCATCCAGAATTTTTAAAGTCTTCGGATGTTTTAA
GCCTTAAAATGTTCTTGACTTGTTCTTAACATTTTAGTCAGTGAAGCCTT
ATGTTCTTATATAGTTCGTTCTAATAAAAAAAAGTGCATGGTTATGTTTA
ATTTGATGGCGAAATTTACTTTATCTGTTATGTTGAGATCCGGGGGACAC
TCGATTTCGATTTGGATTTCGACTCGGTATGTGCTGCGCAAAATCTTCTT
TTTAAAATTGTACCCTTATAGTACAGTTCAATATGGCTGAAAATATACCC
TTTCAGTGCATCTTTCATTTACCCAACCCTTATAACCCAGCACTATATTT
TTAGGCCAGATCATATGAGTGCCCCCCCCCCGGATTGAGATTAACATTAT
GGAATTTTGAAACTTTTGCTTAGCTTTCTTAGAGACTCTAAAACATCCGG
GACATACAGAAAGTCGCAATTAAGTGGAGGGCGCACGGGATATTGGCCTT
TTTTTAGATCGGTAAGTAAATCAGTATTAAGGGAAAAGTTTGATCGGTAA
TCGGTAATTGAGCAAAAATTTGATCGGTATGTCGGTATTACGAATCCCGT
ACGCGCCCCCAATTAAGGATCATAGGTAGAATATCTGCATTTTCGACGTT
CATAATAATAATAACAATAATAATATTTTAAGTGGCTGGCCATAGAATAA
TGAATCAGCTTTTAGGCAGCTGAGCCATTGTCTCCCCCAGGGGACACTTG
TATAACATAACAGAACAACATGGTCATGCCTTATCGTTAGGCATGAAATG
TACGTTGTGTGTACGTTGTGTACCATATTAATCAGGGTAAAAGAAGATAT
AAAACTGTAATTAAAATGTAATTGAACCAGATTGAACTATAATTAAACAA
AGATTAATTAGTATGGGGAAGTCAAATGAATATTTTCAGGGTTGCAACAT
TTTCGAAAATAATGTAATTAGCGGGTTACGTATACTGTCGCAGAGTAACA
ATTTGATGGTATAGCTAGGATGGATACTATAAGCGTGTGGCTACATGTAT
GGTTTTACTTCGGTTTGCCGAAGTGAACTACTTAGGGTGTGAGCAGAAAC
TTTCCCGATTTTCGTGAATTTTAGTCTTTTTCGCGAAAATAAATGTCTTT
GAAATTCTTAAAAGGGCCATTCGCGAAAGTTTTAGACTAGTAAACCACAT
CGATGTATTTCGCTGCAGATTAATCTATTTTTTTATATGTTCACTGAATA
CAATGTCTTTCCAATCCACTCTCCCGCGGCAATTTCTATTTTTTATAAGA
ACTCTTTATTATAAGCACCATTCCCGCGTTCCTAGGCTAGTCCTAGGCTA
GGCTAGTCCAAAACCATCTCAAGTAGATTTCTTTAGTTTGGAATAATATA
ATTTCTATACCCATTTGGGATTTCGATAGAAATTTTTATCCAAATTAAGG
GAAAAAAGTTCCAACGGGGCTGTGAGACAGAATTAATGAAATTGTTGAAC
TATCAGAAGAGCAATCTTTTTTTTTAATCTTTCAGCATCGAATCATTCAT
TTCGGAGAAGAAAAAAATAAAGAGGATTATACACCAACGATGCCAACCAT
TTGTGATTGTATCAATTCATTTATCAAAGAATGTGTCCAATTTGTACAAA
AACATTTCCGTCCAAAAACAAAAGAAGATAGTAAAAGCACACAAAGTCCT
GCCAAGAAACGTGTCTGGTTTGCGCCCACGTTAACGGCGGAATTTCATAC
TCGTGGGCGGGAGACACCCTCGTGTGTCATCACATGTAAAACTGAGCATT
CTCCGAACCCTAGATCCAGATGGAGCATTACCGAACGCAATGCATTTTGG
GATATTATCCAAGATCATCTACGTAAGCTACTTGAAGACATTGACGAAAA
TTTTGAAATCAATCTCCATTCAATCTGTTGTGAAGATGATATTGACTTTA
CTGTCTTGGACCCAACTTCAATCCAAGATTATGAAATCTGTCGAGTTCTG
ATTGGCTGTGAGCTTTGGAAAGGACATTATGTATGTGCAGTAAAAATGTA
TAGGCTGGTAACAACTTTCTTTGAGATTCTACTGAATCAGAAGCAAGGAA
ATGACACTGTAGGGGATAATGACATTGAACTTGGCTTGTACGGACTGAAA
GACATATTCTTGACGACTTGCTAGAAGAATTGTTTACGTCTTTATCTCGA
ACAAGGGTCTATCCTACCATAAAGCTTACTGTAGATTGATTTCACATTGG
ATATAGATGATCAAGAGAGATTTATGTATTATCAATTATTTACAATAGAC
TTTCTGAAATCCACTCGTTATCTCTCTCTCAGTGCTACTTACACGTTTTT
TTATAATAACAAACTATAATCATATAACGTTATAATAGTATTGNCTGTGA
ACTTTGGAAAGGACATTATGTATGTGCAGTAAAAATGTATAGGCTGGTAA
CAACTTTCTTTGAGATTCTACTGAATCAGAACCAAGGAAAAGACACTGTA
GGGGATAATGACATTGAACTTGGCTTGTACGGACTGAAAGACATATTCTT
GACGACTTGCTAGAAGAATTGTTTACGTCTTTATCTCGAACAAGGGTCTA
TCCTACCATAAAGCTTACTGTAGATTGATTTCACATTGGATATAGATGAT
CAAGAGAGATTTATGTATTATCAATTATTTACAATAGACTTTCTGAAATC
CACTCGTTATCTCTCTCTCAGTGCTACTTACACGTTTTTTTATAATAACA
AACTATAATCATATAACGTTATAATAGTATTGTACTACTTTCCTCAGTAC
AAGTCATGAGCCTATTGCTGAATTTCTCGTGGCAGGCGTGGCAACTGTGG
TTGAGCGTTTAAAATTGATTTCACAGCGATTGCGTACGGCTACATTTCTC
GTGGCAAGCGTGGCAATCATTGTTGTATGGGCTTTGCAGACTATAAAACA
CTCGATTTTTCTTACGAAAATGGAAAAAAATCCTCAAAAAGTGGTGAAAT
AAGAATATGTTAAGAACATTTTTAGGCTTAAAGCTCAAAAAGTTAAGAAC
ATCCGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00059894-exon-scaffold_331-1575043694:563158..563198 | TCONS_00059894-exon-scaffold_331-1575043694:563158..563198 | Clytia hemisphaerica | exon |
| TCONS_00059894-exon-scaffold_331-1575043694:560092..561613 | TCONS_00059894-exon-scaffold_331-1575043694:560092..561613 | Clytia hemisphaerica | exon |
| TCONS_00059894-exon-scaffold_331-1510915933:563158..563198 | TCONS_00059894-exon-scaffold_331-1510915933:563158..563198 | Clytia hemisphaerica | exon |
| TCONS_00059894-exon-scaffold_331-1510915933:560092..561613 | TCONS_00059894-exon-scaffold_331-1510915933:560092..561613 | Clytia hemisphaerica | exon |
| TCONS_00059894-exon-scaffold_331-1491911889:563158..563198 | TCONS_00059894-exon-scaffold_331-1491911889:563158..563198 | Clytia hemisphaerica | exon |
| TCONS_00059894-exon-scaffold_331-1491911889:560092..561613 | TCONS_00059894-exon-scaffold_331-1491911889:560092..561613 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_331 | supercontig | scaffold_331:560092..563198 - |
Blast
The following BLAST results are available for this feature:
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